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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1560357..1565337+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003298-T1 ID=KJC3_003298-T1|Name=KJC3_003298-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4981bp|location=Sequence derived from alignment at ch3:1560357..1565337+ (Aspergillus niger KJC3)
GTCTAAAGCCTTTGGTTCGGATATCTACTCTTCCCCAGGCAAGATTCCAA
TTGACATAGTGACTCCTTCTCCTGCTCTTCTTATTATTTAATCTTTTAAT
AGCCCTTCATCATTGGTCTATCGAAGATACGGTACATGCGCCTCTGGAAT
TCCAAGTTCGACCGCCCCCCCGTAACGACCTCCACAATGCGCACAGCCAA
TTCCACAGACCCGTTCCTCCTACTCAATTGATGAAAAGTCCATGACAAAC
GCGGTCGATATGATAGCACCGTGTATGGCCGCAAACAATTCTTCCACCAA
TGTGCTTCCTGTTTCTCTGAGTCCGTTCGAACGATTCTCCAAGGCGTGCA
TAGCAGCCGACAGGTAGCACCGAAACCAAGGAGCTTTTCAGGCCCGGAGC
CGGCGACGCCATCATGGTGGATCAAAGCGAGCCCAGGCCTCTCACTTCGG
CCTTCGAGAGTCCAACATTCGGGGAGGATAGCTCATTCCATGTGGAGCAG
CCTGTTGGGTCTATGTCGATCTCGCCCTGTGGCCGGGATGTGGTTCTAGC
CTCCAAGGAAGGTCTTCACATCATCGATCTGGATTCGCCATACTCGCCGC
CAAGGTATCTACCGCACCACACACCATGGGAGGTTGCAGACGTTCAATGG
TCTCCGTTTGCTGCCCGAGACTATTGGGTCGTTAGCACGTCGAATCAGAA
GGCGTTGGTATGGAACCTGGGCATGAAATCCTCGCCAAGCTCGATTGAGC
ACGTTCTGCACGCCCACACTCGAGCTATAACAGACATCAACTTCTCCGCG
CATCATGCAGATATGCTCGCGACCTGTGCCGTTGATAGCTTTGTCCACTG
CTGGGATCTGCGGACACCCTCCCGTCCCGCCATCTCGTTCTCTGACTGGC
TTGCTGGAGCAACTCAGGTTAAATGGAACCGACAGGACCCCAACGTTATT
GCCAGTTCTCACGACAAATTCTTGCGAATATGGGACAAGCGGATGGGCGC
GTATCCGATCAAGTCTATTGAGGCACACAGCACGAAGATCTATGGGCTGG
ATTGGAACAGAGTACGGCCCGGGGCCCTCGTAACGTGCTCTCTAGACAAG
ACGATCAAATTCTGGGACTACACGGTGGACACAGAGGTACCGGAGAAGGT
GATCAAGACGCCGTTTCCAGTATGGCGAGCAAGAAATACCCCTTTTGGAT
GGGGTGTCTTGGCCATGCCACAAAGAGGAAACAGTGATCTCCACTTATAT
AGTCGGAGGGCCGGGGAGGGCTCTACTTCCAATGATGAACTTCCTCTGGT
ACACAGCTTTCTAGGACACAAAGGCCAGGTGAAAGAGTTTCTCTGGAGAG
CACGCGGAGAAATAGAGGATGGTATCGATAATAGAGAGTTTCAGCTGGTG
TCTTGGGGCACGGATCGTGAACTCCGCCTACACAGAGTCGATCCAGATAT
CATGCAAAGGGTTGGCTTTGAGAAAGGGAAGACTTACGTCTCCAATATGA
GCCTTACGCGCAAGGGCGCACTGTATAGGTCATATCGAGATACGCCTATT
GACGAAGAGGAAGAAGATATGGACTCGTTGTCACCCACTACTCGACAGAG
CTCTACGCCCCAGACGTCTCGTAATCTGGGCATGAATACTATTTCGGTTC
CATACGCTCGCGCGTGGACGCAGAGCGGAGGAAACGCTGAGTCTAGAATT
