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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:672322..673562+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003087-T1 ID=KJC3_003087-T1|Name=KJC3_003087-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1241bp|location=Sequence derived from alignment at ch3:672322..673562+ (Aspergillus niger KJC3)
AGAAGATCAACAGGGGTATAACCGAACCATGATGTCGTCAACCCAAGTTC
TTCATGACTATTATGAAATACTCGAGATTCCATGGGAAGCAGATATCGAC
AGCATCAAGACAAGCTATAAGCGCCTGGCAAGAATTAGACATCCTGATAA
GAACTCTAGCTCCACAGCGACTTCTGAATTCCAGTTGGCACGGATATCCC
CACACACTTATGGTTCGGCGTCGGCTAATAATACTATTAGCTCCAGGAAG
CATATTCAACTCTCTTGGACCCCAAAAGCCGTAAAACCTACGACGCTCAG
TATCCATTCACCAAGTTCTACCACACAGCACCTCAGGCAAACCAGGCCAC
GAACTCAGCCAGCGCTGCCAAACACGAGAGAACACACAAAGTCCCAGCAT
TGACGTTACAAATCCGAGAGCTTAAGAATCGTTTGCAAAAGCAAGAAGCT
GACTTGCGTCTGGCAAGGTTACGTTTGGCGAAGCTACGCGGTGAGATAGC
TAGTCTAGACCAGGAGATCAAAATTATCGACAGAGAGAAATCTGGAAAGG
CGACATGGTGGGGATATCTTACTTCAATACTTCAGGGACACCAGGACTCA
GAAAAGGAGAGGATTAAAAGAGACAGTGATCGACTTCAGAAAATCGCAAC
GAGGAGTATCAGAGATAGCGAAGTCCAGCGACAAATAACAGCCGTCCGAG
GTCTTGAAAACGCAATCAACATTACCCGCAGCAGCATCACATCAGCGGAG
CTCAAGATTCTAAAGGAGAAGTACAGAGAAGAACGTGAAGAACAAGAGAA
GAGAAGAATGGAAGAGGAGCGCCTTCGTCAAGAGGCTAATAGGAGAATGG
CGGAGGAGCTTAAGAAACAACAAGAAATACAGGCCCAGCAAGCGAACAGG
GGACATAAGTATCCAAGCCGAGAGCAGGGAGTCAATGGATCGCGGGACTC
CTGTCAGAGTGAAGGAAAGCAGAATTTCCACGATAAAGAAATATGTCATC
ACCAAGGCTGGTGGGGCCGAATTGATGTTCGCTTCTCTTGCAGTCGTTGC
TCATCCGTTACTCGAAAGTTCATATTTCAGTGTCCTGGTTGTGGTAAGCT
GGCTTGTGCTTCATGCAGGGATACTATCAAGGGTGGAAGATTTAGATCAA
ACCGTTTCGGCAAAGATACCTACCACAACAGTTCACAGTTCACAGATTAT
ATGTACTAGTTATTCTGACAGAGATAGCTATTTCGATTAGG back to topCoding sequence (CDS) from alignment at ch3:672322..673562+ >KJC3_003087-T1 ID=KJC3_003087-T1|Name=KJC3_003087-T1|organism=Aspergillus niger KJC3|type=CDS|length=2256bp|location=Sequence derived from alignment at ch3:672322..673562+ (Aspergillus niger KJC3)
ATGATGTCGTCAACCCAAGTTCTTCATGACTATTATGAAATACTCGAGAT
TCCATGGGAAGCAGATATCGACAGCATCAAGACAAGCTATAAGCGCCTGG
CAAGAATTAGACATCCTGATAAGAACTCTAGCTCCACAGCGACTTCTGAA
TTCCAGTTGCTCCAGGAAGCATATTCAACTCTCTTGGACCCCAAAAGCCG
TAAAACCTACGACGCTCAGTATCCATTCACCAAGTTCTACCACACAGCAC
CTCAGGCAAACCAGGCCACGAACTCAGCCAGCGCTGCCAAACACGAGAGA
ACACACAAAGTCCCAGCATTGACGTTACAAATCCGAGAGCTTAAGAATCG
TTTGCAAAAGCAAGAAGCTGACTTGCGTCTGGCAAGGTTACGTTTGGCGA
