KJC3_003025-T1, KJC3_003025-T1 (mRNA) Aspergillus niger KJC3

Overview


Name	KJC3_003025-T1
Unique Name	KJC3_003025-T1
Type	mRNA
Organism	Aspergillus niger KJC3

Sequences

The following sequences are available for this feature:

mRNA from alignment at ch3:219761..222133-
coding sequence from alignment at ch3:219761..222133-

mRNA from alignment at ch3:219761..222133-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>KJC3_003025-T1 ID=KJC3_003025-T1|Name=KJC3_003025-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2373bp|location=Sequence derived from alignment at ch3:219761..222133- (Aspergillus niger KJC3)
CTACCCCCTCACCTATTCACTACATACCCTATCGATTGCTTCTCATATCA
TTGCTTATCGATCTCCATGACATCAGGGGCCGTCGTCACTACCACTGAGG
CCCCTGCTCGCTCTGGCAAGCCAACTGACACCCCAGTGCGCTCTCGTTCC
TTGGGAGGATGCGAGACCTGTCGTCGGCGCCATGCTAAGTGTGATGAGAC
TCGGCCATCCTGTCTCGTGTGTAAGCGTGCGGGGCTCGTCTGTGAGAGGT
ACGAGATCCGGCTGTTGTTCGATGCGAGCGACAGTCAGAGCTCACGATGT
CGCCGTCCTCTGTTCACCGAAGATATGCGTCAGCGCATGAGTGAGCAGTT
GACCGACAGCTTGGACTTGGATGATGTCCACACCATCCTGACCAAGATTG
ATGATCAATGCGAGAGCCAGGAGGGAGATACTAATTCCAGTTTTACTACC
TGCATGGGTCCCTTTGGTGCCTTTCGGGTGGTTCGAGCTGAGATGGACCT
CCCCGAATCCCCAATGGACCCAGTCGACGAACCCCTTCCTCATGTGGAAG
AAAACCCAGCAACTGCTGGGCTGGAAATGTCTTTGGATGATGCATTTAGC
AATGATCCCCTCATGGAGTGTCTGTTTGGCCATGTGAACGTAGATGTTAC
TGCCGACTTGGATGCTCATGACTTCTTCGCCGCAACCCTACCTTCAGCCG
AAAGTGAGGGAATTTCCCCACAATCCTTGTCAGGGGGCTTCCTTATGGGA
CCATCGCCATCAGTTCCTCTGCAAGCATCGTTATTATCGTCGCCGGAGAT
CCAATATGCTCCTTCCGTGACCAACCTGGCCCCGCCAGATGCCCCCTTAT
TGCTATCTGCATACACGAAGAATGTCACTCAGCTGTTCAGCCCAATACAG
CTGGAAAAGAGCCCCTGGAGTATGCTCTATATGCCTCCCGCCATGGAGAC
CTTAGCTTTGTTGACTATGGGAGAGTTGGCCAACAACACCAGGATGTCTA
TCTTCTATGCAATCCTGGCCACTTCGGCCTTCACCCAGCGTCTATCCTCG
TTGACGCGCAGCGCAAGTCAATATTGGCAGAGACAGGCAGAGACCTTTGC
CATCGAAGCCCAGAATCATCTCAAACGAGCGCTACATGATGCATCATCGA
GCGTCAAAAAAGTCAAGTACAAAGACGTCCTTATCGCCTTGCTGTGCATG
AACACGGTTTCGGTAAGCACAACAGCCGCAGCTGAGCAGAGCACAAGTCT
CACCATGAACTTAGGCCTACCAAGGGAGCACAGAGCGGGTGCGACGATGT
CTGTTAGACTGCGAAAATTGGGTCCGTTTTCGTGGCTTGCCTAAAACGCG
GAAATCACGCAAGGTCCGCTTACTACACCATTGCTATGTCTATTTACGTA
TCTTCCAGGAGAGCACCTCCGTCCTCCCTGTGTCCCACGTAGAGATAGAG
TCCGACCATGCATCCCCCGATACTGTGCGCTCCATCGCCACGACTCGCTC
GTTCCGGCTTCGGCAATGGGAAGGTCGTTTGGACCAGCGTATGAGTGAAT
TGAAGGAGCAGCACCAGGGGGAGAATGATTTGCACTTGGAAATTCCGGGC
CGCTGGGACTCGACCATGTACCCGCAGGTCTTTGGTCTGCCGGAATCTCT
ACTATTCCTACTATCACAGGTCACGAGACTGGGCAATGAGCGAGACCTAT
CGGACTTGGGGAGCTATACGGGCGCGCTGGATTTTAGGCAGTTCTCCGCG
CGGGCGCGGAGTCTGGAGCGATGCATTTCTACTTGGCGACCACCTTCTTT
ACCAGATGCAGATCCACATAGCATCATCGCTCAGACAAACGCTACCATTG
TCCGCCTGATGCTCTCAGCCCTTCACAAAGCTCTTCTTATCTTCTTTTAC
CGTCGGATCTATGACGTGGACCCGATGATCCTTCAAGACAAAGCGTGGCA
AGTCCGGGACGCCTTGGCTCAGGTAGAAAGAGACGATATGCCGGCGACTC
GTATAGCTGCACCATTTATTTGGGCGGCGTTTATTGCCGCCTGTGAGGCT
TTGGATCCTACTTTGCAAGACTGGTTTGCAGGCTGGTTCGAGACGTCAGC
CAGAAAGAGCGGGCTTGGGACCTTTAAGCTGGCGCTGAAAATAGCAAGGC
AGGTCTGGGAGAGACAACGGCTGCCCCTGAATAGCAGCGCCAGCACCAGT
TGGCCGCAGATTATGCGGGAAAGCAACCTGAGTTTGTTCTACATATAACG
ACGCATCATGAAATATCATTTCATTATCAGATACATCATACAATCATGTC
CAACCTCACAGCAAAGCATACTCACTGTAGAAACTGGTCGTTGCACAGCG
CTCGCTCCATCTCATAATCCGGT

