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KJC3_003297-T1, KJC3_003297-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003297-T1
Unique NameKJC3_003297-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:1558886..1560226-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003297-T1 ID=KJC3_003297-T1|Name=KJC3_003297-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1341bp|location=Sequence derived from alignment at ch3:1558886..1560226- (Aspergillus niger KJC3)
CCTCTGTCGGTTACGTCGTTCCATATCGATTCCAGCCATAGGAACATCCC
AGGTGGCTGTTGCTTTTAATCCCCGCGACCATCTGCTAGAGGCTGCTGTC
GAGTTTTGCCTGTTACAAAGCTACGTGGGAGAGGTATCCGCCGCTTTCCG
ACTGCCAGAAATCTGCAGGAGAGCTGTAAGCCCCACCTCGATCATAACCG
TGAAATCGCGGGGTTGGACAGAACATTAAACCTTTCTATTTCACAGACTC
AAGATGGCGTTGCCAAAGAGAATTATAAAGGAGACTGAGCGTCTCATGGC
TGAGCCGTGAGTAGTTCTGCTCTACACAATAATACTATCAAGATAGAGAT
TGTTGACGCATGTCCGCAGAGTTCCTGGCATCAACGCCGTACCTCACGAA
GATAACTTGCGTTACTTCGATGTCTCCATTCACGGACCGGCACAGTCTCC
GTACGAAGGTAAAAAGGGAGCATACACAGGCTGTTTGTATGGCTGTTGAC
TTCTTTCAAGGTGGCATTTTCCGCCTCGAGCTGTTTTTGCCAGAGGACTA
CCCGATGACTCCGCCCAAGATTCGCTTTTTGACTAAGATCTATCATCCCA
ACATCGACCGCCTGGGGCGGATTTGTTTGGACGTCTTGAAGAGTATGCGC
TACTACTGATCTACTTGGGAAAGAAGATACAAGAATCTGGGCTAACGTGT
GACTAGATAACTGGTCTCCCGCTTTGCAAATTCGCACGATCCTTCTCTCT
ATTCAGGCTCTGCTGGGAGCTCCCAACCCGGATGACCCCCTTGCAAATGA
TGTTGCTCAACGCTGGAAGGAGGATGAGCCAGCAGCGATACAGACTGCCA
AGGAATGGACTAGAACCCATGCGATGACTTAGATAAGAAAGGCGGAAAGG
GCTCCACCCGCTAAACAAACTATAAGAGCAGCAATGTTGTGATGTGACCA
TGAGCAAAAGTACTGCGACATTCTGCCTTCCTGGCATTATTTTAGGATAG
GCCTCGATTCTTCGGGACCTTCCCTTCCATACAATGAGAAGGCATCCCTA
ACCATCAACCCTGGTTCGTTTCCCCGCGAGTGCTCATGTATGGTGATAGA
GCTGTGGCTCATTCAGATATGTGGTATAGGCATTTGCTTTCTTTCATCCG
GCTGCGATCTGCTTTTCGATTTCGATGTTAGAGATTCATTCCATAGAATT
GCAATATACCTGTAGCAGATCGTCGACTTTGGCTTTGTTCTTATTGGCCC
AACTGTCCTGGTGAAATAATCAGCCTCTGGCTTGTAGTTCACAGTGATTC
ATGACTATCTATTAAATACAATGGTCTACCCAGTAGCATGC
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Coding sequence (CDS) from alignment at ch3:1558886..1560226-

>KJC3_003297-T1 ID=KJC3_003297-T1|Name=KJC3_003297-T1|organism=Aspergillus niger KJC3|type=CDS|length=1800bp|location=Sequence derived from alignment at ch3:1558886..1560226- (Aspergillus niger KJC3)
ATAACTGGTCTCCCGCTTTGCAAATTCGCACGATCCTTCTCTCTATTCAG
GCTCTGCTGGGAGCTCCCAACCCGGATGACCCCCTTGCAAATGATGTTGC
TCAACGCTGGAAGGAGGATGAGCCAGCAGCGATACAGACTGCCAAGGAAT
GGACTAGAACCCATGCGATGACTTAGGTGGCATTTTCCGCCTCGAGCTGT
TTTTGCCAGAGGACTACCCGATGACTCCGCCCAAGATTCGCTTTTTGACT
AAGATCTATCATCCCAACATCGACCGCCTGGGGCGGATTTGTTTGGACGT
CTTGAAGAAGTTCCTGGCATCAACGCCGTACCTCACGAAGATAACTTGCG
