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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1394368..1395754+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003244-T1 ID=KJC3_003244-T1|Name=KJC3_003244-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1387bp|location=Sequence derived from alignment at ch3:1394368..1395754+ (Aspergillus niger KJC3)
CCACACTGCATGAACATATCACCCCAAGACTACTATGGGGATGAGAATGT
AATATCATACCCACCCATATTCATTCGTTAATCTTTAATCAGTTAACTAA
CTTCATACTATTCTCTATATTCATCCCTGAACTTGACAGCTGCCATACAC
TCAAACCATCATGTCCATGTCCATACCATCCATTCCTTAACCTTGAAGCC
TTGCCCATCCCTTAAACCACCACAACAAGAAGAACCCTTTCTCTCCCCTC
CCTTCACCAGACCAACCTCCCCAAAATAAACCCATAAAAATACAAAAAGA
AAAGAAAGAAAAAGAAAGATGGTCTCCCCCCTAACAACAACCTTCATCCA
ATCCACCATCCTAAACGCCATCGCCAACATCCTAGCGCAAATAATAGACC
ATCATCGGAAATCCGTAAGCGCTTCCCCCATCTATCTATCCCATATTACC
CTCCCCCACCCCCTCCCAAAACATCAATATCAATTAACCGAAAAAAAAGA
AAACCACATTCACCCCCAACCTCCCCGCCCTGCTGCAATTCATCACCTAT
GGGATCATAATCGTTCCCCCGAATTTCATCTGGCAGAGGTATCTTGAACG
ACGATATCCGGGGTTTCTTTTCCGGGGATCATCATCATCATCATCATCTA
CTCCCCACTCATCACCACCCACACCCCCATCTACTCACTCCTACGGTAAG
AAAGGAGCAGCAGCAGCAGGAGGAGGAAAAGGAGGGCTCGGAGAAATATA
CATCTCCATCCCGGATCCGACCTCTAATGTTCTTCTGAAAGAAAAGAACC
CAAACTTCCTCCCTGCGCAAAGGAGGCGCAGAGGAGGATGGTATAACTTC
CTCATGAAATTCCTGCTCGATCAGACGGTGGGAAGTGTATTGAATATCGT
GCTGTTTATTGTGTTGATTAATTTGCTTAAGGGGGTGGGAGTGGGGGATG
TTTGGGGGTTGGTTTGTGAGGTATGTTTTCTATTCCGTTTATTCCTATTT
CATTCCATTGCATATCATGAGGTGATATGTGTGGGCTGTGTGTGTGTGTC
TGGTGGGAGCTAATGAATGGTGGGCGTGTAGGACTTCAAACCTATCATGA
TAGCGAGACTCAAATACCGACCTGTTGTCTCGTTGCTCATGTACACGGTT
GTGCCGGTGGATCGGCGCGTCGTGTTTGGGAGTGCGTGTGGGGTGATTTG
GGGGGTGTATTTGAGTTTGTATGCTGTTGTTTAATCCCTTTTTCTACTGT
TGTTGGTATTAGGGTTATAGGAGGGAGAGGTGGTGTGGTCAGTCTTTACA
TTTCTTTTGTCAGCGTGATACCTCGTCCTTGGCCATCATTCTTTATTTCC
TTATTAAATCTATGTATTGTCCGTCGCTTAACTACTT back to topCoding sequence (CDS) from alignment at ch3:1394368..1395754+ >KJC3_003244-T1 ID=KJC3_003244-T1|Name=KJC3_003244-T1|organism=Aspergillus niger KJC3|type=CDS|length=2160bp|location=Sequence derived from alignment at ch3:1394368..1395754+ (Aspergillus niger KJC3)
ATGGTCTCCCCCCTAACAACAACCTTCATCCAATCCACCATCCTAAACGC
CATCGCCAACATCCTAGCGCAAATAATAGACCATCATCGGAAATCCAAAA
CCACATTCACCCCCAACCTCCCCGCCCTGCTGCAATTCATCACCTATGGG
ATCATAATCGTTCCCCCGAATTTCATCTGGCAGAGGTATCTTGAACGACG
ATATCCGGGGTTTCTTTTCCGGGGATCATCATCATCATCATCATCTACTC