Coding sequence (CDS) from alignment at ch3:219761..222133-

>KJC3_003025-T1 ID=KJC3_003025-T1|Name=KJC3_003025-T1|organism=Aspergillus niger KJC3|type=CDS|length=4260bp|location=Sequence derived from alignment at ch3:219761..222133- (Aspergillus niger KJC3)
GCCTACCAAGGGAGCACAGAGCGGGTGCGACGATGTCTGTTAGACTGCGA
AAATTGGGTCCGTTTTCGTGGCTTGCCTAAAACGCGGAAATCACGCAAGG
TCCGCTTACTACACCATTGCTATGTCTATTTACGTATCTTCCAGGAGAGC
ACCTCCGTCCTCCCTGTGTCCCACGTAGAGATAGAGTCCGACCATGCATC
CCCCGATACTGTGCGCTCCATCGCCACGACTCGCTCGTTCCGGCTTCGGC
AATGGGAAGGTCGTTTGGACCAGCGTATGAGTGAATTGAAGGAGCAGCAC
CAGGGGGAGAATGATTTGCACTTGGAAATTCCGGGCCGCTGGGACTCGAC
CATGTACCCGCAGGTCTTTGGTCTGCCGGAATCTCTACTATTCCTACTAT
CACAGGTCACGAGACTGGGCAATGAGCGAGACCTATCGGACTTGGGGAGC
TATACGGGCGCGCTGGATTTTAGGCAGTTCTCCGCGCGGGCGCGGAGTCT
GGAGCGATGCATTTCTACTTGGCGACCACCTTCTTTACCAGATGCAGATC
CACATAGCATCATCGCTCAGACAAACGCTACCATTGTCCGCCTGATGCTC
TCAGCCCTTCACAAAGCTCTTCTTATCTTCTTTTACCGTCGGATCTATGA
CGTGGACCCGATGATCCTTCAAGACAAAGCGTGGCAAGTCCGGGACGCCT
TGGCTCAGGTAGAAAGAGACGATATGCCGGCGACTCGTATAGCTGCACCA
TTTATTTGGGCGGCGTTTATTGCCGCCTGTGAGGCTTTGGATCCTACTTT
GCAAGACTGGTTTGCAGGCTGGTTCGAGACGTCAGCCAGAAAGAGCGGGC
TTGGGACCTTTAAGCTGGCGCTGAAAATAGCAAGGCAGGTCTGGGAGAGA
CAACGGCTGCCCCTGAATAGCAGCGCCAGCACCAGTTGGCCGCAGATTAT
GCGGGAAAGCAACCTGAGTTTGTTCTACATATAAATGACATCAGGGGCCG
TCGTCACTACCACTGAGGCCCCTGCTCGCTCTGGCAAGCCAACTGACACC
CCAGTGCGCTCTCGTTCCTTGGGAGGATGCGAGACCTGTCGTCGGCGCCA
TGCTAAGTGTGATGAGACTCGGCCATCCTGTCTCGTGTGTAAGCGTGCGG
GGCTCGTCTGTGAGAGGTACGAGATCCGGCTGTTGTTCGATGCGAGCGAC
AGTCAGAGCTCACGATGTCGCCGTCCTCTGTTCACCGAAGATATGCGTCA
GCGCATGAGTGAGCAGTTGACCGACAGCTTGGACTTGGATGATGTCCACA
CCATCCTGACCAAGATTGATGATCAATGCGAGAGCCAGGAGGGAGATACT
AATTCCAGTTTTACTACCTGCATGGGTCCCTTTGGTGCCTTTCGGGTGGT
TCGAGCTGAGATGGACCTCCCCGAATCCCCAATGGACCCAGTCGACGAAC
CCCTTCCTCATGTGGAAGAAAACCCAGCAACTGCTGGGCTGGAAATGTCT
TTGGATGATGCATTTAGCAATGATCCCCTCATGGAGTGTCTGTTTGGCCA
TGTGAACGTAGATGTTACTGCCGACTTGGATGCTCATGACTTCTTCGCCG
CAACCCTACCTTCAGCCGAAAGTGAGGGAATTTCCCCACAATCCTTGTCA
