|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1642766..1643711+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003329-T1 ID=KJC3_003329-T1|Name=KJC3_003329-T1|organism=Aspergillus niger KJC3|type=mRNA|length=946bp|location=Sequence derived from alignment at ch3:1642766..1643711+ (Aspergillus niger KJC3)
ATGAACTGCTTCCGTGGCAGTATATTCTCGCCCAACAGCAATCTCCGTCG
GACTGTCCTAGGTACTTCTCTGCAGATGATGCAACAGTAAGTCTCAACCT
TGCCACACACACACACACACACACACACACACAGAAAGGGAAAGAAATAC
TGACCGTCCTCTAGGTGGACCGGTGTCAACTTTGTCTTCTACTTTGGAAC
GACCTTTTTCCAGTCGGTGAGTAAGCTCGATCTGTGCTTGAGATGATGCG
CTGACGGAGTTATAGCTGGGAACCATCGATGACCCCTTCCTCATCAGCAT
GATTACCACTATCGTCAACGTCTGCTCGACCCCCGTCTCGTTCTACACAA
TTGAGAAGTTTGGCCGCCGTTCGCTCCTTTTGTGGGGAGCACTTGGTATG
GTCATCTGCCAGTTCATTGTCGCTATCGTCGGCACCGTGGACGGTAGCAA
TAAGCACGCTGTCAGTGCAGAGATTTCTTTCATCTGCATTTACATCTTCT
TCTTTGCTAGCACGTGGGGCCCGGGCGCCTGGGTTGTGATTGGCGAGATT
TTCCCCCTACCTATTCGGTCGCGTGGTGTGGCTCTGTCGACGGCATCGAA
CTGGCTGTGGAATTGCGTAAGTAGATTGCTCCCCTATTGATGAAACATGC
TGACCGGTCAGATCATCGCTGTCATCACCCCTTACATGGTCGACAAGGAC
AAGGGTGACTTGAAGGCCAAGGTGTTCTTCATCTGGGGCTCGCTGTGTGC
CTGCGCTTTTGTCTACACGTACTTCCTAATTCCGGAGACCAAGGGTCTTA
CTCTTGAGCAGGTGGACAAGATGATGGAAGAGACCACGCCTCGCACCTCA
GCCAAGTGGACTCCACATGGCACCTTCACGGCCGAGATGGGTCTTACTGC
GAATGCCGTGGCCGAAAAGGCTACTGCGGTTCACCAGGAGGTGTGA back to topCoding sequence (CDS) from alignment at ch3:1642766..1643711+ >KJC3_003329-T1 ID=KJC3_003329-T1|Name=KJC3_003329-T1|organism=Aspergillus niger KJC3|type=CDS|length=3096bp|location=Sequence derived from alignment at ch3:1642766..1643711+ (Aspergillus niger KJC3)
ATGAACTGCTTCCGTGGCAGTATATTCTCGCCCAACAGCAATCTCCGTCG
GACTGTCCTAGGTACTTCTCTGCAGATGATGCAACAGTGGACCGGTGTCA
ACTTTGTCTTCTACTTTGGAACGACCTTTTTCCAGTCGCTGGGAACCATC
GATGACCCCTTCCTCATCAGCATGATTACCACTATCGTCAACGTCTGCTC
GACCCCCGTCTCGTTCTACACAATTGAGAAGTTTGGCCGCCGTTCGCTCC
TTTTGTGGGGAGCACTTGGTATGGTCATCTGCCAGTTCATTGTCGCTATC
GTCGGCACCGTGGACGGTAGCAATAAGCACGCTGTCAGTGCAGAGATTTC
TTTCATCTGCATTTACATCTTCTTCTTTGCTAGCACGTGGGGCCCGGGCG
CCTGGGTTGTGATTGGCGAGATTTTCCCCCTACCTATTCGGTCGCGTGGT
GTGGCTCTGTCGACGGCATCGAACTGGCTGTGGAATTGCATCATCGCTGT
CATCACCCCTTACATGGTCGACAAGGACAAGGGTGACTTGAAGGCCAAGG
TGTTCTTCATCTGGGGCTCGCTGTGTGCCTGCGCTTTTGTCTACACGTAC
TTCCTAATTCCGGAGACCAAGGGTCTTACTCTTGAGCAGGTGGACAAGAT
GATGGAAGAGACCACGCCTCGCACCTCAGCCAAGTGGACTCCACATGGCA
CCTTCACGGCCGAGATGGGTCTTACTGCGAATGCCGTGGCCGAAAAGGCT
ACTGCGGTTCACCAGGAGGTGTGAATGAACTGCTTCCGTGGCAGTATATT
CTCGCCCAACAGCAATCTCCGTCGGACTGTCCTAGGTACTTCTCTGCAGA
TGATGCAACAGTGGACCGGTGTCAACTTTGTCTTCTACTTTGGAACGACC
