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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1480338..1482478- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003272-T1 ID=KJC3_003272-T1|Name=KJC3_003272-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2141bp|location=Sequence derived from alignment at ch3:1480338..1482478- (Aspergillus niger KJC3)
TTTACAATATATTTTATTCTATATTTTATTATTTTTCCTGTCAACCTTGC
TCCCCACTTTTCGCATATCTCCACTATTCCACACCCTCAATCATCGTCTC
TCCTTCTTTTTCCCTCTGCCATCCACGCGCTTTGGTCTATAAACCCCGTT
CACATCCTCCTCCATCCTCCCCCCCTGTTCCCATCAAACCCACCCCCACT
TGTACCTTGCCTCCAATTCCATTGGATCCATCTTTCGTTGCCTCTTGACT
CGAACTCGCTTTTATATATCTACCCTCGGTAGCCTCCTTCTTGCTATAAG
CTACCTCTTACCTTCCCACTCGAGTTCCAACCTTATATACATACATACAT
CTATATACTACCCTCCTCCCTCTATACCACCTCACCTCCATCACCACTCA
CCTATTACCTTCCTACCTATCTACTACCTCAACACTCAACATGGATCTCG
CCAGCCTCATCTCCCACCCGGGACCCGATCCCATCATGAAGTCTAGAGCC
TCATACAGCCCTCCCATGACTTCCTACAAGCGCTCCATCGAACACACCTC
GGACTCCTACTTCCCCTCCGTCCCGATCTCCTACACCCGCTCCCCGCAGC
CTCCTCTCTCCCCGCCTGTCGAGGACCAGTCCCCCAAGTGCTCTCTTCCC
TCCATCTCTACCTTGCTCGAGGGCGCAGATGGCGCAGCTATGCATGCAGC
AAGTATGGCCCCCAATGCTTAGGGAAATTGTCCGGAGAAGACCGAAGGAG
TCAATGCTGACAAGAGATTCCTGCAGAGCGCACTAGAATGACCCCTCCTC
TGCAACGCGACCTTGATTCCCGCCAACAGTCGCAAGCATATGACCTCAAA
GCTAACGGCCCCCAAATCGCCTTGCCCCCCACCCCCCCATTGCGCCCCGG
TTCTAGCTTCCACAGCGCCGGACACTCCCCCGCCTCCTCCATCTCTGCTG
CCAGCGATGCTGCTGCGCCCAAGCGCTCCGACTCCTACCCTCAAGTGCCC
ATGGCTCTGCCTAGCCCCTCGGATCGCTCGTCCATCTCCAGCCAGGGTTC
AGTTCAGGGTGTCTCCAGTGCTTCCTACGCTTCTCCCGCTCCCAGCGTCT
CTTCCTACTCCTCTCCCATTGAGCCTTCGGCCTCGTCCGCCATGTTCTAC
CAACGCACGGCTCCCTCCACTTCCGCCGCTCCTCTCCCGACGCCAGCAGC
ACCGCAACAGATTATCTCCCCTGTGAACCCTGCCTGGCAGCACCACCACT
ACTTCCCTCCCTCCAGCACCACGCCCTACCAGCAGAACCATGATCGCTAT
ATCTGCCGCACCTGCCACAAGGCCTTCTCGAGACCCTCCAGCCTGCGCAT
CCACTCCCACAGCCACACGGGCGAGAAGCCCTTCCGCTGCACCCACGCCG
GTTGTGGGAAGGCCTTCAGCGTGCGCAGCAACATGAAGCGTCATGAGCGT
GGCTGCCACAGTGGTCGGCCCGTCGCAACCGCCATGGTTTAAAGTCCGGC
ACTGGGTGTCCGGTCACCTTGATGCGCCTCGAAGGCAGTCAAGGCAAGAA
AAAAGCTCGACCAAACCAAAGAGCAATACGCCAAACTAAAAAAAAAGGAC
CATACCACTCCATACAACCAACCTCCCTGAACCCAGCGACCATCTGCTCT
GTTTTCTTCTTTGAGTGATACCCTTTGTGCATGTTTTATATTCACTTCTT
CTGATCCTCACGCACCCGGGAATCCATGGGACTTGGGTGTGTTGTGATGG
GAATCCCCATTTTTTCTTTCTTCACTTCCACCTGTGTATATTTGGATGTC
TTCTTCCTTTTTTTATATTTTACTGTCCATGTGAAAAGGAGCAGGCGTCG
CTGGTTTTCGGTCTGGGAAATGCGAAGCATAAGATTCGGGAGGAGAATCA
TTGGGCATGGGATTATCGGAGTCTCAACTCTGGTTGAATTGTTTCTTTTC
TTCTGTGTTTCCTATATCTTTTCCTATTTTTTCCTTTTTTTCCTTGTGTC
ATCTCATTTCCTTTGTTATGATGTGACATGACCTTGTGAACAAGAGATGT
TCCTCCTATACGATTATAACAAACGCACAACAGCTTTGTTGTACTCTGGT