AGCTACGCGGTGAGATAGCTAGTCTAGACCAGGAGATCAAAATTATCGAC
AGAGAGAAATCTGGAAAGGCGACATGGTGGGGATATCTTACTTCAATACT
TCAGGGACACCAGGACTCAGAAAAGGAGAGGATTAAAAGAGACAGTGATC
GACTTCAGAAAATCGCAACGAGGAGTATCAGAGATAGCGAAGTCCAGCGA
CAAATAACAGCCGTCCGAGGTCTTGAAAACGCAATCAACATTACCCGCAG
CAGCATCACATCAGCGGAGCTCAAGATTCTAAAGGAGAAGTACAGAGAAG
AACGTGAAGAACAAGAGAAGAGAAGAATGGAAGAGGAGCGCCTTCGTCAA
GAGGCTAATAGGAGAATGGCGGAGGAGCTTAAGAAACAACAAGAAATACA
GGCCCAGCAAGCGAACAGGGGACATAAGTATCCAAGCCGAGAGCAGGGAG
TCAATGGATCGCGGGACTCCTGTCAGAGTGAAGGAAAGCAGAATTTCCAC
GATAAAGAAATATGTCATCACCAAGGCTGGTGGGGCCGAATTGATGTTCG
CTTCTCTTGCAGTCGTTGCTCATCCGTTACTCGAAAGTTCATATTTCAGT
GTCCTGGTTGTGGTAAGCTGGCTTGTGCTTCATGCAGGGATACTATCAAG
GGTGGAAGATTTAGATCAAACCGTTTCGGCAAAGATACCTACCACAACAG
TTCACAGTTCACAGATTATATGTACTAGATGATGTCGTCAACCCAAGTTC
TTCATGACTATTATGAAATACTCGAGATTCCATGGGAAGCAGATATCGAC
AGCATCAAGACAAGCTATAAGCGCCTGGCAAGAATTAGACATCCTGATAA
GAACTCTAGCTCCACAGCGACTTCTGAATTCCAGTTGCTCCAGGAAGCAT
ATTCAACTCTCTTGGACCCCAAAAGCCGTAAAACCTACGACGCTCAGTAT
CCATTCACCAAGTTCTACCACACAGCACCTCAGGCAAACCAGGCCACGAA
CTCAGCCAGCGCTGCCAAACACGAGAGAACACACAAAGTCCCAGCATTGA
CGTTACAAATCCGAGAGCTTAAGAATCGTTTGCAAAAGCAAGAAGCTGAC
TTGCGTCTGGCAAGGTTACGTTTGGCGAAGCTACGCGGTGAGATAGCTAG
TCTAGACCAGGAGATCAAAATTATCGACAGAGAGAAATCTGGAAAGGCGA
CATGGTGGGGATATCTTACTTCAATACTTCAGGGACACCAGGACTCAGAA
AAGGAGAGGATTAAAAGAGACAGTGATCGACTTCAGAAAATCGCAACGAG
GAGTATCAGAGATAGCGAAGTCCAGCGACAAATAACAGCCGTCCGAGGTC
TTGAAAACGCAATCAACATTACCCGCAGCAGCATCACATCAGCGGAGCTC
AAGATTCTAAAGGAGAAGTACAGAGAAGAACGTGAAGAACAAGAGAAGAG
AAGAATGGAAGAGGAGCGCCTTCGTCAAGAGGCTAATAGGAGAATGGCGG
AGGAGCTTAAGAAACAACAAGAAATACAGGCCCAGCAAGCGAACAGGGGA
CATAAGTATCCAAGCCGAGAGCAGGGAGTCAATGGATCGCGGGACTCCTG
TCAGAGTGAAGGAAAGCAGAATTTCCACGATAAAGAAATATGTCATCACC
AAGGCTGGTGGGGCCGAATTGATGTTCGCTTCTCTTGCAGTCGTTGCTCA
TCCGTTACTCGAAAGTTCATATTTCAGTGTCCTGGTTGTGGTAAGCTGGC
TTGTGCTTCATGCAGGGATACTATCAAGGGTGGAAGATTTAGATCAAACC
GTTTCGGCAAAGATACCTACCACAACAGTTCACAGTTCACAGATTATATG
TACTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003087-T1.utr5p1 | KJC3_003087-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003087-T1.utr3p1 | KJC3_003087-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018253 |
| DBxref | InterPro:IPR036869 |
| DBxref | InterPro:IPR001623 |
| DBxref | PFAM:PF00226 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:672322..673562 + |
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