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KJC3_003111-T2, KJC3_003111-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003111-T2
Unique NameKJC3_003111-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:798831..800812-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003111-T2 ID=KJC3_003111-T2|Name=KJC3_003111-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1982bp|location=Sequence derived from alignment at ch3:798831..800812- (Aspergillus niger KJC3)
GTCATGTCTCGCGAAACCTCGCCACGTTCAAATCGGATACTCTAGAGATG
ACTGAGAAAGTTCACATCATGGATTGGGAAGCCACAGCTACCAGCCACGG
ATCTATACAGACCGTTGAGCAGGTTTTGCAGGTTGATGAAGCGATTAACT
TTGCAGACCCCCAACGCAAAGAGGATCTACGCTCTCTTGAGCTCGCCGAT
AGCCCCTTAAACGAGATCTCAAGTAGGCTGGAAGAATATCACTCCGTGCT
CAAGTCAGGCTCCAGCATTGCTCTCGGTCGTGGTGACGCGTTATTCAGCA
CACGATTGAGCAAAGGTCTAGAGACTCTCTTCACAACGAATGAACCAGTG
GTTGTCAGCGGTCCCCAAATTACCTGGACTATACTTGTACTCGCTGCGGG
CCCCATATATGATGGCTCAGCCAATCTGGTGATAGGTGATTCCCACGTTC
ATCTCTCGAAAATTGACCATTAATTAATCAGATCTGGCCGACCATGGCGA
TTCCTTTCTCCATGGCCAGGAAGCGATGATTGTCGAAAGGAGTTGGAGGC
GATCAAGAAGACGCGAGAGGAGCTCTCCAATATGAGAGACAAATTAGGAA
GAGGTCAGAGATGTCCTGAAGCACACAACCTACTCATATTTAACTTTTCA
GAAACAGTTTTCGACGAGATGTCTGCGTTAGACCGGGAGCTTGGCCATCG
CCATAGCATTGTTGCCCGACTTCTCAACGATCAAGAACAGGATATGCAGA
AGTCAGAACCGGGCTGTGTCTATATGAACACAGGAGCTACGGACCATGGG
AGTAGCCTAGGGGCCACGGTTCCGGAGACAGCTGGGAGTGCAGCTCCAGA
CAATGGAACCCCTTTCTTCGCAGCCAGTACAAAGCGTGGGTTTGAGCAAG
CAGCCCAGCTGAACCCATTTGCTGATAGCCAGCAAGAACCACCAAACTTG
GCTTCCGCTAGTGAGAGCGAGGGAGTCAGCGGGGTGGAACCGGTAGCTCA
AGAGGCAGACCTTCGAAGACCTGCGTCGCATACAGAGCCATTTATTCAAT
GTCTAAGCGAGTAAGCCTCATGCGAAATACCCACTGCACATTCTGCCTCT
GACGGAGAACAAGTGTGCTCGAGGATCCAGGATTCAGGGAGGTGATGCGC
TGGTCGCCGGATGGTCATTCTTTCTCAATTTCCGCGGAGAATAATTTCCC
TTCCGAGCTGCTTGACAGGTTCGAGACGGAAAGCTTTCAATCCTTGGTTC
GGCGATTGTATTACTATGGATTCCACAAAGGCGGTGGGACCTGGAGACAC
GACCTATTTGCTCGAGGCGTATCGAGTTCCATCTGCCCAGGTCGGCGCAG
CAGCAATTCCCCCTTGACTGGTACCACTCGCCGATCGGGACCTCGCTACA
AAATCATCCGAAGCCATAGAGGTCGTTAGAAGCATTGACAGCCCGGTATT
GGCGTCCCCCCAACTTAACTCGGAGAGCTCATGTTGCTTGCTGAACTGGG
CAGTCTTGAGCTAATATCATCATCGTTGGTCGGACCCGCCTGGCCCAATA
CTCAGCGTATAATGGAAGCGGAGTAGGTAGACAAATATGATTGCATCTTG
