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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1387126..1389401+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003241-T1 ID=KJC3_003241-T1|Name=KJC3_003241-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2276bp|location=Sequence derived from alignment at ch3:1387126..1389401+ (Aspergillus niger KJC3)
GCGCAAAAGAGCCTCTCTCCACGTCCTCCGATCCAGGATTGCCCCTGGTG
CTGCACCTTCACTTGCCGTCTTGGACTTGTTTTTTTGGCTGCGTCACACA
GTCTACTGTGCCCTTTCTATATATGTTGCTCTATCGGATGTGAAGCCAAG
GTAAGTTGCTCCCCCTCACGGTAATGGCCGTGCGCGCAGTCCGCTGATTC
TCCCTACCGTGGGTGTTTCCCGCCCCCGGGTTATAGACGCCATTCACTCC
CCACCAGACAGATGGACTCTACGTGTTATTGTCCCTGTGTACCATTTCTT
TGAGACATTCCTTTTCAGTGGGAGTTGGGCACTTGCTTTATTGCTCCCTT
GTTCGGACCAACACAGTCGGGTAGTCGTCTATTACGCCATTGTTCCCTCC
ATCCGCATCCGTTGAGCGACCGGTAAACCCCGACCCAAATTTGCCTTCGA
ACACCCTGCGCAAAACTACATGGAGCCATCGATCTGATACTGGGGATAAC
CGTTCAGCGTTGTGTGGGAGGAGCTTTTCTATCGACTGCAAGTTCCGCTT
TAATTGGCGCGTAATTACTTTGCATACACCAGCAGAGGTATGTCTTGAGT
GTTGTCTTGGACTTTGCAGTATCTGCGCAACCATTGCGTTATTTCATCGG
TACTGCTTGCTATCGAGTACATTATCACGTCGTAATCGATATCTTGGGCT
ACCCTACTCATCTGCATTTCCTGATCGCTTGTTTCCTCAATCGCTCAGTC
TTCGAAGATACTTCGGCTCTAACAATTTCCAGTCCTGCAGGACATTGCCA
AAATGGGCGAATCGAACGGAACAGAAGAAAACGGGAGTTCTTTCCCTTCA
GGAACACTTGCAAAATTGGTACGTTCATGCCCGTATGCTTCCGTCTGCGG
GACAGTAGCGTCTCTGGGCTTTCGTCAATGGATCCTGACAACACCAGACA
TGCGATATCCTCAACGATACCTTCTATAATATAATTCATGATATAGTTGC
AAAGGTGCATCGCGACGAAAAGGTCTCCCGTATGCGCTCAGCGGTGGTCA
CTGCAAGGCAGAAAGCCGATGAAGAGGCATCCAAACGTCGTGAAGAGAGC
GGGAAGCCAGCTGGTGCATTTAAGCCCGGTGATCTCGATCTTGAGGAACT
CAAGGACATCCATGTGGAAACCGATGCAGCTGTCTTTGATGAAGGCAAGG
TTTACCTCAAGGGAAACCCTCTCCAAACCACGAAAGAAATTATCTGCCCG
GAGTGCCGATTGCCTCGTTTATTGTACCCGGTAACGGGTGTTGGGGCTCG
GGCTCCACCAGATCCCTATCGGGAGTATTGTCAGAAGCAGCCGATGATCA
ACAAGCCGGGGCACGATGTTCATGGAAACCCGTTCGCCACGGACAAGTTG
AACCCGAAGAAGAAGAAACAGACAAATACGTCCAATACTCCAGCTTCAAG
TCCTCCCACAACGCCCGACAGTTCCTTTAAACAAGCAGCTCCAGAGAAGG
TGTCCTTCCCGACTGTGAAATGCCCGAACTGCCCGAGATACTTTGTTGTC
ACTCGAGTTGCACAGCACTTGGACAGATGCCTGGGTTTATCAGGGCGACA
GACCAACCGCAACAAGACCCCTATGGAGAATGGTGCCAGTACTCCCAGTT
CTGCTCCACCTAAGCGACCATTAGTGGACGACGACGTCCCAGCAACTCTT
CCGACGAAGAAGAAGAAACTAGGAGCCCCGAAAAAACTGTCAGGGAAGAA
GCCACCTCCGCCCAGCAAACTGAAAAACGGTCTTACGCCAGACATGGCCG
CGGCAAGTGACGCCGCCGGCTCTGGTGATGGAGACATCAAGAGTGAAGCG
AACGGGGATAACTCTTAAGCCTTCGGTCTTTTCTTCCTTCCTTCCTTCCT
TCCTTCTTTCTTTCTCTTCTTTTTCTTTTCACACCTTATACCTTTCTACA
CACCTTTTTCAACATTATTTTACCTTGCTTCTTGCAAACTGCAGACCTGT
TTGCATTGGACAAGGCCTTGGACATAGTCTCCGTTTGCTTAACGATATTG
ACGTAAATACCCGGCATCAACGGCGTCGACGGGAACCTCCTACCTGAGTT
CTCTCGAGTCGAATAGTGGGACATGCTCGGCATCGTCTCCAGCCTTTTTC
TTTCTGTTTCTTATTATAGGTGTTGAGTGCTGTTTTGAATGATAGATTCT
