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KJC3_003396-T1, KJC3_003396-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003396-T1
Unique NameKJC3_003396-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:1820038..1821404+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003396-T1 ID=KJC3_003396-T1|Name=KJC3_003396-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1367bp|location=Sequence derived from alignment at ch3:1820038..1821404+ (Aspergillus niger KJC3)
CACAAACGGAGGCAACACTTTAGCCTCATAAAATTGCCTCCTCCACATTA
TCGCAACGGTCCCGAAGAATGGTCACTGTAGGTGCATCGTCATATCACAT
TCGGCAGTTGAACCTTAATTCACAACGCGGAGACCGTCGGAGGTTTCTTC
CTCCGGATGACGCGGTGGCTCCCGCAGGTACATCAATTCGGTCCGATCGG
CGGCAAAGACACTTGGCAGACTGACTGAACTTGCCAGTTCCCCGGAGATA
TTCTATTTTCATATCAAGTTGGTAAGACAACAGGCGGTGAGATATGGGAC
GGCAACGATCTAAACGGGCATCCAGCTCCGATATGCCAGGTACGTGTAGC
ACCTCCACGTCTGCAAATCTGCCGTTTAATGACTGACCCAATCCTAGAGG
ATGATGATGTTCTAAGTCCTATCTCCTGCGAGGTATGCAGGCAGCGGAAA
TGCAAGGTGAGTTAAACTTTCGTTCATCTACTATTTCTGCAGCGTTAATA
CCCACATAGTGCGATCGGAGACTGTATGGCGAACCTATGAAAATGATATT
CCACCTTAAGCGTCGGACTTTGTTGGTCTCTGACATACACCTGTAGCCCT
TTTTGCTCTCAATGCTCCAATGAATCATCAAAATGCAAATACCCTGAAAG
CGGCAAGAGGTATGACCATCTCTCTGCGAGAGACCCGCACTCCACAGCTA
ACCAATATTCAATAGAGGTCTACCTCTCGGATATCTCAATCAATTAGAGC
AAAGACTTGCAGAAACCGAGTCGGCCCTTTATGGTGCTCTCATGGCATTG
AGCTCGATGGGACCAGCAACCACTCTGCTCCAAGCCACTACGAAGCCGGA
TTCGTTACAAAAATCGAAAGCTGCACGAATGGAGGAATGGTCGCGATTGC
CGCTTCGAGATTGGCCTGACATATACCACTGGAAGGCGTCCATGAGCGAT
CAATTTACCCTCAACCAGTTGCAAGGGGAACCGCTCGTGGAAAGTTCTGC
AGTTAGTCATGCCGTTTCAGCTTCGCCTGTGGCAACTACTGCCCACAGCC
ACAGCCCTCAAGGTGAAATAGAAGCCCCGGTACCGGCTAGTTTTGCTTGG
CACCCAGGAGAAGGTGTCCACATGAATAGTCCTTATAACGTCTACCTCCA
ACCCCCTGGAATGGTGTCTTCTCCGGTATACCCAAGAGACCCAGCTTCCG
GGTCAACTGGGGCTATAATTAATCCTTTTCCCGATTATAGTAACGCCACG
GCGACGGGGGATAGTGGGAAACAAAATGATCACTCCACGATGGCGGACGA
GCTGTCTAAAAGCAAGCCGAGTATATACTTTTGATAACGAAGAAATGAAA
TTCAAGACTGTGTGGGG
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Coding sequence (CDS) from alignment at ch3:1820038..1821404+

>KJC3_003396-T1 ID=KJC3_003396-T1|Name=KJC3_003396-T1|organism=Aspergillus niger KJC3|type=CDS|length=3096bp|location=Sequence derived from alignment at ch3:1820038..1821404+ (Aspergillus niger KJC3)
ATGACTGACCCAATCCTAGAGGATGATGATGTTCTAAGTCCTATCTCCTG
CGAGGTATGCAGGCAGCGGAAATGCAAGTGCGATCGGAGACTCCCTTTTT
GCTCTCAATGCTCCAATGAATCATCAAAATGCAAATACCCTGAAAGCGGC