TCATCTGTTCGGACGGTCGGAGACAACATGCTGAGATAGGAACCCTTGGT
CCGGGTCCCATGTTGACGACGGCCAGACTTTGGCTGATGTCAGCGATGGT
TGACCTGGCTTGGTGGTTCAGCGTGCTGTAACATGCTAGAGTCAGGAATG
CTAGCTAGAAGGGGAAATGTGAGGCAAGGGCGCTGCTTGAATTCTCGTTA
TTCAGGCGACGTGGCTGGGCGCGAGCAAGGGAGTAAACAAAGTGTACTCC
AGTTAATTAGTTGCGTTAGCTTTGCTTCCTAAGGTATATATGGATAGATG
GTCCAACTTAACATGATATTCTGCAAAGCGCTCGTAAACACCTCCACTTA
TCGATTCAGTCACCACTCAACGAAGGTTGGTC
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Coding sequence (CDS) from alignment at ch3:798831..800812-

>KJC3_003111-T2 ID=KJC3_003111-T2|Name=KJC3_003111-T2|organism=Aspergillus niger KJC3|type=CDS|length=2637bp|location=Sequence derived from alignment at ch3:798831..800812- (Aspergillus niger KJC3)
TTTTCGACGAGATGTCTGCGTTAGACCGGGAGCTTGGCCATCGCCATAGC
ATTGTTGCCCGACTTCTCAACGATCAAGAACAGGATATGCAGAAGTCAGA
ACCGGGCTGTGTCTATATGAACACAGGAGCTACGGACCATGGGAGTAGCC
TAGGGGCCACGGTTCCGGAGACAGCTGGGAGTGCAGCTCCAGACAATGGA
ACCCCTTTCTTCGCAGCCAGTACAAAGCGTGGGTTTGAGCAAGCAGCCCA
GCTGAACCCATTTGCTGATAGCCAGCAAGAACCACCAAACTTGGCTTCCG
CTAGTGAGAGCGAGGGAGTCAGCGGGGTGGAACCGGTAGCTCAAGAGGCA
GACCTTCGAAGACCTGCGTCGCATACAGAGCCATTTATTCAATGTCTAAG
CGAGTAAGAAGCGATGATTGTCGAAAGGAGTTGGAGGCGATCAAGAAGAC
GCGAGAGGAGCTCTCCAATATGAGAGACAAATTAGGAAGAGATGACTGAG
AAAGTTCACATCATGGATTGGGAAGCCACAGCTACCAGCCACGGATCTAT
ACAGACCGTTGAGCAGGTTTTGCAGGTTGATGAAGCGATTAACTTTGCAG
ACCCCCAACGCAAAGAGGATCTACGCTCTCTTGAGCTCGCCGATAGCCCC
TTAAACGAGATCTCAAGTAGGCTGGAAGAATATCACTCCGTGCTCAAGTC
AGGCTCCAGCATTGCTCTCGGTCGTGGTGACGCGTTATTCAGCACACGAT
TGAGCAAAGGTCTAGAGACTCTCTTCACAACGAATGAACCAGTGGTTGTC
AGCGGTCCCCAAATTACCTGGACTATACTTGTACTCGCTGCGGGCCCCAT
ATATGATGGCTCAGCCAATCTGGTGATAGTTTTCGACGAGATGTCTGCGT
TAGACCGGGAGCTTGGCCATCGCCATAGCATTGTTGCCCGACTTCTCAAC
GATCAAGAACAGGATATGCAGAAGTCAGAACCGGGCTGTGTCTATATGAA
CACAGGAGCTACGGACCATGGGAGTAGCCTAGGGGCCACGGTTCCGGAGA
CAGCTGGGAGTGCAGCTCCAGACAATGGAACCCCTTTCTTCGCAGCCAGT
ACAAAGCGTGGGTTTGAGCAAGCAGCCCAGCTGAACCCATTTGCTGATAG
CCAGCAAGAACCACCAAACTTGGCTTCCGCTAGTGAGAGCGAGGGAGTCA
GCGGGGTGGAACCGGTAGCTCAAGAGGCAGACCTTCGAAGACCTGCGTCG
CATACAGAGCCATTTATTCAATGTCTAAGCGAGTAAGAAGCGATGATTGT
CGAAAGGAGTTGGAGGCGATCAAGAAGACGCGAGAGGAGCTCTCCAATAT
GAGAGACAAATTAGGAAGAGATGACTGAGAAAGTTCACATCATGGATTGG