GGAATGCAGGGTCGGACAAACGTTCGCACGGATACTAATCCTATTTCCTG
GATGCGTGGCGTGAAAATATCCGGTTGGGATATCGAGACATTGGGCGACG
AAATTACCCACGTCGGAGAAAAGTTCACCAAGGTTGCTTTTGAATCGGTC
GATGTCAGACAACGAAAGGCAACAATATCCCTTCATGGACCATGGGGTGA
CGATGGTGACTCTATTTTCATGAAAGTCGATATCAAGTTCCCTGTTGATT
ACCCTCGAGATGCCATGCCAACGTTCAGTGTGCAGAAGACTGCCGCTGTC
ACCGATCAGCTTGCCGATAAGTTAATAGCTGAAGTTCGCACGATTGCAGA
GACGTTCCTTGCTCACAAAAGAGGATGTCTCGAAGGTGTCGTTCGCTACC
TCTTGGGCGAGAGCACCCTGGAAGAAAGCATCGCTTGGATTCTTGGGGAA
ACGGCAGACACTGTCAAGTCTCCCATCAACGGCCAACTAGGGGGTGAGGA
GTCCAGCGATGAAGATGAAGTCGGATTGTCTCAAAGCCAAGATCTAGGCA
TGAGTTCTGAACTGCTTCGACCGGTCAATGCCAATGTCATGGTCCCTGTA
GCCAAGGGATGCGGTGCACTGTGGGCCAACGACGGTCGCTTGGTGTGCTT
CTTCCCCTTCAAGAAGGACAAGTCCAATTGGCTAGAAAACCTAGGATTCA
AGGAAATGACCAGGTTATCTAGAGCGGACAAGGTCTTCGAAGGCTTTGGT
CGTCTGCAGACCAATTCTCCTGGACCTCGGACATCTGTCACAATGGCCAG
CACTGACGATGGGGCTTCTGAATATTCAGACGATTCAGACGCCGAATCGT
CAAGCTCTTCCGGGTCTTCTGGTATTCTGTCAGGGCTCCAGCACCGGTTT
CCAACACCTCAGACATGGCGAAGTGGTGGCAGTCTTGGACTTTATCGTCC
GCGCTCTACAGACAATTCCCAAAGGTCGACCGTTGGTGCGATGACATCGA
AATCATCTGAAGGCTCGCAAAATGTCATCTCCATCCACGACTTCAGTGAT
TTGCTACCAGCCAAGCGGGAACTGGCTAGCAAATATCGTATTTGCGGCAA
AGTCACGGACGTTTGTGCGCATAATTCAGCTGTAGCCCTCGACCACGGTT
ATTACGAGCTGGCTCGAATCTGGGGACTTGTCAGGCTTATTTTGCACAAC
TGCAAAAGCTCAATGTTTTCGTCCGGTTTTGACACCCTGGATAGACCGTA
CATACAAAGGAAGGATAGCGCCGTGGATCTGAGTAACGATATGGGAAGTC
AGGACCAACGCCACAAAGGGTTTCTAAATTCCGTCATACATTGGGGCGAC
CACCCATTCGGTGGTCAGTGGCTGATTCCTGCTCTCTTCGAACATTTCGA
ACAAATCGGTGACGTGCAAATGATCGCTATGCTATCTTGTGTTTTGCACG
AAGCAAACATTGACGAGGCTTCCAAAGAACACGCTGATGTCAGTCGGGCC
GTGTCCAGGCGGATGGAAGAGCATGCAATTTCTTTTGATCTGTATTCCCC
CAACTCGGCTGTGCAGACTAAACCGCAGACGGCCGTGCCGCTTGCCACTA
CACCGAAGGACAGTCACGCAACGCCTATCACACATAGTTCGGGGCGTTCT
TCGTCTGAAATTTGGCGTCCCGATTCCACGCCGCCATATTCCACCGGCAC
AACTCCTCCTCTGGCCAGCCGAGCGGGCCCCCTAGCAGCAGACCGCAAGA
CATGGACCCAGAACATAGCAATCGCTGCTTCGCCTGACCAGCAATCACAA
CCACGCAGTGGCTCCGGGATTGGCTCCGTTCTCGCCTCGTCTCTTTCCCG
CTCTCTTACATTTGGTCCTTCGTCAGCATCTCCTCCAGCAACTGCCTTGT
CACGGAAGGTTTTCAATCCTAATGGCAGTCCCAATACAGTCGGAGGGCCA
GGGGTGTGGGTGACGAGTGCCTTTACTGCGAAACCAGTTTCAGCCATTCC
CGACTATTTGACTACCTCCACCGCGCTCACGTCACAAACTCATTCTGACA
CGGAGAGCGAGAGACCTGCTCCAGCCAAACCGTCGACAAAGGTTCGCGCA
