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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:263466..264642- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003045-T1 ID=KJC3_003045-T1|Name=KJC3_003045-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1177bp|location=Sequence derived from alignment at ch3:263466..264642- (Aspergillus niger KJC3)
CAATAATAATCTTTTCTTTTATTTTCTATAGGATCCACCTTCTCCTATCT
GAATAGATCCACGAGCCCTTGATGCCGAAAGGAAGAAAAAAACAAGGAAG
ATCAGCAGTATCCAAACCCGCTGATACAGCTGTTGTACCTACGGAGCCTG
TTTCTGCAAACGAACAAATTATCAGAAAAATGAAAGACCTGGTCCTTAGG
TTAGATACTACGGTTAGTAATCTTATCTCGTACAATTACTGATATCCAAA
TTAGTCAGTTTCTCAATCCGAAGTACAGCGATTTGTCCATTAGTTGTGGT
GATGAAGTCTTTCCAGCCCATCGGAACATTCTCTGTCCCCAATCAAAGTA
TTTTGAGGTCGTTTGTAGTAGTCGCTTTAAGGTGAGATACTTGTCATACT
CCAGTTCTTTTCGGGTGCAATCATGAAATTGATATAGAAACTCGTAGGAA
AGCAACGGCGAGATCATCATCGAGAATTGCAATCCTGTGCTCATCAAAAA
GACACTCGAATTCTTGTACACGGGCGACTATACTTATGACGGTGCTCCAA
TCACCCAAGCCCACCTGAACTCGAAGAATAGTTCTGAATCTTCGCCCGAA
ACATGGGCAGAAAATAATTTTGAGCTAGATGCAGACACTGAACAATATCC
AAACCCATCACGAAAAACCAATTCTACTGATTCCCAAAATTGTCAGGCCT
TCTTCCACGCTCAAATGTACGCACAAGGTGATTATTTTCAGATCAACGAG
CTTAAGAAGAAAGCAAAGGATTACTTTATGAAATCTTTCCTGGAACATCC
CGACCAAGATTCATTCAGCTCCTCCGTCGTTGAAGTTTACAGTTCAACAG
GGGAGCACGACCGTGGGCTCAGAGATCTTGTTGTCCAGCTCACGACGGAT
AACCTCAAGATTCTGAGGAATGGGGATAATCCTATACTCTGTGACGGACT
TTTAGAGTCTGTTCCCAAATTTATGCTGGAGGTCTGTCTTTCGACCTTGG
ACAAGTGTGCTGAATATCAGAGGCAGCGGTATGGATACTACTAGAATGTT
CATTGTAATGCACGGAAGGGTCTCGAATAATGTGCAGCTGCTCAACTTTT
TGTTTGATATTCTACTTTATCTGTTTATAGTGAGACAATGCAGGGCTTCA
AGTACCAAAGAGGAGTGAGTAACGGTG back to topCoding sequence (CDS) from alignment at ch3:263466..264642- >KJC3_003045-T1 ID=KJC3_003045-T1|Name=KJC3_003045-T1|organism=Aspergillus niger KJC3|type=CDS|length=2556bp|location=Sequence derived from alignment at ch3:263466..264642- (Aspergillus niger KJC3)
GAAAGCAACGGCGAGATCATCATCGAGAATTGCAATCCTGTGCTCATCAA
AAAGACACTCGAATTCTTGTACACGGGCGACTATACTTATGACGGTGCTC
CAATCACCCAAGCCCACCTGAACTCGAAGAATAGTTCTGAATCTTCGCCC
GAAACATGGGCAGAAAATAATTTTGAGCTAGATGCAGACACTGAACAATA
TCCAAACCCATCACGAAAAACCAATTCTACTGATTCCCAAAATTGTCAGG
CCTTCTTCCACGCTCAAATGTACGCACAAGGTGATTATTTTCAGATCAAC
GAGCTTAAGAAGAAAGCAAAGGATTACTTTATGAAATCTTTCCTGGAACA
TCCCGACCAAGATTCATTCAGCTCCTCCGTCGTTGAAGTTTACAGTTCAA
CAGGGGAGCACGACCGTGGGCTCAGAGATCTTGTTGTCCAGCTCACGACG
GATAACCTCAAGATTCTGAGGAATGGGGATAATCCTATACTCTGTGACGG
ACTTTTAGAGTCTGTTCCCAAATTTATGCTGGAGGTCTGTCTTTCGACCT
TGGACAAGTGTGCTGAATATCAGAGGCAGCGGTATGGATACTACTAGTCA