GGGGGCTTCCTTATGGGACCATCGCCATCAGTTCCTCTGCAAGCATCGTT
ATTATCGTCGCCGGAGATCCAATATGCTCCTTCCGTGACCAACCTGGCCC
CGCCAGATGCCCCCTTATTGCTATCTGCATACACGAAGAATGTCACTCAG
CTGTTCAGCCCAATACAGCTGGAAAAGAGCCCCTGGAGTATGCTCTATAT
GCCTCCCGCCATGGAGACCTTAGCTTTGTTGACTATGGGAGAGTTGGCCA
ACAACACCAGGATGTCTATCTTCTATGCAATCCTGGCCACTTCGGCCTTC
ACCCAGCGTCTATCCTCGTTGACGCGCAGCGCAAGTCAATATTGGCAGAG
ACAGGCAGAGACCTTTGCCATCGAAGCCCAGAATCATCTCAAACGAGCGC
TACATGATGCATCATCGAGCGTCAAAAAAGTCAAGTACAAAGACGTCCTT
ATCGCCTTGCTGTGCATGAACACGGTTTCGGCCTACCAAGGGAGCACAGA
GCGGGTGCGACGATGTCTGTTAGACTGCGAAAATTGGGTCCGTTTTCGTG
GCTTGCCTAAAACGCGGAAATCACGCAAGGTCCGCTTACTACACCATTGC
TATGTCTATTTACGTATCTTCCAGGAGAGCACCTCCGTCCTCCCTGTGTC
CCACGTAGAGATAGAGTCCGACCATGCATCCCCCGATACTGTGCGCTCCA
TCGCCACGACTCGCTCGTTCCGGCTTCGGCAATGGGAAGGTCGTTTGGAC
CAGCGTATGAGTGAATTGAAGGAGCAGCACCAGGGGGAGAATGATTTGCA
CTTGGAAATTCCGGGCCGCTGGGACTCGACCATGTACCCGCAGGTCTTTG
GTCTGCCGGAATCTCTACTATTCCTACTATCACAGGTCACGAGACTGGGC
AATGAGCGAGACCTATCGGACTTGGGGAGCTATACGGGCGCGCTGGATTT
TAGGCAGTTCTCCGCGCGGGCGCGGAGTCTGGAGCGATGCATTTCTACTT
GGCGACCACCTTCTTTACCAGATGCAGATCCACATAGCATCATCGCTCAG
ACAAACGCTACCATTGTCCGCCTGATGCTCTCAGCCCTTCACAAAGCTCT
TCTTATCTTCTTTTACCGTCGGATCTATGACGTGGACCCGATGATCCTTC
AAGACAAAGCGTGGCAAGTCCGGGACGCCTTGGCTCAGGTAGAAAGAGAC
GATATGCCGGCGACTCGTATAGCTGCACCATTTATTTGGGCGGCGTTTAT
TGCCGCCTGTGAGGCTTTGGATCCTACTTTGCAAGACTGGTTTGCAGGCT
GGTTCGAGACGTCAGCCAGAAAGAGCGGGCTTGGGACCTTTAAGCTGGCG
CTGAAAATAGCAAGGCAGGTCTGGGAGAGACAACGGCTGCCCCTGAATAG
CAGCGCCAGCACCAGTTGGCCGCAGATTATGCGGGAAAGCAACCTGAGTT
TGTTCTACATATAAATGACATCAGGGGCCGTCGTCACTACCACTGAGGCC
CCTGCTCGCTCTGGCAAGCCAACTGACACCCCAGTGCGCTCTCGTTCCTT
GGGAGGATGCGAGACCTGTCGTCGGCGCCATGCTAAGTGTGATGAGACTC
GGCCATCCTGTCTCGTGTGTAAGCGTGCGGGGCTCGTCTGTGAGAGGTAC
GAGATCCGGCTGTTGTTCGATGCGAGCGACAGTCAGAGCTCACGATGTCG
CCGTCCTCTGTTCACCGAAGATATGCGTCAGCGCATGAGTGAGCAGTTGA
CCGACAGCTTGGACTTGGATGATGTCCACACCATCCTGACCAAGATTGAT
GATCAATGCGAGAGCCAGGAGGGAGATACTAATTCCAGTTTTACTACCTG
CATGGGTCCCTTTGGTGCCTTTCGGGTGGTTCGAGCTGAGATGGACCTCC
CCGAATCCCCAATGGACCCAGTCGACGAACCCCTTCCTCATGTGGAAGAA
