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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1166060..1167959+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003181-T1 ID=KJC3_003181-T1|Name=KJC3_003181-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1900bp|location=Sequence derived from alignment at ch3:1166060..1167959+ (Aspergillus niger KJC3)
TTTGCTCACTGGCTTGCCATGTGCACTGTCGTTCGTTGTTGATACCCTTT
TAATATTCCTGGCTGCGCCAGGCCATATCCCTCATGAGAAACACGCTTCA
AAAAGCTTCACCAATCTAAAGTAATAGAAAAGATTCCCATCAAGCCATCC
ACCAAATGGAGGACACCCTCACCAAAGGCCCGCTCCCACCAGGGGTATAC
AGGTCCAAAATCCCCTTCTGGCGCCTCCTCACCGACCAAGCAGCCATCAC
ACAAGAAGTCCTGGAATACGACTTCCCCGGCAACGGGACCGAAGACGACC
CGTACGTGGTGTCTTGGATCCCGAACGACAACCGCAATCCGATGCTCTTC
GGCCTGGGCCGCAAAGTCGCCATCACTCTCATCGTAGCCTCCTGCACGCT
GACTGTCTCCCTCACCTCCTCTGTATACAGCGGCAGCGTCAGCGAAATCA
CTGCTTACTTCAACGTCAGTGATGAAGTCGCGACAATCGGTCTTTCTCTC
TTCGTTCTCGGCTTCGCCGTCGGTCCCCTCCTCTGGGCCCCCTTCAGCGA
AGTCTTCGGCCGCCAACTCCCCTTCTTCTTCAGCTGCATGGGCATGGCTG
CGTTCTCAGCCGGCTGCGCCGGCGCCCAGAACATCTGGACGCTGTGCATT
CTGCGGTTCTTCGCCGGCGCGTTCGGCTCCGCTCCTTTCACGAACGCAGG
CGGTACCATCTCCGATATGTTCACGGCACGTCAGCGCGGTCTAGCACTGA
GTTTGTACGCCGCTGCGCCGTTCCTCGGCCCCGCGATCGGACCCATCATC
GGTGGGTTTCTGGGCATGCGCGCTGGATGGCGCTGGGTGGAGGGGTTCCT
GGCTGCGTTGGCTGGGTTTATCTGGCTGCTCATGGCAGTTTCGATCCCTG
AGACGTATGCGCCGCGGCTGCTGCGACTCCGCGCGGACAGGCTCTCGCAG
CTGACGGGGCGGGTCTATCGGAGTAAGGTTGAGCTGGATAAGGGGACGGT
TTCCTTGCCGAGGTTGTTGAAGACGACCATGTCTCGGCCATGGGTGTTGC
TGTTCCGTGAGCCGATTGTGCTGCTGTTCGCGCTGTACATTGCTATTGTG
TATGGGACGCTGTACATGTTCTTCGCTGCGTTCCCGATTGTGTATGAGGA
TGTGCGCGGGTGGAATCCCGGTGTGGGCGGGTTGGCCTTCCTGGGAATTG
CGGTAGGGATGATACTGGGGTGTGCGTGCACCATCCCCGCCAATCTGCAT
TACATCAAGGTGCAGGAAAGACATGGAGGGTTTGCGCCGCCAGAGACACG
ACTTATCCAGTGCATGCCAGGGGCGTTGGCGATCCCGATCAGTCAGTTCT
GGTTCGCGTGGACGGATTATCCCTCCATCCATTGGATCGTTAGCATCATT
GCTACCGCGCCGTTCGGGTTCGGGGTTATTTTGATTTACCTCGGCGTTAT
GAACTATCTTATTGACTCGTACACTATCTATGCGGCGTCTGTATTGGCTG
CGAATACGGTGCTGCGGTCGATCTTTGGTGCGGTCTTCCCCATTATAGCG
CCGTATATGTATGATGGGGTGGGCATTCATTGGGCGCCGTCGATCCCGGC
GTTTCTTTCGCTGTTGTGTATGCCTGCGCCGTTTTTGTTTTACAAGTATG
GTGCGATGATCCGGACGCATTGCAAGTATTCTGCCGAGTCGGATCGCTAT
ATGCGAAAGTTGCAGGAAAACGCGAAGCGCAAGTCGGAGGTGGTGGAAAA
GGAGAGGCCCATCAAGGATGAGCCGATGGTGCCGGCGGATGGGGAGCCGG
GCATGTCGCAGGCCGCAGAGCAGAAGTGAGTAAATAGACATACATAGACT
TAGAGTATATAGAGACTTTAGAATACCATAATGTGAGATTTCAGTTGCAT