GTTTCTCAATCCGAAGTACAGCGATTTGTCCATTAGTTGTGGTGATGAAG
TCTTTCCAGCCCATCGGAACATTCTCTGTCCCCAATCAAAGTATTTTGAG
GTCGTTTGTAGTAGTCGCTTTAAGATGCCGAAAGGAAGAAAAAAACAAGG
AAGATCAGCAGTATCCAAACCCGCTGATACAGCTGTTGTACCTACGGAGC
CTGTTTCTGCAAACGAACAAATTATCAGAAAAATGAAAGACCTGGTCCTT
AGGAAAGCAACGGCGAGATCATCATCGAGAATTGCAATCCTGTGCTCATC
AAAAAGACACTCGAATTCTTGTACACGGGCGACTATACTTATGACGGTGC
TCCAATCACCCAAGCCCACCTGAACTCGAAGAATAGTTCTGAATCTTCGC
CCGAAACATGGGCAGAAAATAATTTTGAGCTAGATGCAGACACTGAACAA
TATCCAAACCCATCACGAAAAACCAATTCTACTGATTCCCAAAATTGTCA
GGCCTTCTTCCACGCTCAAATGTACGCACAAGGTGATTATTTTCAGATCA
ACGAGCTTAAGAAGAAAGCAAAGGATTACTTTATGAAATCTTTCCTGGAA
CATCCCGACCAAGATTCATTCAGCTCCTCCGTCGTTGAAGTTTACAGTTC
AACAGGGGAGCACGACCGTGGGCTCAGAGATCTTGTTGTCCAGCTCACGA
CGGATAACCTCAAGATTCTGAGGAATGGGGATAATCCTATACTCTGTGAC
GGACTTTTAGAGTCTGTTCCCAAATTTATGCTGGAGGTCTGTCTTTCGAC
CTTGGACAAGTGTGCTGAATATCAGAGGCAGCGGTATGGATACTACTAGT
CAGTTTCTCAATCCGAAGTACAGCGATTTGTCCATTAGTTGTGGTGATGA
AGTCTTTCCAGCCCATCGGAACATTCTCTGTCCCCAATCAAAGTATTTTG
AGGTCGTTTGTAGTAGTCGCTTTAAGATGCCGAAAGGAAGAAAAAAACAA
GGAAGATCAGCAGTATCCAAACCCGCTGATACAGCTGTTGTACCTACGGA
GCCTGTTTCTGCAAACGAACAAATTATCAGAAAAATGAAAGACCTGGTCC
TTAGGAAAGCAACGGCGAGATCATCATCGAGAATTGCAATCCTGTGCTCA
TCAAAAAGACACTCGAATTCTTGTACACGGGCGACTATACTTATGACGGT
GCTCCAATCACCCAAGCCCACCTGAACTCGAAGAATAGTTCTGAATCTTC
GCCCGAAACATGGGCAGAAAATAATTTTGAGCTAGATGCAGACACTGAAC
AATATCCAAACCCATCACGAAAAACCAATTCTACTGATTCCCAAAATTGT
CAGGCCTTCTTCCACGCTCAAATGTACGCACAAGGTGATTATTTTCAGAT
CAACGAGCTTAAGAAGAAAGCAAAGGATTACTTTATGAAATCTTTCCTGG
AACATCCCGACCAAGATTCATTCAGCTCCTCCGTCGTTGAAGTTTACAGT
TCAACAGGGGAGCACGACCGTGGGCTCAGAGATCTTGTTGTCCAGCTCAC
GACGGATAACCTCAAGATTCTGAGGAATGGGGATAATCCTATACTCTGTG
ACGGACTTTTAGAGTCTGTTCCCAAATTTATGCTGGAGGTCTGTCTTTCG
ACCTTGGACAAGTGTGCTGAATATCAGAGGCAGCGGTATGGATACTACTA
GTCAGTTTCTCAATCCGAAGTACAGCGATTTGTCCATTAGTTGTGGTGAT
GAAGTCTTTCCAGCCCATCGGAACATTCTCTGTCCCCAATCAAAGTATTT
TGAGGTCGTTTGTAGTAGTCGCTTTAAGATGCCGAAAGGAAGAAAAAAAC
AAGGAAGATCAGCAGTATCCAAACCCGCTGATACAGCTGTTGTACCTACG
GAGCCTGTTTCTGCAAACGAACAAATTATCAGAAAAATGAAAGACCTGGT
CCTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003045-T1.utr3p1 | KJC3_003045-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003045-T1.utr5p1 | KJC3_003045-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR011333 |
| DBxref | InterPro:IPR000210 |
| DBxref | PFAM:PF00651 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:263466..264642 - |
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