AACCCAGCAACTGCTGGGCTGGAAATGTCTTTGGATGATGCATTTAGCAA
TGATCCCCTCATGGAGTGTCTGTTTGGCCATGTGAACGTAGATGTTACTG
CCGACTTGGATGCTCATGACTTCTTCGCCGCAACCCTACCTTCAGCCGAA
AGTGAGGGAATTTCCCCACAATCCTTGTCAGGGGGCTTCCTTATGGGACC
ATCGCCATCAGTTCCTCTGCAAGCATCGTTATTATCGTCGCCGGAGATCC
AATATGCTCCTTCCGTGACCAACCTGGCCCCGCCAGATGCCCCCTTATTG
CTATCTGCATACACGAAGAATGTCACTCAGCTGTTCAGCCCAATACAGCT
GGAAAAGAGCCCCTGGAGTATGCTCTATATGCCTCCCGCCATGGAGACCT
TAGCTTTGTTGACTATGGGAGAGTTGGCCAACAACACCAGGATGTCTATC
TTCTATGCAATCCTGGCCACTTCGGCCTTCACCCAGCGTCTATCCTCGTT
GACGCGCAGCGCAAGTCAATATTGGCAGAGACAGGCAGAGACCTTTGCCA
TCGAAGCCCAGAATCATCTCAAACGAGCGCTACATGATGCATCATCGAGC
GTCAAAAAAGTCAAGTACAAAGACGTCCTTATCGCCTTGCTGTGCATGAA
CACGGTTTCG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0042025	host cell nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
KJC3_003025	KJC3_003025	Aspergillus niger KJC3	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003025-T1	KJC3_003025-T1-protein	Aspergillus niger KJC3	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003025-T1.cds	KJC3_003025-T1.cds	Aspergillus niger KJC3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003025-T1.utr3p1	KJC3_003025-T1.utr3p1	Aspergillus niger KJC3	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003025-T1.exon2	KJC3_003025-T1.exon2	Aspergillus niger KJC3	exon
KJC3_003025-T1.exon1	KJC3_003025-T1.exon1	Aspergillus niger KJC3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_003025-T1.utr5p1	KJC3_003025-T1.utr5p1	Aspergillus niger KJC3	five_prime_UTR

Properties


Property Name	Value
Note	antiSMASH:Cluster_3.3
DBxref	InterPro:IPR021858
DBxref	InterPro:IPR036864
DBxref	InterPro:IPR001138
DBxref	PFAM:PF00172
DBxref	PFAM:PF11951
Product	hypothetical protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC3	2021-10-31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ch3	supercontig	ch3:219761..222133 -

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KJC3_003025-T1, KJC3_003025-T1 (mRNA) Aspergillus niger KJC3