TTACTTCGATGTCTCCATTCACGGACCGGCACAGTCTCCGTACGAAGATG
GCGTTGCCAAAGAGAATTATAAAGGAGACTGAGCGTCTCATGGCTGAGCC
ATAACTGGTCTCCCGCTTTGCAAATTCGCACGATCCTTCTCTCTATTCAG
GCTCTGCTGGGAGCTCCCAACCCGGATGACCCCCTTGCAAATGATGTTGC
TCAACGCTGGAAGGAGGATGAGCCAGCAGCGATACAGACTGCCAAGGAAT
GGACTAGAACCCATGCGATGACTTAGGTGGCATTTTCCGCCTCGAGCTGT
TTTTGCCAGAGGACTACCCGATGACTCCGCCCAAGATTCGCTTTTTGACT
AAGATCTATCATCCCAACATCGACCGCCTGGGGCGGATTTGTTTGGACGT
CTTGAAGAAGTTCCTGGCATCAACGCCGTACCTCACGAAGATAACTTGCG
TTACTTCGATGTCTCCATTCACGGACCGGCACAGTCTCCGTACGAAGATG
GCGTTGCCAAAGAGAATTATAAAGGAGACTGAGCGTCTCATGGCTGAGCC
ATAACTGGTCTCCCGCTTTGCAAATTCGCACGATCCTTCTCTCTATTCAG
GCTCTGCTGGGAGCTCCCAACCCGGATGACCCCCTTGCAAATGATGTTGC
TCAACGCTGGAAGGAGGATGAGCCAGCAGCGATACAGACTGCCAAGGAAT
GGACTAGAACCCATGCGATGACTTAGGTGGCATTTTCCGCCTCGAGCTGT
TTTTGCCAGAGGACTACCCGATGACTCCGCCCAAGATTCGCTTTTTGACT
AAGATCTATCATCCCAACATCGACCGCCTGGGGCGGATTTGTTTGGACGT
CTTGAAGAAGTTCCTGGCATCAACGCCGTACCTCACGAAGATAACTTGCG
TTACTTCGATGTCTCCATTCACGGACCGGCACAGTCTCCGTACGAAGATG
GCGTTGCCAAAGAGAATTATAAAGGAGACTGAGCGTCTCATGGCTGAGCC
ATAACTGGTCTCCCGCTTTGCAAATTCGCACGATCCTTCTCTCTATTCAG
GCTCTGCTGGGAGCTCCCAACCCGGATGACCCCCTTGCAAATGATGTTGC
TCAACGCTGGAAGGAGGATGAGCCAGCAGCGATACAGACTGCCAAGGAAT
GGACTAGAACCCATGCGATGACTTAGGTGGCATTTTCCGCCTCGAGCTGT
TTTTGCCAGAGGACTACCCGATGACTCCGCCCAAGATTCGCTTTTTGACT
AAGATCTATCATCCCAACATCGACCGCCTGGGGCGGATTTGTTTGGACGT
CTTGAAGAAGTTCCTGGCATCAACGCCGTACCTCACGAAGATAACTTGCG
TTACTTCGATGTCTCCATTCACGGACCGGCACAGTCTCCGTACGAAGATG
GCGTTGCCAAAGAGAATTATAAAGGAGACTGAGCGTCTCATGGCTGAGCC
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003297KJC3_003297Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003297-T1KJC3_003297-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003297-T1.cdsKJC3_003297-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003297-T1.utr3p1KJC3_003297-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003297-T1.exon5KJC3_003297-T1.exon5Aspergillus niger KJC3exon
KJC3_003297-T1.exon4KJC3_003297-T1.exon4Aspergillus niger KJC3exon
KJC3_003297-T1.exon3KJC3_003297-T1.exon3Aspergillus niger KJC3exon
KJC3_003297-T1.exon2KJC3_003297-T1.exon2Aspergillus niger KJC3exon
KJC3_003297-T1.exon1KJC3_003297-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003297-T1.utr5p2KJC3_003297-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_003297-T1.utr5p1KJC3_003297-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR023313
DBxrefInterPro:IPR016135
DBxrefInterPro:IPR000608
DBxrefPFAM:PF00179
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:1558886..1560226 -
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