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KJC3_003260-T1, KJC3_003260-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003260-T1
Unique NameKJC3_003260-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:1447027..1448159-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003260-T1 ID=KJC3_003260-T1|Name=KJC3_003260-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1133bp|location=Sequence derived from alignment at ch3:1447027..1448159- (Aspergillus niger KJC3)
GGTGACGCCCGCTCTGGTAGTTTAGGCTTTGAAACTCATTGGGGGGTTCT
GACACTTTGAACGCGGATTCTCTGTTTGCTATCCGTGCCTGACTTACATT
CTTGACAATTACCATCTCACTAAGCTCGCCAGAAACCTCCTACTCAGCAC
TCCGGGGCGCCGCCTATACGTCACAACCCCCATCATGGTGATTATCAACC
TTGTCCAGGGGATCGGTTTACAATCCAAGCTAACAGAACCAGTCTCAATC
ATTGCGTCCGTACCTTTTGGCTGTTAGATCTTCATTGACGGCAGCACTCG
CGATATCGAACTTCGCTTCTCAAACCTCCGAAAGACAGTACGTTGGGCCG
GTTCCCATCCCCTCACCCTTTTGGGTCGGACCAGGCTAATTATGTATCTG
GATAGCAATGTCCCCGAAATTGAAGCCGCAACTTCTCCGGAACTACTTCT
CAACCCCCTTACAATCTCCCGGAATGAGAACGAGAGGGTCCTTATCGAGC
CCAGCGTGAACAGTGTCCGTGTCAGCATCCGAATCAAGCAGGCAGATGAG
ATCGAACATATCTTGGTCCACAAGTTCACTAGGTTCCTGACGCAGCGCGC
GGAATCCTTCTTCATTCTACGGAGAAAGCCAGTGAAGGGATATGACATTT
CATTCCTCATTACGAACTTCCATACTGAACAGATGCTGAAACACAAATTG
GTGGACTTCATCATTCAATTGTATGTTTCATCTGCCTTGTCCATATGTCA
TTCGATCAATGAGAGGCTAACGATTTCTTCGTCTAATAGTATGGAGGAAG
TGGATAAGGAAATCTCGGAAATGAAGCTCTTCGTATGTGTCCATGTCCAT
CTGATTGATGGAGGCTTCTAACCCACATTTGCTGTAGTTGAATGCTCGTG
CTCGTTTCGTTGCTGAGTCGTTCTTGACACCGGTAAGTCGCCCTGGCTAC
TTCAGCTGAACCTGGCTGATAAAATTACAGTTTGATTAGATCGCCCTAGC
TTCATGGTTGGCACATGACCTTGATTTCCCCTTCCTCTCAGGAACAATTC
TTGTACAGAAGTTTGATGCTTGTTCCTTTCTGCAGTCGTCCATATTATAT
CTCGAAATCAAATTTGTAGCGACCAGTACATCC
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Coding sequence (CDS) from alignment at ch3:1447027..1448159-

>KJC3_003260-T1 ID=KJC3_003260-T1|Name=KJC3_003260-T1|organism=Aspergillus niger KJC3|type=CDS|length=3060bp|location=Sequence derived from alignment at ch3:1447027..1448159- (Aspergillus niger KJC3)
TTTGATTAGTTGAATGCTCGTGCTCGTTTCGTTGCTGAGTCGTTCTTGAC
ACCGTATGGAGGAAGTGGATAAGGAAATCTCGGAAATGAAGCTCTTCCAA
TGTCCCCGAAATTGAAGCCGCAACTTCTCCGGAACTACTTCTCAACCCCC
TTACAATCTCCCGGAATGAGAACGAGAGGGTCCTTATCGAGCCCAGCGTG
AACAGTGTCCGTGTCAGCATCCGAATCAAGCAGGCAGATGAGATCGAACA
TATCTTGGTCCACAAGTTCACTAGGTTCCTGACGCAGCGCGCGGAATCCT
TCTTCATTCTACGGAGAAAGCCAGTGAAGGGATATGACATTTCATTCCTC
ATTACGAACTTCCATACTGAACAGATGCTGAAACACAAATTGGTGGACTT
CATCATTCAATTTCTCAATCATTGCGTCCGTACCTTTTGGCTGTTAGATC
TTCATTGACGGCAGCACTCGCGATATCGAACTTCGCTTCTCAAACCTCCG
AAAGACAATGTTTGATTAGTTGAATGCTCGTGCTCGTTTCGTTGCTGAGT
CGTTCTTGACACCGTATGGAGGAAGTGGATAAGGAAATCTCGGAAATGAA
GCTCTTCCAATGTCCCCGAAATTGAAGCCGCAACTTCTCCGGAACTACTT
CTCAACCCCCTTACAATCTCCCGGAATGAGAACGAGAGGGTCCTTATCGA
GCCCAGCGTGAACAGTGTCCGTGTCAGCATCCGAATCAAGCAGGCAGATG
AGATCGAACATATCTTGGTCCACAAGTTCACTAGGTTCCTGACGCAGCGC
GCGGAATCCTTCTTCATTCTACGGAGAAAGCCAGTGAAGGGATATGACAT
TTCATTCCTCATTACGAACTTCCATACTGAACAGATGCTGAAACACAAAT
TGGTGGACTTCATCATTCAATTTCTCAATCATTGCGTCCGTACCTTTTGG
CTGTTAGATCTTCATTGACGGCAGCACTCGCGATATCGAACTTCGCTTCT
CAAACCTCCGAAAGACAATGTTTGATTAGTTGAATGCTCGTGCTCGTTTC
GTTGCTGAGTCGTTCTTGACACCGTATGGAGGAAGTGGATAAGGAAATCT
CGGAAATGAAGCTCTTCCAATGTCCCCGAAATTGAAGCCGCAACTTCTCC
GGAACTACTTCTCAACCCCCTTACAATCTCCCGGAATGAGAACGAGAGGG
TCCTTATCGAGCCCAGCGTGAACAGTGTCCGTGTCAGCATCCGAATCAAG