CCCACTCATCACCACCCACACCCCCATCTACTCACTCCTACGGTAAGAAA
GGAGCAGCAGCAGCAGGAGGAGGAAAAGGAGGGCTCGGAGAAATATACAT
CTCCATCCCGGATCCGACCTCTAATGTTCTTCTGAAAGAAAAGAACCCAA
ACTTCCTCCCTGCGCAAAGGAGGCGCAGAGGAGGATGGTATAACTTCCTC
ATGAAATTCCTGCTCGATCAGACGGTGGGAAGTGTATTGAATATCGTGCT
GTTTATTGTGTTGATTAATTTGCTTAAGGGGGTGGGAGTGGGGGATGTTT
GGGGGTTGGTTTGTGAGGACTTCAAACCTATCATGATAGCGAGACTCAAA
TACCGACCTGTTGTCTCGTTGCTCATGTACACGGTTGTGCCGGTGGATCG
GCGCGTCGTGTTTGGGAGTGCGTGTGGGGTGATTTGGGGGGTGTATTTGA
GTTTGTATGCTGTTGTTTAAATGGTCTCCCCCCTAACAACAACCTTCATC
CAATCCACCATCCTAAACGCCATCGCCAACATCCTAGCGCAAATAATAGA
CCATCATCGGAAATCCAAAACCACATTCACCCCCAACCTCCCCGCCCTGC
TGCAATTCATCACCTATGGGATCATAATCGTTCCCCCGAATTTCATCTGG
CAGAGGTATCTTGAACGACGATATCCGGGGTTTCTTTTCCGGGGATCATC
ATCATCATCATCATCTACTCCCCACTCATCACCACCCACACCCCCATCTA
CTCACTCCTACGGTAAGAAAGGAGCAGCAGCAGCAGGAGGAGGAAAAGGA
GGGCTCGGAGAAATATACATCTCCATCCCGGATCCGACCTCTAATGTTCT
TCTGAAAGAAAAGAACCCAAACTTCCTCCCTGCGCAAAGGAGGCGCAGAG
GAGGATGGTATAACTTCCTCATGAAATTCCTGCTCGATCAGACGGTGGGA
AGTGTATTGAATATCGTGCTGTTTATTGTGTTGATTAATTTGCTTAAGGG
GGTGGGAGTGGGGGATGTTTGGGGGTTGGTTTGTGAGGACTTCAAACCTA
TCATGATAGCGAGACTCAAATACCGACCTGTTGTCTCGTTGCTCATGTAC
ACGGTTGTGCCGGTGGATCGGCGCGTCGTGTTTGGGAGTGCGTGTGGGGT
GATTTGGGGGGTGTATTTGAGTTTGTATGCTGTTGTTTAAATGGTCTCCC
CCCTAACAACAACCTTCATCCAATCCACCATCCTAAACGCCATCGCCAAC
ATCCTAGCGCAAATAATAGACCATCATCGGAAATCCAAAACCACATTCAC
CCCCAACCTCCCCGCCCTGCTGCAATTCATCACCTATGGGATCATAATCG
TTCCCCCGAATTTCATCTGGCAGAGGTATCTTGAACGACGATATCCGGGG
TTTCTTTTCCGGGGATCATCATCATCATCATCATCTACTCCCCACTCATC
ACCACCCACACCCCCATCTACTCACTCCTACGGTAAGAAAGGAGCAGCAG
CAGCAGGAGGAGGAAAAGGAGGGCTCGGAGAAATATACATCTCCATCCCG
GATCCGACCTCTAATGTTCTTCTGAAAGAAAAGAACCCAAACTTCCTCCC
TGCGCAAAGGAGGCGCAGAGGAGGATGGTATAACTTCCTCATGAAATTCC
TGCTCGATCAGACGGTGGGAAGTGTATTGAATATCGTGCTGTTTATTGTG
TTGATTAATTTGCTTAAGGGGGTGGGAGTGGGGGATGTTTGGGGGTTGGT
TTGTGAGGACTTCAAACCTATCATGATAGCGAGACTCAAATACCGACCTG
TTGTCTCGTTGCTCATGTACACGGTTGTGCCGGTGGATCGGCGCGTCGTG
TTTGGGAGTGCGTGTGGGGTGATTTGGGGGGTGTATTTGAGTTTGTATGC
TGTTGTTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003244-T1.utr5p1 | KJC3_003244-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003244-T1.utr3p1 | KJC3_003244-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007248 |
| DBxref | PFAM:PF04117 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1394368..1395754 + |
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