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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1305582..1306744+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003221-T1 ID=KJC3_003221-T1|Name=KJC3_003221-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1163bp|location=Sequence derived from alignment at ch3:1305582..1306744+ (Aspergillus niger KJC3)
ATGGGCTCCAGCTCCAAAAAGAAGAAGGAGAAGCAGAAGGACTTCCAGGT
ACCCCACCCATCCCATACCCACCACCACCACCGCCAGACCCAACATAACT
AACTTCCACCACCAGAAACCCAAGCTCAAAGTCGGCAAAGCCAAAGCCAA
ACCCGACAATTTCACTGACACGAGCTTCAAATCCAAGAGTAAACACCCCC
CAAGAATCCCCACCACCCACCACACTCCGTGGTTAACATAAGAGACAAAA
ACCAGGTATAACCCTAACCCAACAATCCCTAACCCTGCACGCCCCCAGCA
CCACCCACCAATTCACCCACCACGTCTCCCTCCTCAACTCCAAATCCGAC
ACCCAGCGCCGAGACTCCCTCGCGCATCTAACCACCCATCTCACCTCCGC
CCCCACCACCCAACCCCTCCCCATCCCCGTAAGCACCCTCCTCCCCACCC
TCTCCCCCCTAATCCTCGACGCCAGCACAACCGTGCGCACCCAGCTCCTC
AAGCTCCTCCGCACCCTGCCCCCAGCCGACGTGGAAGATCACGTCGCCAG
CCTTATGCCCTACGTGCGCGCCGGCATGACCCACCTGGCCGCTGACATCC
GCGTCACCGCCGTGGATGTCCTCTCGTGGCTGGTCGAGATCGCCGGCGAG
GCTGTGGTCTCGTGCGCCGGCGGCTGGATCAAGACCCTGAATTGCTTTCT
CTCCGTGCTGGGTTGGCATACCGAGGAGAGCTCCAAGTGGTCGAGTAATC
GGGCGGCGTTTGGGAAGGCCGGTGCGAAGGGGAAGCCCATGGTGAAGGTT
TTGGGGGTGTTGGCGGAGTTTTTGGAGGCTGGGATTGGGGAGGATGATGA
TGATGAGATGGAGGTGGATGAGGGTGGAAGTGGGACTGGTGTTGGGTTCC
CGATTGTGCAGACGGAGGTGCATATGGTGCCTAAGTCGGCGCAGCCGTAT
GTGTATTTGAATTTGTTTGGGGCGCCGAGGGATGAGGAAGGGGAGATGTA
TGAGACCAGGGAGGAGAGGTTCCGTGTGTTTAAGGGACGGTTTTTGGTTC
CTGTTGAGCGCGGGTTGGAGAGTGCGAGGCATGATGGCGGGGAGGTTGGA
CGGGCGTCGTCGGCTGTGAGTAAGGTGTTGAAGGAGGCTAGGGGGGTGGA
TTGGGAGGGTTAA back to topCoding sequence (CDS) from alignment at ch3:1305582..1306744+ >KJC3_003221-T1 ID=KJC3_003221-T1|Name=KJC3_003221-T1|organism=Aspergillus niger KJC3|type=CDS|length=3087bp|location=Sequence derived from alignment at ch3:1305582..1306744+ (Aspergillus niger KJC3)
ATGGGCTCCAGCTCCAAAAAGAAGAAGGAGAAGCAGAAGGACTTCCAGAA
ACCCAAGCTCAAAGTCGGCAAAGCCAAAGCCAAACCCGACAATTTCACTG
ACACGAGCTTCAAATCCAAGAGTATAACCCTAACCCAACAATCCCTAACC
CTGCACGCCCCCAGCACCACCCACCAATTCACCCACCACGTCTCCCTCCT
CAACTCCAAATCCGACACCCAGCGCCGAGACTCCCTCGCGCATCTAACCA
CCCATCTCACCTCCGCCCCCACCACCCAACCCCTCCCCATCCCCGTAAGC
ACCCTCCTCCCCACCCTCTCCCCCCTAATCCTCGACGCCAGCACAACCGT
GCGCACCCAGCTCCTCAAGCTCCTCCGCACCCTGCCCCCAGCCGACGTGG
AAGATCACGTCGCCAGCCTTATGCCCTACGTGCGCGCCGGCATGACCCAC
CTGGCCGCTGACATCCGCGTCACCGCCGTGGATGTCCTCTCGTGGCTGGT
CGAGATCGCCGGCGAGGCTGTGGTCTCGTGCGCCGGCGGCTGGATCAAGA
CCCTGAATTGCTTTCTCTCCGTGCTGGGTTGGCATACCGAGGAGAGCTCC
AAGTGGTCGAGTAATCGGGCGGCGTTTGGGAAGGCCGGTGCGAAGGGGAA
GCCCATGGTGAAGGTTTTGGGGGTGTTGGCGGAGTTTTTGGAGGCTGGGA
TTGGGGAGGATGATGATGATGAGATGGAGGTGGATGAGGGTGGAAGTGGG
ACTGGTGTTGGGTTCCCGATTGTGCAGACGGAGGTGCATATGGTGCCTAA