CAGGCAGATGAGATCGAACATATCTTGGTCCACAAGTTCACTAGGTTCCT
GACGCAGCGCGCGGAATCCTTCTTCATTCTACGGAGAAAGCCAGTGAAGG
GATATGACATTTCATTCCTCATTACGAACTTCCATACTGAACAGATGCTG
AAACACAAATTGGTGGACTTCATCATTCAATTTCTCAATCATTGCGTCCG
TACCTTTTGGCTGTTAGATCTTCATTGACGGCAGCACTCGCGATATCGAA
CTTCGCTTCTCAAACCTCCGAAAGACAATGTTTGATTAGTTGAATGCTCG
TGCTCGTTTCGTTGCTGAGTCGTTCTTGACACCGTATGGAGGAAGTGGAT
AAGGAAATCTCGGAAATGAAGCTCTTCCAATGTCCCCGAAATTGAAGCCG
CAACTTCTCCGGAACTACTTCTCAACCCCCTTACAATCTCCCGGAATGAG
AACGAGAGGGTCCTTATCGAGCCCAGCGTGAACAGTGTCCGTGTCAGCAT
CCGAATCAAGCAGGCAGATGAGATCGAACATATCTTGGTCCACAAGTTCA
CTAGGTTCCTGACGCAGCGCGCGGAATCCTTCTTCATTCTACGGAGAAAG
CCAGTGAAGGGATATGACATTTCATTCCTCATTACGAACTTCCATACTGA
ACAGATGCTGAAACACAAATTGGTGGACTTCATCATTCAATTTCTCAATC
ATTGCGTCCGTACCTTTTGGCTGTTAGATCTTCATTGACGGCAGCACTCG
CGATATCGAACTTCGCTTCTCAAACCTCCGAAAGACAATGTTTGATTAGT
TGAATGCTCGTGCTCGTTTCGTTGCTGAGTCGTTCTTGACACCGTATGGA
GGAAGTGGATAAGGAAATCTCGGAAATGAAGCTCTTCCAATGTCCCCGAA
ATTGAAGCCGCAACTTCTCCGGAACTACTTCTCAACCCCCTTACAATCTC
CCGGAATGAGAACGAGAGGGTCCTTATCGAGCCCAGCGTGAACAGTGTCC
GTGTCAGCATCCGAATCAAGCAGGCAGATGAGATCGAACATATCTTGGTC
CACAAGTTCACTAGGTTCCTGACGCAGCGCGCGGAATCCTTCTTCATTCT
ACGGAGAAAGCCAGTGAAGGGATATGACATTTCATTCCTCATTACGAACT
TCCATACTGAACAGATGCTGAAACACAAATTGGTGGACTTCATCATTCAA
TTTCTCAATCATTGCGTCCGTACCTTTTGGCTGTTAGATCTTCATTGACG
GCAGCACTCGCGATATCGAACTTCGCTTCTCAAACCTCCGAAAGACAATG
TTTGATTAGTTGAATGCTCGTGCTCGTTTCGTTGCTGAGTCGTTCTTGAC
ACCGTATGGAGGAAGTGGATAAGGAAATCTCGGAAATGAAGCTCTTCCAA
TGTCCCCGAAATTGAAGCCGCAACTTCTCCGGAACTACTTCTCAACCCCC
TTACAATCTCCCGGAATGAGAACGAGAGGGTCCTTATCGAGCCCAGCGTG
AACAGTGTCCGTGTCAGCATCCGAATCAAGCAGGCAGATGAGATCGAACA
TATCTTGGTCCACAAGTTCACTAGGTTCCTGACGCAGCGCGCGGAATCCT
TCTTCATTCTACGGAGAAAGCCAGTGAAGGGATATGACATTTCATTCCTC
ATTACGAACTTCCATACTGAACAGATGCTGAAACACAAATTGGTGGACTT
CATCATTCAATTTCTCAATCATTGCGTCCGTACCTTTTGGCTGTTAGATC
TTCATTGACGGCAGCACTCGCGATATCGAACTTCGCTTCTCAAACCTCCG
AAAGACAATG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015629actin cytoskeleton
GO:0005885Arp2/3 protein complex
Vocabulary: Biological Process
TermDefinition
GO:0030833regulation of actin filament polymerization
GO:0034314Arp2/3 complex-mediated actin nucleation
GO:0030041actin filament polymerization
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ARPC4KJC3_003260Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003260-T1KJC3_003260-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003260-T1.cdsKJC3_003260-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003260-T1.utr3p1KJC3_003260-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003260-T1.exon6KJC3_003260-T1.exon6Aspergillus niger KJC3exon
KJC3_003260-T1.exon5KJC3_003260-T1.exon5Aspergillus niger KJC3exon
KJC3_003260-T1.exon4KJC3_003260-T1.exon4Aspergillus niger KJC3exon
KJC3_003260-T1.exon3KJC3_003260-T1.exon3Aspergillus niger KJC3exon
KJC3_003260-T1.exon2KJC3_003260-T1.exon2Aspergillus niger KJC3exon
KJC3_003260-T1.exon1KJC3_003260-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003260-T1.utr5p1KJC3_003260-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09265CCT
DBxrefInterPro:IPR034666
DBxrefInterPro:IPR008384
DBxrefPFAM:PF05856
ProductActin- protein 2/3 complex subunit 4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:1447027..1448159 -
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