You are here

Home

KJC3_003142-T1, KJC3_003142-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003142-T1
Unique NameKJC3_003142-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:1066865..1069014+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003142-T1 ID=KJC3_003142-T1|Name=KJC3_003142-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2150bp|location=Sequence derived from alignment at ch3:1066865..1069014+ (Aspergillus niger KJC3)
CCACCATCACTTCTCTCATCCAACAACCCCCAAAGCTACACTACTCAGTC
TCGCTATAACCACAACAATGGACAGCAACTTTGGCATGTAAGTCACCCAA
ATAATTAGAGTTCTCCAAATGAACCATGCAGGAGGGAAACCTTATACTAA
TGGTATAGCAGTTACATCTCGTCTCCTCTCGTCACCTTCATCGTCGGCCC
TACAAGGAAGGAAATCACTGTACACTCCGATCCCCTAGCCAGCCTATCAT
CGACACTACACTGTCTCCTAAACGGCCCAATGCTAGAGGCAAAGACTCAT
CATGTCGACTGGTCGGAGGTGGTCGATGAGGATACATTCATTCGGTTGTG
TGAGTATGCTTACGTGCGCGATTACACGCCACCGTCGTGCACGGAAAGGT
CTTACCAGACACTTGTATCAGCATCAGGGATGGCAGAGAAACAAACTGAG
GCTGGTGAATGGGGTGGGCACTCCTCCCTATCGATAACAAAGAAGAGCAA
GCGGAAGAATAAAAAAGGCTACCGCTCGAGCCTCGAACCATCATCTGACC
AGCCACCAGCAGAAACCCCTTGTGAGGATTACGCCGACGAACCAATGGCC
CAAGAAGCAGAGCCAGAAGTGGTGCAGACTCCTGATCTCTTCTATGGGTG
TGCATTACCCTACAGAGAAAAAAGTATCTGGAGCCGCCATCTGCGGGACA
GGTTCAAAAATCTCAGCATGCAATATACAAATTCATATGGCAATGTCTTA
TCAAAAACAAAAGAAAAGTTTGCCCCAAGGGGCAACTGTGATCCTAAAAA
TGATTTCACGCCTGTCTTTCTTGGACATGCGAACCTATATATTTTGGCTG
ATAAGTATGGTATTGTTTCGCTTGCGGACTTGGTTCTGGGTAAGCTGGCG
ATGACCTTATCATGCTTCACACTGTATAAAGATGATATAGATGTAGTAGC
TGAGTTGGTTCGGGCTTCTTATCAAGATACAATGCCGAATGATGCTCTTA
GGACATTGGTTACAACCTATATTGTATCTGTTCTTGGGCAAATAGGTGAA
AATACCGGGTTCCAGAAGCTGCTGTCGGAGGGTGGGGATTTTGTCGTTGA
TTTCTGGCAAATTATTTGGAAATAATTTTAGGGGTCTGCTAGAATTACAC
TGTATCTAGAAGGCACAACAGATGGTAGGCTTTCTGCTGATGGAAGCGAT
TGGTTATGTGGTTGAACTTCCAGTTTTGAGGATTTTCCCGCTACTTGTGA
TTTTTTTCTGTTGCCCGGGCTTGTGACTGGTCACTGGGAACATTCTGTGA
CTCTACGGTAGTGTATCTGGCAGCTAACTCTTTCCACGTGACCTGTTTCG
GCTTTGGGTAATACGAAGCCTATATATCATCTTATCAGAATAGTACTCTC
AATATTTTTATAGGAGAATATTGTACCAGCTCCTCCACTGATGGGGGCCA
GTTGCTGTCAGAGTTAAAGAATAGGATTTGGCCAGTTTTCTTATTTCGGA
CCATGATGAATATATCCGCATCACACTCATGACAGTACTCGAAGGATTTG
AAGAACAAGTTATCTTTTCGGCGACTTTGTTGTTGGCGCTTCGATTTCGG
GCTATCTGAAAAACGTTTTTGTATTCTTCGCGGTCGTGCTGCCATGGCGG