GTCGGCGCAGCCGTATGTGTATTTGAATTTGTTTGGGGCGCCGAGGGATG
AGGAAGGGGAGATGTATGAGACCAGGGAGGAGAGGTTCCGTGTGTTTAAG
GGACGGTTTTTGGTTCCTGTTGAGCGCGGGTTGGAGAGTGCGAGGCATGA
TGGCGGGGAGGTTGGACGGGCGTCGTCGGCTGTGAGTAAGGTGTTGAAGG
AGGCTAGGGGGGTGGATTGGGAGGGTTAAATGGGCTCCAGCTCCAAAAAG
AAGAAGGAGAAGCAGAAGGACTTCCAGAAACCCAAGCTCAAAGTCGGCAA
AGCCAAAGCCAAACCCGACAATTTCACTGACACGAGCTTCAAATCCAAGA
GTATAACCCTAACCCAACAATCCCTAACCCTGCACGCCCCCAGCACCACC
CACCAATTCACCCACCACGTCTCCCTCCTCAACTCCAAATCCGACACCCA
GCGCCGAGACTCCCTCGCGCATCTAACCACCCATCTCACCTCCGCCCCCA
CCACCCAACCCCTCCCCATCCCCGTAAGCACCCTCCTCCCCACCCTCTCC
CCCCTAATCCTCGACGCCAGCACAACCGTGCGCACCCAGCTCCTCAAGCT
CCTCCGCACCCTGCCCCCAGCCGACGTGGAAGATCACGTCGCCAGCCTTA
TGCCCTACGTGCGCGCCGGCATGACCCACCTGGCCGCTGACATCCGCGTC
ACCGCCGTGGATGTCCTCTCGTGGCTGGTCGAGATCGCCGGCGAGGCTGT
GGTCTCGTGCGCCGGCGGCTGGATCAAGACCCTGAATTGCTTTCTCTCCG
TGCTGGGTTGGCATACCGAGGAGAGCTCCAAGTGGTCGAGTAATCGGGCG
GCGTTTGGGAAGGCCGGTGCGAAGGGGAAGCCCATGGTGAAGGTTTTGGG
GGTGTTGGCGGAGTTTTTGGAGGCTGGGATTGGGGAGGATGATGATGATG
AGATGGAGGTGGATGAGGGTGGAAGTGGGACTGGTGTTGGGTTCCCGATT
GTGCAGACGGAGGTGCATATGGTGCCTAAGTCGGCGCAGCCGTATGTGTA
TTTGAATTTGTTTGGGGCGCCGAGGGATGAGGAAGGGGAGATGTATGAGA
CCAGGGAGGAGAGGTTCCGTGTGTTTAAGGGACGGTTTTTGGTTCCTGTT
GAGCGCGGGTTGGAGAGTGCGAGGCATGATGGCGGGGAGGTTGGACGGGC
GTCGTCGGCTGTGAGTAAGGTGTTGAAGGAGGCTAGGGGGGTGGATTGGG
AGGGTTAAATGGGCTCCAGCTCCAAAAAGAAGAAGGAGAAGCAGAAGGAC
TTCCAGAAACCCAAGCTCAAAGTCGGCAAAGCCAAAGCCAAACCCGACAA
TTTCACTGACACGAGCTTCAAATCCAAGAGTATAACCCTAACCCAACAAT
CCCTAACCCTGCACGCCCCCAGCACCACCCACCAATTCACCCACCACGTC
TCCCTCCTCAACTCCAAATCCGACACCCAGCGCCGAGACTCCCTCGCGCA
TCTAACCACCCATCTCACCTCCGCCCCCACCACCCAACCCCTCCCCATCC
CCGTAAGCACCCTCCTCCCCACCCTCTCCCCCCTAATCCTCGACGCCAGC
ACAACCGTGCGCACCCAGCTCCTCAAGCTCCTCCGCACCCTGCCCCCAGC
CGACGTGGAAGATCACGTCGCCAGCCTTATGCCCTACGTGCGCGCCGGCA
TGACCCACCTGGCCGCTGACATCCGCGTCACCGCCGTGGATGTCCTCTCG
TGGCTGGTCGAGATCGCCGGCGAGGCTGTGGTCTCGTGCGCCGGCGGCTG
GATCAAGACCCTGAATTGCTTTCTCTCCGTGCTGGGTTGGCATACCGAGG
AGAGCTCCAAGTGGTCGAGTAATCGGGCGGCGTTTGGGAAGGCCGGTGCG
AAGGGGAAGCCCATGGTGAAGGTTTTGGGGGTGTTGGCGGAGTTTTTGGA
GGCTGGGATTGGGGAGGATGATGATGATGAGATGGAGGTGGATGAGGGTG
GAAGTGGGACTGGTGTTGGGTTCCCGATTGTGCAGACGGAGGTGCATATG
GTGCCTAAGTCGGCGCAGCCGTATGTGTATTTGAATTTGTTTGGGGCGCC
GAGGGATGAGGAAGGGGAGATGTATGAGACCAGGGAGGAGAGGTTCCGTG
TGTTTAAGGGACGGTTTTTGGTTCCTGTTGAGCGCGGGTTGGAGAGTGCG
AGGCATGATGGCGGGGAGGTTGGACGGGCGTCGTCGGCTGTGAGTAAGGT
GTTGAAGGAGGCTAGGGGGGTGGATTGGGAGGGTTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR016024 |
| DBxref | InterPro:IPR024679 |
| DBxref | PFAM:PF12333 |
| Product | rRNA processing protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1305582..1306744 + |
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