ATGAAGAAACCAATTAAGAGCATAGACTCGCATTCAAGATG back to topCoding sequence (CDS) from alignment at ch3:1480338..1482478- >KJC3_003272-T1 ID=KJC3_003272-T1|Name=KJC3_003272-T1|organism=Aspergillus niger KJC3|type=CDS|length=1956bp|location=Sequence derived from alignment at ch3:1480338..1482478- (Aspergillus niger KJC3)
AGCGCACTAGAATGACCCCTCCTCTGCAACGCGACCTTGATTCCCGCCAA
CAGTCGCAAGCATATGACCTCAAAGCTAACGGCCCCCAAATCGCCTTGCC
CCCCACCCCCCCATTGCGCCCCGGTTCTAGCTTCCACAGCGCCGGACACT
CCCCCGCCTCCTCCATCTCTGCTGCCAGCGATGCTGCTGCGCCCAAGCGC
TCCGACTCCTACCCTCAAGTGCCCATGGCTCTGCCTAGCCCCTCGGATCG
CTCGTCCATCTCCAGCCAGGGTTCAGTTCAGGGTGTCTCCAGTGCTTCCT
ACGCTTCTCCCGCTCCCAGCGTCTCTTCCTACTCCTCTCCCATTGAGCCT
TCGGCCTCGTCCGCCATGTTCTACCAACGCACGGCTCCCTCCACTTCCGC
CGCTCCTCTCCCGACGCCAGCAGCACCGCAACAGATTATCTCCCCTGTGA
ACCCTGCCTGGCAGCACCACCACTACTTCCCTCCCTCCAGCACCACGCCC
TACCAGCAGAACCATGATCGCTATATCTGCCGCACCTGCCACAAGGCCTT
CTCGAGACCCTCCAGCCTGCGCATCCACTCCCACAGCCACACGGGCGAGA
AGCCCTTCCGCTGCACCCACGCCGGTTGTGGGAAGGCCTTCAGCGTGCGC
AGCAACATGAAGCGTCATGAGCGTGGCTGCCACAGTGGTCGGCCCGTCGC
AACCGCCATGGTTTAAATGGATCTCGCCAGCCTCATCTCCCACCCGGGAC
CCGATCCCATCATGAAGTCTAGAGCCTCATACAGCCCTCCCATGACTTCC
TACAAGCGCTCCATCGAACACACCTCGGACTCCTACTTCCCCTCCGTCCC
GATCTCCTACACCCGCTCCCCGCAGCCTCCTCTCTCCCCGCCTGTCGAGG
ACCAGTCCCCCAAGTGCTCTCTTCCCTCCATCTCTACCTTGCTCGAGGGC
GCAGATGGCGCAGCTATGCATGCAGCAAAGCGCACTAGAATGACCCCTCC
TCTGCAACGCGACCTTGATTCCCGCCAACAGTCGCAAGCATATGACCTCA
AAGCTAACGGCCCCCAAATCGCCTTGCCCCCCACCCCCCCATTGCGCCCC
GGTTCTAGCTTCCACAGCGCCGGACACTCCCCCGCCTCCTCCATCTCTGC
TGCCAGCGATGCTGCTGCGCCCAAGCGCTCCGACTCCTACCCTCAAGTGC
CCATGGCTCTGCCTAGCCCCTCGGATCGCTCGTCCATCTCCAGCCAGGGT
TCAGTTCAGGGTGTCTCCAGTGCTTCCTACGCTTCTCCCGCTCCCAGCGT
CTCTTCCTACTCCTCTCCCATTGAGCCTTCGGCCTCGTCCGCCATGTTCT
ACCAACGCACGGCTCCCTCCACTTCCGCCGCTCCTCTCCCGACGCCAGCA
GCACCGCAACAGATTATCTCCCCTGTGAACCCTGCCTGGCAGCACCACCA
CTACTTCCCTCCCTCCAGCACCACGCCCTACCAGCAGAACCATGATCGCT
ATATCTGCCGCACCTGCCACAAGGCCTTCTCGAGACCCTCCAGCCTGCGC
ATCCACTCCCACAGCCACACGGGCGAGAAGCCCTTCCGCTGCACCCACGC
CGGTTGTGGGAAGGCCTTCAGCGTGCGCAGCAACATGAAGCGTCATGAGC
GTGGCTGCCACAGTGGTCGGCCCGTCGCAACCGCCATGGTTTAAATGGAT
CTCGCCAGCCTCATCTCCCACCCGGGACCCGATCCCATCATGAAGTCTAG
AGCCTCATACAGCCCTCCCATGACTTCCTACAAGCGCTCCATCGAACACA
CCTCGGACTCCTACTTCCCCTCCGTCCCGATCTCCTACACCCGCTCCCCG
CAGCCTCCTCTCTCCCCGCCTGTCGAGGACCAGTCCCCCAAGTGCTCTCT
TCCCTCCATCTCTACCTTGCTCGAGGGCGCAGATGGCGCAGCTATGCATG
CAGCAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003272-T1.utr3p1 | KJC3_003272-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003272-T1.utr5p1 | KJC3_003272-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036236 |
| DBxref | InterPro:IPR013087 |
| DBxref | PFAM:PF00096 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1480338..1482478 - |
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