GAAGCCACAGCTACCAGCCACGGATCTATACAGACCGTTGAGCAGGTTTT
GCAGGTTGATGAAGCGATTAACTTTGCAGACCCCCAACGCAAAGAGGATC
TACGCTCTCTTGAGCTCGCCGATAGCCCCTTAAACGAGATCTCAAGTAGG
CTGGAAGAATATCACTCCGTGCTCAAGTCAGGCTCCAGCATTGCTCTCGG
TCGTGGTGACGCGTTATTCAGCACACGATTGAGCAAAGGTCTAGAGACTC
TCTTCACAACGAATGAACCAGTGGTTGTCAGCGGTCCCCAAATTACCTGG
ACTATACTTGTACTCGCTGCGGGCCCCATATATGATGGCTCAGCCAATCT
GGTGATAGTTTTCGACGAGATGTCTGCGTTAGACCGGGAGCTTGGCCATC
GCCATAGCATTGTTGCCCGACTTCTCAACGATCAAGAACAGGATATGCAG
AAGTCAGAACCGGGCTGTGTCTATATGAACACAGGAGCTACGGACCATGG
GAGTAGCCTAGGGGCCACGGTTCCGGAGACAGCTGGGAGTGCAGCTCCAG
ACAATGGAACCCCTTTCTTCGCAGCCAGTACAAAGCGTGGGTTTGAGCAA
GCAGCCCAGCTGAACCCATTTGCTGATAGCCAGCAAGAACCACCAAACTT
GGCTTCCGCTAGTGAGAGCGAGGGAGTCAGCGGGGTGGAACCGGTAGCTC
AAGAGGCAGACCTTCGAAGACCTGCGTCGCATACAGAGCCATTTATTCAA
TGTCTAAGCGAGTAAGAAGCGATGATTGTCGAAAGGAGTTGGAGGCGATC
AAGAAGACGCGAGAGGAGCTCTCCAATATGAGAGACAAATTAGGAAGAGA
TGACTGAGAAAGTTCACATCATGGATTGGGAAGCCACAGCTACCAGCCAC
GGATCTATACAGACCGTTGAGCAGGTTTTGCAGGTTGATGAAGCGATTAA
CTTTGCAGACCCCCAACGCAAAGAGGATCTACGCTCTCTTGAGCTCGCCG
ATAGCCCCTTAAACGAGATCTCAAGTAGGCTGGAAGAATATCACTCCGTG
CTCAAGTCAGGCTCCAGCATTGCTCTCGGTCGTGGTGACGCGTTATTCAG
CACACGATTGAGCAAAGGTCTAGAGACTCTCTTCACAACGAATGAACCAG
TGGTTGTCAGCGGTCCCCAAATTACCTGGACTATACTTGTACTCGCTGCG
GGCCCCATATATGATGGCTCAGCCAATCTGGTGATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003111KJC3_003111Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003111-T2KJC3_003111-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003111-T2.cdsKJC3_003111-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003111-T2.utr3p1KJC3_003111-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003111-T2.exon3KJC3_003111-T2.exon3Aspergillus niger KJC3exon
KJC3_003111-T2.exon2KJC3_003111-T2.exon2Aspergillus niger KJC3exon
KJC3_003111-T2.exon1KJC3_003111-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003111-T2.utr5p1KJC3_003111-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036390
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR000232
DBxrefPFAM:PF00447
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:798831..800812 -
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