ATATCGGTCTTGTCTTACACTGCCAGGCAATGGGGGATCCAAGCTTGTAA
AGGCGCGAAACAGATGTGTGCAGTTTCCATTTCTCTTATAATGGCCGGTC
GGCTGAGAGGACGCGCGGAGAGGGTGAGCTGGGGTGAGCTAGGGTGACGA
TATTAGGTGACCGCGATCCAATTTGTATGCGAAAGGCGAAACGGGGTGGT
AGACAGACAAACTAAATAGACATTATAGCCCATCTCTTACAATGATGGGA
TATAAGGGTGCTCTCTGCTTCAGCTAATACGGCATAAATGAGTGGAGGTC
AGGGATGAAGTACCATACTAGTGTCGGTCTCAAACGCCGGCACACGGGAT
GCCAGTTCACGATCACCTATTCTTTTCACCAAGGGTGAGCATGCAGCACG
GGTGCATACCTATTAGGCTGCCTTTATGGTAGTAGCCCCTCCCATCCAAG
GGTAGTAGGGCAACAAGCGATGGCTGCTACACTAGTTATAAAAATTTTAG
back to top

Coding sequence (CDS) from alignment at ch3:1066865..1069014+

>KJC3_003142-T1 ID=KJC3_003142-T1|Name=KJC3_003142-T1|organism=Aspergillus niger KJC3|type=CDS|length=2655bp|location=Sequence derived from alignment at ch3:1066865..1069014+ (Aspergillus niger KJC3)
ATGGACAGCAACTTTGGCATTTACATCTCGTCTCCTCTCGTCACCTTCAT
CGTCGGCCCTACAAGGAAGGAAATCACTGTACACTCCGATCCCCTAGCCA
GCCTATCATCGACACTACACTGTCTCCTAAACGGCCCAATGCTAGAGGCA
AAGACTCATCATGTCGACTGGTCGGAGGTGGTCGATGAGGATACATTCAT
TCGGTTGTGTGAGTATGCTTACGTGCGCGATTACACGCCACCGTCGTGCA
CGGAAAGGTCTTACCAGACACTTGTATCAGCATCAGGGATGGCAGAGAAA
CAAACTGAGGCTGGTGAATGGGAAACCCCTTGTGAGGATTACGCCGACGA
ACCAATGGCCCAAGAAGCAGAGCCAGAAGTGGTGCAGACTCCTGATCTCT
TCTATGGGTGTGCATTACCCTACAGAGAAAAAAGTATCTGGAGCCGCCAT
CTGCGGGACAGGTTCAAAAATCTCAGCATGCAATATACAAATTCATATGG
CAATGTCTTATCAAAAACAAAAGAAAAGTTTGCCCCAAGGGGCAACTGTG
ATCCTAAAAATGATTTCACGCCTGTCTTTCTTGGACATGCGAACCTATAT
ATTTTGGCTGATAAGTATGGTATTGTTTCGCTTGCGGACTTGGTTCTGGG
TAAGCTGGCGATGACCTTATCATGCTTCACACTGTATAAAGATGATATAG
ATGTAGTAGCTGAGTTGGTTCGGGCTTCTTATCAAGATACAATGCCGAAT
GATGCTCTTAGGACATTGGTTACAACCTATATTGTATCTGTTCTTGGGCA
AATAGGTGAAAATACCGGGTTCCAGAAGCTGCTGTCGGAGGGTGGGGATT
TTGTCGTTGATTTCTGGCAAATTATTTGGAAATAAATGGACAGCAACTTT
GGCATTTACATCTCGTCTCCTCTCGTCACCTTCATCGTCGGCCCTACAAG
GAAGGAAATCACTGTACACTCCGATCCCCTAGCCAGCCTATCATCGACAC
TACACTGTCTCCTAAACGGCCCAATGCTAGAGGCAAAGACTCATCATGTC
GACTGGTCGGAGGTGGTCGATGAGGATACATTCATTCGGTTGTGTGAGTA
TGCTTACGTGCGCGATTACACGCCACCGTCGTGCACGGAAAGGTCTTACC
AGACACTTGTATCAGCATCAGGGATGGCAGAGAAACAAACTGAGGCTGGT
GAATGGGAAACCCCTTGTGAGGATTACGCCGACGAACCAATGGCCCAAGA
AGCAGAGCCAGAAGTGGTGCAGACTCCTGATCTCTTCTATGGGTGTGCAT
