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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:5644..6515+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002944-T1 ID=KJC3_002944-T1|Name=KJC3_002944-T1|organism=Aspergillus niger KJC3|type=mRNA|length=872bp|location=Sequence derived from alignment at ch3:5644..6515+ (Aspergillus niger KJC3)
GAACAACATGATGAGAGCAGCAAGGTATAAAGCTGCTTCTCTGTACTATA
ACCATCCGTGGTTTCATCTCGCCATCAACACTCAATCATTCAATCCCTCT
TCATTCTTTCCCTGCTAATCTTTCTTAGCAAACTACTGCCCACACATTCC
TTTCAACGCAAAGATTTCTTTTCCCAGAACCAAACAAGTCAAAATGCTTT
TCAGTCTCAAGCCCACGATTCTCCTAGCCGTGGCTCTCACCGCAGTCGCC
AGCCCCGTCGCCAACCCAACGGCAGATGAGCCTCATACTCTTGTTTCCCG
CGCCACCATCAAAGATGTTGACTGCGATGGAACAAAGTTCACCACCACAG
ACATCAAAAATGCGATCAGCCAGTCAAGGACTGGTGCTGGGAAGTATCCA
GATACATATGGTAACGGCGAGGGCTATTTCAAGGCCACCACCCAACTGTA
TGAGTATCCTTTGGTTTCGGGGGGTACCTATACCGGTAAGCTACTCCCAC
ACCTTCTGCAGGATAAGATGGGCCTGTGCTAATACGCTTGAGAAAGGTGG
CGATCCGGGCAAGTATCGTGTTATCATGAATGAGAAGTATAACTATGTTG
GATCGCTATATCATATTCGTGGTGTAAGCAATGGCTTTAAGAAGTGCACC
AATGTTGAGGCCAGTCCTGCTACCACGACTACTACCACCACCACTACTAA
GGCCACTACTAAGGCCACTACTAAGGCCACTACCAAGGCCACTACCAAGA
CCTCTACCAAGACTAGTAGTGGCAAGACGAGTCACAAGTCTGGCAGCAAG
TCTAGTAAGAAGGGTAGTAGGCATTAAAATAAGTCATTATGTTTTGCTGC
CTACGAAGACAAAATATCCCGA back to topCoding sequence (CDS) from alignment at ch3:5644..6515+ >KJC3_002944-T1 ID=KJC3_002944-T1|Name=KJC3_002944-T1|organism=Aspergillus niger KJC3|type=CDS|length=1146bp|location=Sequence derived from alignment at ch3:5644..6515+ (Aspergillus niger KJC3)
ATGCTTTTCAGTCTCAAGCCCACGATTCTCCTAGCCGTGGCTCTCACCGC
AGTCGCCAGCCCCGTCGCCAACCCAACGGCAGATGAGCCTCATACTCTTG
TTTCCCGCGCCACCATCAAAGATGTTGACTGCGATGGAACAAAGTTCACC
ACCACAGACATCAAAAATGCGATCAGCCAGTCAAGGACTGGTGCTGGGAA
GTATCCAGATACATATGGTAACGGCGAGGGCTATTTCAAGGCCACCACCC
AACTGTATGAGTATCCTTTGGTTTCGGGGGGTACCTATACCGGTGGCGAT
CCGGGCAAGTATCGTGTTATCATGAATGAGAAGTATAACTATGTTGGATC
GCTATATCATATTCGTGGTGTAAGCAATGGCTTTAAGAAGTGCACCAATG
TTGAGGCCAGTCCTGCTACCACGACTACTACCACCACCACTACTAAGGCC
ACTACTAAGGCCACTACTAAGGCCACTACCAAGGCCACTACCAAGACCTC
TACCAAGACTAGTAGTGGCAAGACGAGTCACAAGTCTGGCAGCAAGTCTA
GTAAGAAGGGTAGTAGGCATTAAATGCTTTTCAGTCTCAAGCCCACGATT
CTCCTAGCCGTGGCTCTCACCGCAGTCGCCAGCCCCGTCGCCAACCCAAC
GGCAGATGAGCCTCATACTCTTGTTTCCCGCGCCACCATCAAAGATGTTG
ACTGCGATGGAACAAAGTTCACCACCACAGACATCAAAAATGCGATCAGC
CAGTCAAGGACTGGTGCTGGGAAGTATCCAGATACATATGGTAACGGCGA
GGGCTATTTCAAGGCCACCACCCAACTGTATGAGTATCCTTTGGTTTCGG
GGGGTACCTATACCGGTGGCGATCCGGGCAAGTATCGTGTTATCATGAAT
GAGAAGTATAACTATGTTGGATCGCTATATCATATTCGTGGTGTAAGCAA
TGGCTTTAAGAAGTGCACCAATGTTGAGGCCAGTCCTGCTACCACGACTA
CTACCACCACCACTACTAAGGCCACTACTAAGGCCACTACTAAGGCCACT
ACCAAGGCCACTACCAAGACCTCTACCAAGACTAGTAGTGGCAAGACGAG
TCACAAGTCTGGCAGCAAGTCTAGTAAGAAGGGTAGTAGGCATTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004540 | ribonuclease activity |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002944-T1.utr5p1 | KJC3_002944-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002944-T1.utr3p1 | KJC3_002944-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_3.1 |
| Note | SECRETED:SignalP(1-19) |
| DBxref | InterPro:IPR016191 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:5644..6515 + |
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