back to topCoding sequence (CDS) from alignment at ch3:1166060..1167959+ >KJC3_003181-T1 ID=KJC3_003181-T1|Name=KJC3_003181-T1|organism=Aspergillus niger KJC3|type=CDS|length=1674bp|location=Sequence derived from alignment at ch3:1166060..1167959+ (Aspergillus niger KJC3)
ATGGAGGACACCCTCACCAAAGGCCCGCTCCCACCAGGGGTATACAGGTC
CAAAATCCCCTTCTGGCGCCTCCTCACCGACCAAGCAGCCATCACACAAG
AAGTCCTGGAATACGACTTCCCCGGCAACGGGACCGAAGACGACCCGTAC
GTGGTGTCTTGGATCCCGAACGACAACCGCAATCCGATGCTCTTCGGCCT
GGGCCGCAAAGTCGCCATCACTCTCATCGTAGCCTCCTGCACGCTGACTG
TCTCCCTCACCTCCTCTGTATACAGCGGCAGCGTCAGCGAAATCACTGCT
TACTTCAACGTCAGTGATGAAGTCGCGACAATCGGTCTTTCTCTCTTCGT
TCTCGGCTTCGCCGTCGGTCCCCTCCTCTGGGCCCCCTTCAGCGAAGTCT
TCGGCCGCCAACTCCCCTTCTTCTTCAGCTGCATGGGCATGGCTGCGTTC
TCAGCCGGCTGCGCCGGCGCCCAGAACATCTGGACGCTGTGCATTCTGCG
GTTCTTCGCCGGCGCGTTCGGCTCCGCTCCTTTCACGAACGCAGGCGGTA
CCATCTCCGATATGTTCACGGCACGTCAGCGCGGTCTAGCACTGAGTTTG
TACGCCGCTGCGCCGTTCCTCGGCCCCGCGATCGGACCCATCATCGGTGG
GTTTCTGGGCATGCGCGCTGGATGGCGCTGGGTGGAGGGGTTCCTGGCTG
CGTTGGCTGGGTTTATCTGGCTGCTCATGGCAGTTTCGATCCCTGAGACG
TATGCGCCGCGGCTGCTGCGACTCCGCGCGGACAGGCTCTCGCAGCTGAC
GGGGCGGGTCTATCGGAGTAAGGTTGAGCTGGATAAGGGGACGGTTTCCT
TGCCGAGGTTGTTGAAGACGACCATGTCTCGGCCATGGGTGTTGCTGTTC
CGTGAGCCGATTGTGCTGCTGTTCGCGCTGTACATTGCTATTGTGTATGG
GACGCTGTACATGTTCTTCGCTGCGTTCCCGATTGTGTATGAGGATGTGC
GCGGGTGGAATCCCGGTGTGGGCGGGTTGGCCTTCCTGGGAATTGCGGTA
GGGATGATACTGGGGTGTGCGTGCACCATCCCCGCCAATCTGCATTACAT
CAAGGTGCAGGAAAGACATGGAGGGTTTGCGCCGCCAGAGACACGACTTA
TCCAGTGCATGCCAGGGGCGTTGGCGATCCCGATCAGTCAGTTCTGGTTC
GCGTGGACGGATTATCCCTCCATCCATTGGATCGTTAGCATCATTGCTAC
CGCGCCGTTCGGGTTCGGGGTTATTTTGATTTACCTCGGCGTTATGAACT
ATCTTATTGACTCGTACACTATCTATGCGGCGTCTGTATTGGCTGCGAAT
ACGGTGCTGCGGTCGATCTTTGGTGCGGTCTTCCCCATTATAGCGCCGTA
TATGTATGATGGGGTGGGCATTCATTGGGCGCCGTCGATCCCGGCGTTTC
TTTCGCTGTTGTGTATGCCTGCGCCGTTTTTGTTTTACAAGTATGGTGCG
ATGATCCGGACGCATTGCAAGTATTCTGCCGAGTCGGATCGCTATATGCG
AAAGTTGCAGGAAAACGCGAAGCGCAAGTCGGAGGTGGTGGAAAAGGAGA
GGCCCATCAAGGATGAGCCGATGGTGCCGGCGGATGGGGAGCCGGGCATG
TCGCAGGCCGCAGAGCAGAAGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003181-T1.utr5p1 | KJC3_003181-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003181-T1.utr3p1 | KJC3_003181-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1166060..1167959 + |
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