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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:78881..80200+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_002968-T1 ID=KJC3_002968-T1|Name=KJC3_002968-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1320bp|location=Sequence derived from alignment at ch3:78881..80200+ (Aspergillus niger KJC3)
AATCCCTCAAAAGTATATATTCACCGCTACAACAGCATCAGATACGGACT
CCGCTCAATATTATATTCAAACAACAGGAAATCATCTGTGTCTTTCGTCA
TGACTGGCGAATACGTCAAGGATCAACCCGCTGGGTTCAGCAACCGTATT
CAGCGCATTGCCATCGTCGGGGTAAGCCCCCTGTGCCCATCTGTGCCATC
CATCACTAACCACAAGTCTGATTGCCAGGCTGGGGGCACCGTCGGAAGGC
CCATCACCGAGGAACTGCTGCGGACTGGACAGCATAGCGTGACAGCCCTG
ACCCGCATCGGCAGTACGAGCCAGGTGCCTTCCGGCGTCCAGTCCATTGC
CGTGGACTACGATGACGAGGCCAGTCTAGTACGCGCTCTACAGGGCCACG
ACTGCCTGATCATCAGCCTGTCAGTGCAGACCCCTCGCGATACTCAGCCA
AAGCTGCTGCAGGCTGCCTCTCAGGCTGGTATCCGGCATGTGATGCCAAA
TGTCTGGGGCTGTGATGTCATGCACCCGCCGTTAGCCGACAGTGGCCTGA
ACTGGGGAGGGTTCCGCGAACTCGTGGCCGGCATCGAGGCCAAGGGCATG
GGGTGGACCGCGCTGATCTGTGGATTCTGGTATGAGCACAGCCTGGTACT
GGGACCGAGTGCATTCGGCTTCGATCTTCCAGCCAAGAAGCTCATCCTGA
ACGACGACGGCAACACCAAGATCAATATCAGCACCCTAGCCCAGTGTGGC
CGAGCCGTGTCCACCCTTCTGAGCCTTCCGGTGCTCCCGGAAGATGAACA
AGATGACCAGCTGACCCTGAGTCGGTGGCGGAACAAGCCGGTGTATATTT
CCAGTTTCCTGCTCAGTCAGCGAGACATGCTAGCAAGTTGGCTCCGAGTG
ACGGGCGAGACGGCGGACAGTTGGACGATTGAGCAGGAATCATCTCAGGG
TCGGTACGAGCGCGGATTGGAGTTGATGAAGAAGGGAGATCATGCGGGAT
TGGTGCTGGCCATGTACTCGCGGGTCTTTTTCCCCAACGGCGATGGCAAC
CACGAGCAGCGTCGGGGGCTAGACAATGACTTGCTGCGACTTCCCACGGA
GGATTTGGATGAACACACGCGCCAGGCCAAGGCCATGTCTGACCGGGGAT
ACAATTATATGACAAACCGCAATTGACTGGTGTGGATGGTCGGGGATGTG
CTGTTCCTGTGAGAATGTTTCTAGCGTGATGGGGTCCACTACTACTACCT
CGCATGCAGCTTGTCAGTACTACTAGATAGTTAACCAGAGAGGGAATGCA
ACCCACCATTAACACGATGG back to topCoding sequence (CDS) from alignment at ch3:78881..80200+ >KJC3_002968-T1 ID=KJC3_002968-T1|Name=KJC3_002968-T1|organism=Aspergillus niger KJC3|type=CDS|length=1077bp|location=Sequence derived from alignment at ch3:78881..80200+ (Aspergillus niger KJC3)
ATGACTGGCGAATACGTCAAGGATCAACCCGCTGGGTTCAGCAACCGTAT
TCAGCGCATTGCCATCGTCGGGGTAAGCCCCCTGTGCCCATCTGTGCCAT
CCATCACTAACCACAAGTCTGATTGCCAGGCTGGGGGCACCGTCGGAAGG
CCCATCACCGAGGAACTGCTGCGGACTGGACAGCATAGCGTGACAGCCCT
GACCCGCATCGGCAGTACGAGCCAGGTGCCTTCCGGCGTCCAGTCCATTG
CCGTGGACTACGATGACGAGGCCAGTCTAGTACGCGCTCTACAGGGCCAC
GACTGCCTGATCATCAGCCTGTCAGTGCAGACCCCTCGCGATACTCAGCC
AAAGCTGCTGCAGGCTGCCTCTCAGGCTGGTATCCGGCATGTGATGCCAA
ATGTCTGGGGCTGTGATGTCATGCACCCGCCGTTAGCCGACAGTGGCCTG
AACTGGGGAGGGTTCCGCGAACTCGTGGCCGGCATCGAGGCCAAGGGCAT
GGGGTGGACCGCGCTGATCTGTGGATTCTGGTATGAGCACAGCCTGGTAC
TGGGACCGAGTGCATTCGGCTTCGATCTTCCAGCCAAGAAGCTCATCCTG
AACGACGACGGCAACACCAAGATCAATATCAGCACCCTAGCCCAGTGTGG
CCGAGCCGTGTCCACCCTTCTGAGCCTTCCGGTGCTCCCGGAAGATGAAC
AAGATGACCAGCTGACCCTGAGTCGGTGGCGGAACAAGCCGGTGTATATT
TCCAGTTTCCTGCTCAGTCAGCGAGACATGCTAGCAAGTTGGCTCCGAGT
GACGGGCGAGACGGCGGACAGTTGGACGATTGAGCAGGAATCATCTCAGG
GTCGGTACGAGCGCGGATTGGAGTTGATGAAGAAGGGAGATCATGCGGGA
TTGGTGCTGGCCATGTACTCGCGGGTCTTTTTCCCCAACGGCGATGGCAA
CCACGAGCAGCGTCGGGGGCTAGACAATGACTTGCTGCGACTTCCCACGG
AGGATTTGGATGAACACACGCGCCAGGCCAAGGCCATGTCTGACCGGGGA
TACAATTATATGACAAACCGCAATTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002968-T1.utr5p1 | KJC3_002968-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_002968-T1.utr3p1 | KJC3_002968-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_3.2 |
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR016040 |
| DBxref | PFAM:PF05368 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:78881..80200 + |
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