TTTTTCCAGTCGCTGGGAACCATCGATGACCCCTTCCTCATCAGCATGAT
TACCACTATCGTCAACGTCTGCTCGACCCCCGTCTCGTTCTACACAATTG
AGAAGTTTGGCCGCCGTTCGCTCCTTTTGTGGGGAGCACTTGGTATGGTC
ATCTGCCAGTTCATTGTCGCTATCGTCGGCACCGTGGACGGTAGCAATAA
GCACGCTGTCAGTGCAGAGATTTCTTTCATCTGCATTTACATCTTCTTCT
TTGCTAGCACGTGGGGCCCGGGCGCCTGGGTTGTGATTGGCGAGATTTTC
CCCCTACCTATTCGGTCGCGTGGTGTGGCTCTGTCGACGGCATCGAACTG
GCTGTGGAATTGCATCATCGCTGTCATCACCCCTTACATGGTCGACAAGG
ACAAGGGTGACTTGAAGGCCAAGGTGTTCTTCATCTGGGGCTCGCTGTGT
GCCTGCGCTTTTGTCTACACGTACTTCCTAATTCCGGAGACCAAGGGTCT
TACTCTTGAGCAGGTGGACAAGATGATGGAAGAGACCACGCCTCGCACCT
CAGCCAAGTGGACTCCACATGGCACCTTCACGGCCGAGATGGGTCTTACT
GCGAATGCCGTGGCCGAAAAGGCTACTGCGGTTCACCAGGAGGTGTGAAT
GAACTGCTTCCGTGGCAGTATATTCTCGCCCAACAGCAATCTCCGTCGGA
CTGTCCTAGGTACTTCTCTGCAGATGATGCAACAGTGGACCGGTGTCAAC
TTTGTCTTCTACTTTGGAACGACCTTTTTCCAGTCGCTGGGAACCATCGA
TGACCCCTTCCTCATCAGCATGATTACCACTATCGTCAACGTCTGCTCGA
CCCCCGTCTCGTTCTACACAATTGAGAAGTTTGGCCGCCGTTCGCTCCTT
TTGTGGGGAGCACTTGGTATGGTCATCTGCCAGTTCATTGTCGCTATCGT
CGGCACCGTGGACGGTAGCAATAAGCACGCTGTCAGTGCAGAGATTTCTT
TCATCTGCATTTACATCTTCTTCTTTGCTAGCACGTGGGGCCCGGGCGCC
TGGGTTGTGATTGGCGAGATTTTCCCCCTACCTATTCGGTCGCGTGGTGT
GGCTCTGTCGACGGCATCGAACTGGCTGTGGAATTGCATCATCGCTGTCA
TCACCCCTTACATGGTCGACAAGGACAAGGGTGACTTGAAGGCCAAGGTG
TTCTTCATCTGGGGCTCGCTGTGTGCCTGCGCTTTTGTCTACACGTACTT
CCTAATTCCGGAGACCAAGGGTCTTACTCTTGAGCAGGTGGACAAGATGA
TGGAAGAGACCACGCCTCGCACCTCAGCCAAGTGGACTCCACATGGCACC
TTCACGGCCGAGATGGGTCTTACTGCGAATGCCGTGGCCGAAAAGGCTAC
TGCGGTTCACCAGGAGGTGTGAATGAACTGCTTCCGTGGCAGTATATTCT
CGCCCAACAGCAATCTCCGTCGGACTGTCCTAGGTACTTCTCTGCAGATG
ATGCAACAGTGGACCGGTGTCAACTTTGTCTTCTACTTTGGAACGACCTT
TTTCCAGTCGCTGGGAACCATCGATGACCCCTTCCTCATCAGCATGATTA
CCACTATCGTCAACGTCTGCTCGACCCCCGTCTCGTTCTACACAATTGAG
AAGTTTGGCCGCCGTTCGCTCCTTTTGTGGGGAGCACTTGGTATGGTCAT
CTGCCAGTTCATTGTCGCTATCGTCGGCACCGTGGACGGTAGCAATAAGC
ACGCTGTCAGTGCAGAGATTTCTTTCATCTGCATTTACATCTTCTTCTTT
GCTAGCACGTGGGGCCCGGGCGCCTGGGTTGTGATTGGCGAGATTTTCCC
CCTACCTATTCGGTCGCGTGGTGTGGCTCTGTCGACGGCATCGAACTGGC
TGTGGAATTGCATCATCGCTGTCATCACCCCTTACATGGTCGACAAGGAC
AAGGGTGACTTGAAGGCCAAGGTGTTCTTCATCTGGGGCTCGCTGTGTGC
CTGCGCTTTTGTCTACACGTACTTCCTAATTCCGGAGACCAAGGGTCTTA
CTCTTGAGCAGGTGGACAAGATGATGGAAGAGACCACGCCTCGCACCTCA
GCCAAGTGGACTCCACATGGCACCTTCACGGCCGAGATGGGTCTTACTGC
GAATGCCGTGGCCGAAAAGGCTACTGCGGTTCACCAGGAGGTGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR005829 |
| DBxref | InterPro:IPR005828 |
| DBxref | InterPro:IPR003663 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1642766..1643711 + |
|