GTCTTGAAGAACCAAGCTGCTTTCGAGGGCAATGGACAGTCGCAGAATAC
TTTCCTCGATCCCAAGAAAGAGTGGCTGTATCGGTCTTATCGCGCAGCAT
ACGCTCATCTGCTATCTATATGGGGACTGCCAGTTCAACGCAGTGAAGTA
CTGAAGATCGGCGGCACCCCCAATCCCACCAAGGAGCCGACACACCGTCG
CCACAGAAGCCACCACGATTCATTCTCTCTTCCCACCTCCAAGCGCAGAA
GCTCGACGGCTGCGCCCACTGATACTGAAAACCAGGGTCTAGAAATCCAA
CGCCACTGCATCAGTTGTGGCCAAGCCCTGCAGCACTCCATCTTCGCGAC
CAAGGCACTCACCGAAGCAATACCCAAGGGCCACTTAAAGGGCATAACAC
CACCTCCCCTCACCTGCCCTCACTGCAAACCAAAACAGCCTCTCCCTCTC
AGACTCCCCTGCGTTATCTGCAGCGAAGTCGTCGAAGGCATGCTCATCCC
CTGCCTCGGCTGCGGTCACGTAAGCTGCTTCGACTGCCATCGAGGCTGGT
TCTCTATGGCATCATCGAACACACCCGACCCCGAACAGGAAGAGTACCAC
TTCTGCCCGAGCGGCTGTGGCTGCAAATGCGCCGACTACATTGACCCTGA
CATCCCCACGAACCCGTGGAGACTTAATCCGACGTCCCCGAGCGCCCACG
GCAGCGAGACCTCTCTCCACCGACACCGCGCCAAACCTTCCGACGGATCC
GGGTCCTCGAAACACGGCAGTGAAGTCGTGGCTAGTGTTGGTCAGCACGA
AGAGGATCTGGATAACTGGCAAGCTGCGTCGCCCTTTGCATCGCTTGCAC
GGGGTCTCGGGGGTGGCTTGAGCCGAGGGCTGCGCGTTAAGGATGAGAGG
AGAAAGTCGAAGCCGACTACGGCGCCGTTTGTTCCTAAGAAGTCCTCGAT
GAATCAGGTGGAGAGTAGATGATGCTTTGCTCTGTTGCTTTGTGTGACTG
ATATTGGCTTTTACCTTATGATGCTTCATGTATACCAATACCCATTGATT
TGTTTGTTCAGCGAGGTTTGTTCACCATATGAAAAGCGATTGTGTTTGAT
ATCATTACCACCACATTCATCATAGAAGCTTTTATTACCAGTATACTGCA
TTTACGTGCGTCATTAATCGTATACGCATGC back to topCoding sequence (CDS) from alignment at ch3:1560357..1565337+ >KJC3_003298-T1 ID=KJC3_003298-T1|Name=KJC3_003298-T1|organism=Aspergillus niger KJC3|type=CDS|length=4359bp|location=Sequence derived from alignment at ch3:1560357..1565337+ (Aspergillus niger KJC3)
ATGGTGGATCAAAGCGAGCCCAGGCCTCTCACTTCGGCCTTCGAGAGTCC
AACATTCGGGGAGGATAGCTCATTCCATGTGGAGCAGCCTGTTGGGTCTA
TGTCGATCTCGCCCTGTGGCCGGGATGTGGTTCTAGCCTCCAAGGAAGGT
CTTCACATCATCGATCTGGATTCGCCATACTCGCCGCCAAGGTATCTACC
GCACCACACACCATGGGAGGTTGCAGACGTTCAATGGTCTCCGTTTGCTG
CCCGAGACTATTGGGTCGTTAGCACGTCGAATCAGAAGGCGTTGGTATGG
AACCTGGGCATGAAATCCTCGCCAAGCTCGATTGAGCACGTTCTGCACGC
CCACACTCGAGCTATAACAGACATCAACTTCTCCGCGCATCATGCAGATA
TGCTCGCGACCTGTGCCGTTGATAGCTTTGTCCACTGCTGGGATCTGCGG
ACACCCTCCCGTCCCGCCATCTCGTTCTCTGACTGGCTTGCTGGAGCAAC
TCAGGTTAAATGGAACCGACAGGACCCCAACGTTATTGCCAGTTCTCACG
ACAAATTCTTGCGAATATGGGACAAGCGGATGGGCGCGTATCCGATCAAG
TCTATTGAGGCACACAGCACGAAGATCTATGGGCTGGATTGGAACAGAGT
