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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:231664..232863+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003030-T1 ID=KJC3_003030-T1|Name=KJC3_003030-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1200bp|location=Sequence derived from alignment at ch3:231664..232863+ (Aspergillus niger KJC3)
AATATAAAGCCATATAAAACCTTCTGTGGACTCAGACAAAAATCCCACTG
CATTCTCATTCAATTCAGCTTTGGAATAATCCAACTCACCGTATCCTCAA
GTATCCACCATGCCCATTTTCGACGCAACAGCCACCAGCGAACAGGTCAT
CGAAGCCTTCAAGTCTAACATCAAAGGCAAGACCTTCGTCATCACCGGCG
CCGGCAAGCCCAGTATCGGCAGCCAGATGGCTACATCTCTAGCCAAAGCC
GGGCCATCACATATCCTCATTGCCTCACGCACCCTCGGCAAAGTTCATCC
AGTGTTGGATGAGATCCACGCCATCGACAGCACCATCAAAACTACAGCGG
TAGAGGTGGACCTGACAGATCATGAATCCGTTCGCCGCGCCGCAGACGAG
ATTCTCGCTGCGGCACCCAAGATCGATGTCCTGATCAACAGTGCCGGGGT
CATGGCAATCAAGAAATACACCCTCGACAAGCAGGGGATAGAGCTACAAC
TCTCTGCTAATCACGTTGGCCACTTCTTACTCACCAACATGCTCATACCG
GCTCTCATATCTGCTGGATCCGCGCGCGTGGTCAATCTAACCAGCGCCGG
GTACCTCGTCTCGCCATTTCGGTTCGAAGACTGGAACTATTCCAACGGAA
AAGAATACGACCCGTGGACTGGGTACGGGCAGGCTAAAACAGCCAATATA
TTATTCACCTATGGCTTAGGCCAGCGGCTAAAGCATAAGGGAATTGCAGC
CGTTGCTGTTCATCCAGGCTATAATGGAGATACTAAACTTGGCAGTCACC
TTACTTGGGACGATTACGCTAAGATCTCTGCGGTTGCGATACGGAATACC
GGCAAGGAGTTTGTTTTCGAGGAGCCTCGGTTCAAAACGTATACCCAGAT
TGCGGCTACTCCGTTGATTGCCGCTTTGGATCCGGAGTTGCAGGCTCTGG
CGCCGGTGTACATGCAGAATAGTGTGGTTAGTGAGGCTGCGGAGCATGCT
CGGGATCCTGCGAGTGTGGATGCTTTGTGGAGGTTGAGTGAGGGGCTTGT
TGGGCAGGAGTTTCGGTATTAGATTATGTGTGGTATAGAGAACTGGGCTG
CGTAGCTGTATGGCTTACAATCCAACACCTTCTCTCGCAACACTGTGGCA
CGTCTAGTCATTAACTAGTGGCAAATGCATAAACAAGCCTTACATCACGC
back to topCoding sequence (CDS) from alignment at ch3:231664..232863+ >KJC3_003030-T1 ID=KJC3_003030-T1|Name=KJC3_003030-T1|organism=Aspergillus niger KJC3|type=CDS|length=963bp|location=Sequence derived from alignment at ch3:231664..232863+ (Aspergillus niger KJC3)
ATGCCCATTTTCGACGCAACAGCCACCAGCGAACAGGTCATCGAAGCCTT
CAAGTCTAACATCAAAGGCAAGACCTTCGTCATCACCGGCGCCGGCAAGC
CCAGTATCGGCAGCCAGATGGCTACATCTCTAGCCAAAGCCGGGCCATCA
CATATCCTCATTGCCTCACGCACCCTCGGCAAAGTTCATCCAGTGTTGGA
TGAGATCCACGCCATCGACAGCACCATCAAAACTACAGCGGTAGAGGTGG
ACCTGACAGATCATGAATCCGTTCGCCGCGCCGCAGACGAGATTCTCGCT
GCGGCACCCAAGATCGATGTCCTGATCAACAGTGCCGGGGTCATGGCAAT
CAAGAAATACACCCTCGACAAGCAGGGGATAGAGCTACAACTCTCTGCTA
ATCACGTTGGCCACTTCTTACTCACCAACATGCTCATACCGGCTCTCATA
TCTGCTGGATCCGCGCGCGTGGTCAATCTAACCAGCGCCGGGTACCTCGT
CTCGCCATTTCGGTTCGAAGACTGGAACTATTCCAACGGAAAAGAATACG
ACCCGTGGACTGGGTACGGGCAGGCTAAAACAGCCAATATATTATTCACC
TATGGCTTAGGCCAGCGGCTAAAGCATAAGGGAATTGCAGCCGTTGCTGT
TCATCCAGGCTATAATGGAGATACTAAACTTGGCAGTCACCTTACTTGGG
ACGATTACGCTAAGATCTCTGCGGTTGCGATACGGAATACCGGCAAGGAG
TTTGTTTTCGAGGAGCCTCGGTTCAAAACGTATACCCAGATTGCGGCTAC
TCCGTTGATTGCCGCTTTGGATCCGGAGTTGCAGGCTCTGGCGCCGGTGT
ACATGCAGAATAGTGTGGTTAGTGAGGCTGCGGAGCATGCTCGGGATCCT
GCGAGTGTGGATGCTTTGTGGAGGTTGAGTGAGGGGCTTGTTGGGCAGGA
GTTTCGGTATTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003030-T1.utr5p1 | KJC3_003030-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003030-T1.utr3p1 | KJC3_003030-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_3.3 |
| Note | SMCOG1001:short-chain dehydrogenase/reductase SDR |
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF08659 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | putative secondary metabolism biosynthetic enzyme |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:231664..232863 + |
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