|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1389957..1391989+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003242-T1 ID=KJC3_003242-T1|Name=KJC3_003242-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2033bp|location=Sequence derived from alignment at ch3:1389957..1391989+ (Aspergillus niger KJC3)
CATCCACAAATTATGACGCGCATTCCACCATGAGCATCAACCTGCTCAAT
CGCTAGCAATTCTATAAATCCGACTATTGCCGCGACATGAACAACACCAG
CCTCATCTCCTGGGCCGTCCCCAGGCTGAGCCAAATTCTCCCGCTGGACG
AGGAGTCGCTCACGCAGATCATCACCTACGCCGCCAGCCTCTCCAAAGAA
GAAGGCGCCGAACACCTCAAAAACCTTCTGGGCGACTCTCCCGCCGCTTT
CGAATTCATTGCTGCTTTTAGCTCGCGACGAGAACCACCCTCACGATCTA
ACGCACCATCATCAGCTTCGAGCGGCGATTCCACAACTAGAAACAATTAT
TCGGGAACGCAGTCGAAGAGGGGCAAGAAGTCGAAGCCCCCACTACACAG
CGCCGGACCTGTTCGTCGACCAGACAATTTTGGAAACGTGACGGGTGGAT
ACAGAAAGGAGGACCAGGATGAGGACTACATGCCCGTTTCGTCCAGCCGG
AGACAAGATGGGAGCGCGAGGAAAGAAGGCACACTGGATACCGGTCTATC
CCCATCACCGTTGATCTCTTCCCGTGAAGCATCCGCCACTTCTTCGCGAA
ACCAATCGCCAGCCCCGAGACCAACACCGGCTAAAAACCCGCCTTCTGCC
TCTGGCCCTGTGATCTCGGATCTCTTGCCGAATGTCAAGTCGAAGGCGGC
CAAGTCTGCCTCTCGAGCTGGTGGAAGCAGTACAGGGACCGGTTCATCGT
CCAAGGGATCGCTGACTACAAATAATATAAGTGATCTGACGGCTGCCATT
GCCGCTTTGGAGGTATCTACGAATCCGACGCTGAGCGGTGGCGCACGCAA
ATGCACATGCAATGCTAGTATCCATCCTCTCTTTGACCCTGCGCCGAATT
GTCTTAACTGCGGAAAGATCATTTGCTCGCTGGAAGGACTACAGCCGTGT
TCGTTCTGCAAAACGCCTCTCCTGTCGAACGACGAGATTCAGAGCATGAT
ACGAGAGTTGCGGGCGGAGCGCGGACAGGAGAAGATGCGCGCACACAATG
AGAGTGTACATCGGGAGGGTGGTCCTGGGATGATCTCAGGAACTCCCAGT
AAACTGGACGCTGCCAAGGCGCATCGAGACAAGTTGCTTGCGTTTCAGGC
GCAGAACGCCAAGCGGACACGTGTGGTCGACGAGGCGGCTGATTTTGAGA
CTCCGAACGTAGCATCTACGCTGTGGATGACACCCGCGCAGCGAGCACTG
GCGCTTAAGAAACAGCAGCGGATCATGCGAGAGATGGAGGAAAAGGCACG
GCCAGAATGGGAGAAGAAAAAGACCATAATGAGTCTGGACATCAAGGGAG
GAAAGGTGAGGAAGGTCTACCAATCGGCTGGGCCTGCGGAGACGGGCCCC
TCCGCGGAGGAGGAAGCTGAAGCAAAGGCAGAGGAGGAGCTCGGGGATGG
AGAGACCAGAGAAAGCAGCGGTAAAGCGTTCAGCCACAATCCTCTTCTTG
CAGCTGGAGGGCTGTTGCGACCGGTATGGAAGTCTGCAGACGGGGAGCAA
GCGGACACGGCACGCAAAGAGCGAAAACAGACCTGGCGGAGAGTGCAGGA
CGATAATGATGATAACGAGCAATGGATCCTCGATGGCGGTCTCCACGGTT
ACACATGAAGGGCATTTGATATAATAGCTTATCTGGAGTGGCAGGTTACA
TTGCTTGCAAGCCGGACAACAGTGGCCGACCTTCTAGTGCACATGCAGTG
AACAGCACAAAAGCCCAAGCCTCGTTTAGCTTTGTCTGATAAGGCGCGCC
GATATAAGCACGCAATGATTGGGCCACGAGACTCTGGAAATACTACCGCT
CTGACATGGATCGATAAGCAATGCCCTATCGGCATAGCCGCGACAGGAGA
CAAAACACATAGGAGTGGTTATATATATCCTCCGACGGTGTACACGACGT