ACGGCCCGGGGCCCTCGTAACGTGCTCTCTAGACAAGACGATCAAATTCT
GGGACTACACGGTGGACACAGAGGTACCGGAGAAGGTGATCAAGACGCCG
TTTCCAGTATGGCGAGCAAGAAATACCCCTTTTGGATGGGGTGTCTTGGC
CATGCCACAAAGAGGAAACAGTGATCTCCACTTATATAGTCGGAGGGCCG
GGGAGGGCTCTACTTCCAATGATGAACTTCCTCTGGTACACAGCTTTCTA
GGACACAAAGGCCAGGTGAAAGAGTTTCTCTGGAGAGCACGCGGAGAAAT
AGAGGATGGTATCGATAATAGAGAGTTTCAGCTGGTGTCTTGGGGCACGG
ATCGTGAACTCCGCCTACACAGAGTCGATCCAGATATCATGCAAAGGGTT
GGCTTTGAGAAAGGGAAGACTTACGTCTCCAATATGAGCCTTACGCGCAA
GGGCGCACTGTATAGGTCATATCGAGATACGCCTATTGACGAAGAGGAAG
AAGATATGGACTCGTTGTCACCCACTACTCGACAGAGCTCTACGCCCCAG
ACGTCTCGTAATCTGGGCATGAATACTATTTCGGTTCCATACGCTCGCGC
GTGGACGCAGAGCGGAGGAAACGCTGAGTCTAGAATTGGAATGCAGGGTC
GGACAAACGTTCGCACGGATACTAATCCTATTTCCTGGATGCGTGGCGTG
AAAATATCCGGTTGGGATATCGAGACATTGGGCGACGAAATTACCCACGT
CGGAGAAAAGTTCACCAAGGTTGCTTTTGAATCGGTCGATGTCAGACAAC
GAAAGGCAACAATATCCCTTCATGGACCATGGGGTGACGATGGTGACTCT
ATTTTCATGAAAGTCGATATCAAGTTCCCTGTTGATTACCCTCGAGATGC
CATGCCAACGTTCAGTGTGCAGAAGACTGCCGCTGTCACCGATCAGCTTG
CCGATAAGTTAATAGCTGAAGTTCGCACGATTGCAGAGACGTTCCTTGCT
CACAAAAGAGGATGTCTCGAAGGTGTCGTTCGCTACCTCTTGGGCGAGAG
CACCCTGGAAGAAAGCATCGCTTGGATTCTTGGGGAAACGGCAGACACTG
TCAAGTCTCCCATCAACGGCCAACTAGGGGGTGAGGAGTCCAGCGATGAA
GATGAAGTCGGATTGTCTCAAAGCCAAGATCTAGGCATGAGTTCTGAACT
GCTTCGACCGGTCAATGCCAATGTCATGGTCCCTGTAGCCAAGGGATGCG
GTGCACTGTGGGCCAACGACGGTCGCTTGGTGTGCTTCTTCCCCTTCAAG
AAGGACAAGTCCAATTGGCTAGAAAACCTAGGATTCAAGGAAATGACCAG
GTTATCTAGAGCGGACAAGGTCTTCGAAGGCTTTGGTCGTCTGCAGACCA
ATTCTCCTGGACCTCGGACATCTGTCACAATGGCCAGCACTGACGATGGG
GCTTCTGAATATTCAGACGATTCAGACGCCGAATCGTCAAGCTCTTCCGG
GTCTTCTGGTATTCTGTCAGGGCTCCAGCACCGGTTTCCAACACCTCAGA
CATGGCGAAGTGGTGGCAGTCTTGGACTTTATCGTCCGCGCTCTACAGAC
AATTCCCAAAGGTCGACCGTTGGTGCGATGACATCGAAATCATCTGAAGG
CTCGCAAAATGTCATCTCCATCCACGACTTCAGTGATTTGCTACCAGCCA
AGCGGGAACTGGCTAGCAAATATCGTATTTGCGGCAAAGTCACGGACGTT
TGTGCGCATAATTCAGCTGTAGCCCTCGACCACGGTTATTACGAGCTGGC
TCGAATCTGGGGACTTGTCAGGCTTATTTTGCACAACTGCAAAAGCTCAA
TGTTTTCGTCCGGTTTTGACACCCTGGATAGACCGTACATACAAAGGAAG
GATAGCGCCGTGGATCTGAGTAACGATATGGGAAGTCAGGACCAACGCCA
CAAAGGGTTTCTAAATTCCGTCATACATTGGGGCGACCACCCATTCGGTG
GTCAGTGGCTGATTCCTGCTCTCTTCGAACATTTCGAACAAATCGGTGAC
GTGCAAATGATCGCTATGCTATCTTGTGTTTTGCACGAAGCAAACATTGA