TATGCGGTTGTATGTACAATATTCTGGCAATAGGTCAGTTCGGGCTTTAC
AATCAATCGATTGGTTTAAGATTGGG back to topCoding sequence (CDS) from alignment at ch3:1387126..1389401+ >KJC3_003241-T1 ID=KJC3_003241-T1|Name=KJC3_003241-T1|organism=Aspergillus niger KJC3|type=CDS|length=1974bp|location=Sequence derived from alignment at ch3:1387126..1389401+ (Aspergillus niger KJC3)
ATGGGCGAATCGAACGGAACAGAAGAAAACGGGAGTTCTTTCCCTTCAGG
AACACTTGCAAAATTGACATGCGATATCCTCAACGATACCTTCTATAATA
TAATTCATGATATAGTTGCAAAGGTGCATCGCGACGAAAAGGTCTCCCGT
ATGCGCTCAGCGGTGGTCACTGCAAGGCAGAAAGCCGATGAAGAGGCATC
CAAACGTCGTGAAGAGAGCGGGAAGCCAGCTGGTGCATTTAAGCCCGGTG
ATCTCGATCTTGAGGAACTCAAGGACATCCATGTGGAAACCGATGCAGCT
GTCTTTGATGAAGGCAAGGTTTACCTCAAGGGAAACCCTCTCCAAACCAC
GAAAGAAATTATCTGCCCGGAGTGCCGATTGCCTCGTTTATTGTACCCGG
TAACGGGTGTTGGGGCTCGGGCTCCACCAGATCCCTATCGGGAGTATTGT
CAGAAGCAGCCGATGATCAACAAGCCGGGGCACGATGTTCATGGAAACCC
GTTCGCCACGGACAAGTTGAACCCGAAGAAGAAGAAACAGACAAATACGT
CCAATACTCCAGCTTCAAGTCCTCCCACAACGCCCGACAGTTCCTTTAAA
CAAGCAGCTCCAGAGAAGGTGTCCTTCCCGACTGTGAAATGCCCGAACTG
CCCGAGATACTTTGTTGTCACTCGAGTTGCACAGCACTTGGACAGATGCC
TGGGTTTATCAGGGCGACAGACCAACCGCAACAAGACCCCTATGGAGAAT
GGTGCCAGTACTCCCAGTTCTGCTCCACCTAAGCGACCATTAGTGGACGA
CGACGTCCCAGCAACTCTTCCGACGAAGAAGAAGAAACTAGGAGCCCCGA
AAAAACTGTCAGGGAAGAAGCCACCTCCGCCCAGCAAACTGAAAAACGGT
CTTACGCCAGACATGGCCGCGGCAAGTGACGCCGCCGGCTCTGGTGATGG
AGACATCAAGAGTGAAGCGAACGGGGATAACTCTTAAATGGGCGAATCGA
ACGGAACAGAAGAAAACGGGAGTTCTTTCCCTTCAGGAACACTTGCAAAA
TTGACATGCGATATCCTCAACGATACCTTCTATAATATAATTCATGATAT
AGTTGCAAAGGTGCATCGCGACGAAAAGGTCTCCCGTATGCGCTCAGCGG
TGGTCACTGCAAGGCAGAAAGCCGATGAAGAGGCATCCAAACGTCGTGAA
GAGAGCGGGAAGCCAGCTGGTGCATTTAAGCCCGGTGATCTCGATCTTGA
GGAACTCAAGGACATCCATGTGGAAACCGATGCAGCTGTCTTTGATGAAG
GCAAGGTTTACCTCAAGGGAAACCCTCTCCAAACCACGAAAGAAATTATC
TGCCCGGAGTGCCGATTGCCTCGTTTATTGTACCCGGTAACGGGTGTTGG
GGCTCGGGCTCCACCAGATCCCTATCGGGAGTATTGTCAGAAGCAGCCGA
TGATCAACAAGCCGGGGCACGATGTTCATGGAAACCCGTTCGCCACGGAC
AAGTTGAACCCGAAGAAGAAGAAACAGACAAATACGTCCAATACTCCAGC
TTCAAGTCCTCCCACAACGCCCGACAGTTCCTTTAAACAAGCAGCTCCAG
AGAAGGTGTCCTTCCCGACTGTGAAATGCCCGAACTGCCCGAGATACTTT
GTTGTCACTCGAGTTGCACAGCACTTGGACAGATGCCTGGGTTTATCAGG
GCGACAGACCAACCGCAACAAGACCCCTATGGAGAATGGTGCCAGTACTC
CCAGTTCTGCTCCACCTAAGCGACCATTAGTGGACGACGACGTCCCAGCA
ACTCTTCCGACGAAGAAGAAGAAACTAGGAGCCCCGAAAAAACTGTCAGG
GAAGAAGCCACCTCCGCCCAGCAAACTGAAAAACGGTCTTACGCCAGACA
TGGCCGCGGCAAGTGACGCCGCCGGCTCTGGTGATGGAGACATCAAGAGT
GAAGCGAACGGGGATAACTCTTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003241-T1.utr3p1 | KJC3_003241-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013246 |
| DBxref | PFAM:PF08209 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1387126..1389401 + |
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