TACCCTACAGAGAAAAAAGTATCTGGAGCCGCCATCTGCGGGACAGGTTC
AAAAATCTCAGCATGCAATATACAAATTCATATGGCAATGTCTTATCAAA
AACAAAAGAAAAGTTTGCCCCAAGGGGCAACTGTGATCCTAAAAATGATT
TCACGCCTGTCTTTCTTGGACATGCGAACCTATATATTTTGGCTGATAAG
TATGGTATTGTTTCGCTTGCGGACTTGGTTCTGGGTAAGCTGGCGATGAC
CTTATCATGCTTCACACTGTATAAAGATGATATAGATGTAGTAGCTGAGT
TGGTTCGGGCTTCTTATCAAGATACAATGCCGAATGATGCTCTTAGGACA
TTGGTTACAACCTATATTGTATCTGTTCTTGGGCAAATAGGTGAAAATAC
CGGGTTCCAGAAGCTGCTGTCGGAGGGTGGGGATTTTGTCGTTGATTTCT
GGCAAATTATTTGGAAATAAATGGACAGCAACTTTGGCATTTACATCTCG
TCTCCTCTCGTCACCTTCATCGTCGGCCCTACAAGGAAGGAAATCACTGT
ACACTCCGATCCCCTAGCCAGCCTATCATCGACACTACACTGTCTCCTAA
ACGGCCCAATGCTAGAGGCAAAGACTCATCATGTCGACTGGTCGGAGGTG
GTCGATGAGGATACATTCATTCGGTTGTGTGAGTATGCTTACGTGCGCGA
TTACACGCCACCGTCGTGCACGGAAAGGTCTTACCAGACACTTGTATCAG
CATCAGGGATGGCAGAGAAACAAACTGAGGCTGGTGAATGGGAAACCCCT
TGTGAGGATTACGCCGACGAACCAATGGCCCAAGAAGCAGAGCCAGAAGT
GGTGCAGACTCCTGATCTCTTCTATGGGTGTGCATTACCCTACAGAGAAA
AAAGTATCTGGAGCCGCCATCTGCGGGACAGGTTCAAAAATCTCAGCATG
CAATATACAAATTCATATGGCAATGTCTTATCAAAAACAAAAGAAAAGTT
TGCCCCAAGGGGCAACTGTGATCCTAAAAATGATTTCACGCCTGTCTTTC
TTGGACATGCGAACCTATATATTTTGGCTGATAAGTATGGTATTGTTTCG
CTTGCGGACTTGGTTCTGGGTAAGCTGGCGATGACCTTATCATGCTTCAC
ACTGTATAAAGATGATATAGATGTAGTAGCTGAGTTGGTTCGGGCTTCTT
ATCAAGATACAATGCCGAATGATGCTCTTAGGACATTGGTTACAACCTAT
ATTGTATCTGTTCTTGGGCAAATAGGTGAAAATACCGGGTTCCAGAAGCT
GCTGTCGGAGGGTGGGGATTTTGTCGTTGATTTCTGGCAAATTATTTGGA
AATAA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003142KJC3_003142Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003142-T1KJC3_003142-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003142-T1.utr5p1KJC3_003142-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003142-T1.exon1KJC3_003142-T1.exon1Aspergillus niger KJC3exon
KJC3_003142-T1.exon2KJC3_003142-T1.exon2Aspergillus niger KJC3exon
KJC3_003142-T1.exon3KJC3_003142-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003142-T1.cdsKJC3_003142-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003142-T1.utr3p1KJC3_003142-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR011333
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:1066865..1069014 +
Powered by Drupal