CGAGGCTTCCAAAGAACACGCTGATGTCAGTCGGGCCGTGTCCAGGCGGA
TGGAAGAGCATGCAATTTCTTTTGATCTGTATTCCCCCAACTCGGCTGTG
CAGACTAAACCGCAGACGGCCGTGCCGCTTGCCACTACACCGAAGGACAG
TCACGCAACGCCTATCACACATAGTTCGGGGCGTTCTTCGTCTGAAATTT
GGCGTCCCGATTCCACGCCGCCATATTCCACCGGCACAACTCCTCCTCTG
GCCAGCCGAGCGGGCCCCCTAGCAGCAGACCGCAAGACATGGACCCAGAA
CATAGCAATCGCTGCTTCGCCTGACCAGCAATCACAACCACGCAGTGGCT
CCGGGATTGGCTCCGTTCTCGCCTCGTCTCTTTCCCGCTCTCTTACATTT
GGTCCTTCGTCAGCATCTCCTCCAGCAACTGCCTTGTCACGGAAGGTTTT
CAATCCTAATGGCAGTCCCAATACAGTCGGAGGGCCAGGGGTGTGGGTGA
CGAGTGCCTTTACTGCGAAACCAGTTTCAGCCATTCCCGACTATTTGACT
ACCTCCACCGCGCTCACGTCACAAACTCATTCTGACACGGAGAGCGAGAG
ACCTGCTCCAGCCAAACCGTCGACAAAGGTTCGCGCAGTCTTGAAGAACC
AAGCTGCTTTCGAGGGCAATGGACAGTCGCAGAATACTTTCCTCGATCCC
AAGAAAGAGTGGCTGTATCGGTCTTATCGCGCAGCATACGCTCATCTGCT
ATCTATATGGGGACTGCCAGTTCAACGCAGTGAAGTACTGAAGATCGGCG
GCACCCCCAATCCCACCAAGGAGCCGACACACCGTCGCCACAGAAGCCAC
CACGATTCATTCTCTCTTCCCACCTCCAAGCGCAGAAGCTCGACGGCTGC
GCCCACTGATACTGAAAACCAGGGTCTAGAAATCCAACGCCACTGCATCA
GTTGTGGCCAAGCCCTGCAGCACTCCATCTTCGCGACCAAGGCACTCACC
GAAGCAATACCCAAGGGCCACTTAAAGGGCATAACACCACCTCCCCTCAC
CTGCCCTCACTGCAAACCAAAACAGCCTCTCCCTCTCAGACTCCCCTGCG
TTATCTGCAGCGAAGTCGTCGAAGGCATGCTCATCCCCTGCCTCGGCTGC
GGTCACGTAAGCTGCTTCGACTGCCATCGAGGCTGGTTCTCTATGGCATC
ATCGAACACACCCGACCCCGAACAGGAAGAGTACCACTTCTGCCCGAGCG
GCTGTGGCTGCAAATGCGCCGACTACATTGACCCTGACATCCCCACGAAC
CCGTGGAGACTTAATCCGACGTCCCCGAGCGCCCACGGCAGCGAGACCTC
TCTCCACCGACACCGCGCCAAACCTTCCGACGGATCCGGGTCCTCGAAAC
ACGGCAGTGAAGTCGTGGCTAGTGTTGGTCAGCACGAAGAGGATCTGGAT
AACTGGCAAGCTGCGTCGCCCTTTGCATCGCTTGCACGGGGTCTCGGGGG
TGGCTTGAGCCGAGGGCTGCGCGTTAAGGATGAGAGGAGAAAGTCGAAGC
CGACTACGGCGCCGTTTGTTCCTAAGAAGTCCTCGATGAATCAGGTGGAG
AGTAGATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003298-T1.utr5p1 | KJC3_003298-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003298-T1.utr3p1 | KJC3_003298-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR001841 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR001680 |
| DBxref | PFAM:PF17120 |
| DBxref | PFAM:PF00400 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1560357..1565337 + |
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