GAAATGACAGCAGCAATCTTAGCATGAGCATTACCAATCGAAATACAAAT
GATGGGCTCCACCAAATCGGCGGTCAAAGCTAC back to topCoding sequence (CDS) from alignment at ch3:1389957..1391989+ >KJC3_003242-T1 ID=KJC3_003242-T1|Name=KJC3_003242-T1|organism=Aspergillus niger KJC3|type=CDS|length=1572bp|location=Sequence derived from alignment at ch3:1389957..1391989+ (Aspergillus niger KJC3)
ATGAACAACACCAGCCTCATCTCCTGGGCCGTCCCCAGGCTGAGCCAAAT
TCTCCCGCTGGACGAGGAGTCGCTCACGCAGATCATCACCTACGCCGCCA
GCCTCTCCAAAGAAGAAGGCGCCGAACACCTCAAAAACCTTCTGGGCGAC
TCTCCCGCCGCTTTCGAATTCATTGCTGCTTTTAGCTCGCGACGAGAACC
ACCCTCACGATCTAACGCACCATCATCAGCTTCGAGCGGCGATTCCACAA
CTAGAAACAATTATTCGGGAACGCAGTCGAAGAGGGGCAAGAAGTCGAAG
CCCCCACTACACAGCGCCGGACCTGTTCGTCGACCAGACAATTTTGGAAA
CGTGACGGGTGGATACAGAAAGGAGGACCAGGATGAGGACTACATGCCCG
TTTCGTCCAGCCGGAGACAAGATGGGAGCGCGAGGAAAGAAGGCACACTG
GATACCGGTCTATCCCCATCACCGTTGATCTCTTCCCGTGAAGCATCCGC
CACTTCTTCGCGAAACCAATCGCCAGCCCCGAGACCAACACCGGCTAAAA
ACCCGCCTTCTGCCTCTGGCCCTGTGATCTCGGATCTCTTGCCGAATGTC
AAGTCGAAGGCGGCCAAGTCTGCCTCTCGAGCTGGTGGAAGCAGTACAGG
GACCGGTTCATCGTCCAAGGGATCGCTGACTACAAATAATATAAGTGATC
TGACGGCTGCCATTGCCGCTTTGGAGGTATCTACGAATCCGACGCTGAGC
GGTGGCGCACGCAAATGCACATGCAATGCTAGTATCCATCCTCTCTTTGA
CCCTGCGCCGAATTGTCTTAACTGCGGAAAGATCATTTGCTCGCTGGAAG
GACTACAGCCGTGTTCGTTCTGCAAAACGCCTCTCCTGTCGAACGACGAG
ATTCAGAGCATGATACGAGAGTTGCGGGCGGAGCGCGGACAGGAGAAGAT
GCGCGCACACAATGAGAGTGTACATCGGGAGGGTGGTCCTGGGATGATCT
CAGGAACTCCCAGTAAACTGGACGCTGCCAAGGCGCATCGAGACAAGTTG
CTTGCGTTTCAGGCGCAGAACGCCAAGCGGACACGTGTGGTCGACGAGGC
GGCTGATTTTGAGACTCCGAACGTAGCATCTACGCTGTGGATGACACCCG
CGCAGCGAGCACTGGCGCTTAAGAAACAGCAGCGGATCATGCGAGAGATG
GAGGAAAAGGCACGGCCAGAATGGGAGAAGAAAAAGACCATAATGAGTCT
GGACATCAAGGGAGGAAAGGTGAGGAAGGTCTACCAATCGGCTGGGCCTG
CGGAGACGGGCCCCTCCGCGGAGGAGGAAGCTGAAGCAAAGGCAGAGGAG
GAGCTCGGGGATGGAGAGACCAGAGAAAGCAGCGGTAAAGCGTTCAGCCA
CAATCCTCTTCTTGCAGCTGGAGGGCTGTTGCGACCGGTATGGAAGTCTG
CAGACGGGGAGCAAGCGGACACGGCACGCAAAGAGCGAAAACAGACCTGG
CGGAGAGTGCAGGACGATAATGATGATAACGAGCAATGGATCCTCGATGG
CGGTCTCCACGGTTACACATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003242-T1.utr5p1 | KJC3_003242-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003242-T1.utr3p1 | KJC3_003242-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009349 |
| DBxref | PFAM:PF06221 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1389957..1391989 + |
|