AAGAGAGGTCTACCTCTCGGATATCTCAATCAATTAGAGCAAAGACTTGC
AGAAACCGAGTCGGCCCTTTATGGTGCTCTCATGGCATTGAGCTCGATGG
GACCAGCAACCACTCTGCTCCAAGCCACTACGAAGCCGGATTCGTTACAA
AAATCGAAAGCTGCACGAATGGAGGAATGGTCGCGATTGCCGCTTCGAGA
TTGGCCTGACATATACCACTGGAAGGCGTCCATGAGCGATCAATTTACCC
TCAACCAGTTGCAAGGGGAACCGCTCGTGGAAAGTTCTGCAGTTAGTCAT
GCCGTTTCAGCTTCGCCTGTGGCAACTACTGCCCACAGCCACAGCCCTCA
AGGTGAAATAGAAGCCCCGGTACCGGCTAGTTTTGCTTGGCACCCAGGAG
AAGGTGTCCACATGAATAGTCCTTATAACGTCTACCTCCAACCCCCTGGA
ATGGTGTCTTCTCCGGTATACCCAAGAGACCCAGCTTCCGGGTCAACTGG
GGCTATAATTAATCCTTTTCCCGATTATAGTAACGCCACGGCGACGGGGG
ATAGTGGGAAACAAAATGATCACTCCACGATGGCGGACGAGCTGTCTAAA
AGCAAGCCGAGTATATACTTTTGAATGACTGACCCAATCCTAGAGGATGA
TGATGTTCTAAGTCCTATCTCCTGCGAGGTATGCAGGCAGCGGAAATGCA
AGTGCGATCGGAGACTCCCTTTTTGCTCTCAATGCTCCAATGAATCATCA
AAATGCAAATACCCTGAAAGCGGCAAGAGAGGTCTACCTCTCGGATATCT
CAATCAATTAGAGCAAAGACTTGCAGAAACCGAGTCGGCCCTTTATGGTG
CTCTCATGGCATTGAGCTCGATGGGACCAGCAACCACTCTGCTCCAAGCC
ACTACGAAGCCGGATTCGTTACAAAAATCGAAAGCTGCACGAATGGAGGA
ATGGTCGCGATTGCCGCTTCGAGATTGGCCTGACATATACCACTGGAAGG
CGTCCATGAGCGATCAATTTACCCTCAACCAGTTGCAAGGGGAACCGCTC
GTGGAAAGTTCTGCAGTTAGTCATGCCGTTTCAGCTTCGCCTGTGGCAAC
TACTGCCCACAGCCACAGCCCTCAAGGTGAAATAGAAGCCCCGGTACCGG
CTAGTTTTGCTTGGCACCCAGGAGAAGGTGTCCACATGAATAGTCCTTAT
AACGTCTACCTCCAACCCCCTGGAATGGTGTCTTCTCCGGTATACCCAAG
AGACCCAGCTTCCGGGTCAACTGGGGCTATAATTAATCCTTTTCCCGATT
ATAGTAACGCCACGGCGACGGGGGATAGTGGGAAACAAAATGATCACTCC
ACGATGGCGGACGAGCTGTCTAAAAGCAAGCCGAGTATATACTTTTGAAT
GACTGACCCAATCCTAGAGGATGATGATGTTCTAAGTCCTATCTCCTGCG
AGGTATGCAGGCAGCGGAAATGCAAGTGCGATCGGAGACTCCCTTTTTGC
TCTCAATGCTCCAATGAATCATCAAAATGCAAATACCCTGAAAGCGGCAA
GAGAGGTCTACCTCTCGGATATCTCAATCAATTAGAGCAAAGACTTGCAG
AAACCGAGTCGGCCCTTTATGGTGCTCTCATGGCATTGAGCTCGATGGGA
CCAGCAACCACTCTGCTCCAAGCCACTACGAAGCCGGATTCGTTACAAAA
ATCGAAAGCTGCACGAATGGAGGAATGGTCGCGATTGCCGCTTCGAGATT
GGCCTGACATATACCACTGGAAGGCGTCCATGAGCGATCAATTTACCCTC
AACCAGTTGCAAGGGGAACCGCTCGTGGAAAGTTCTGCAGTTAGTCATGC
CGTTTCAGCTTCGCCTGTGGCAACTACTGCCCACAGCCACAGCCCTCAAG
GTGAAATAGAAGCCCCGGTACCGGCTAGTTTTGCTTGGCACCCAGGAGAA
GGTGTCCACATGAATAGTCCTTATAACGTCTACCTCCAACCCCCTGGAAT
GGTGTCTTCTCCGGTATACCCAAGAGACCCAGCTTCCGGGTCAACTGGGG
CTATAATTAATCCTTTTCCCGATTATAGTAACGCCACGGCGACGGGGGAT
AGTGGGAAACAAAATGATCACTCCACGATGGCGGACGAGCTGTCTAAAAG
CAAGCCGAGTATATACTTTTGAATGACTGACCCAATCCTAGAGGATGATG
ATGTTCTAAGTCCTATCTCCTGCGAGGTATGCAGGCAGCGGAAATGCAAG
TGCGATCGGAGACTCCCTTTTTGCTCTCAATGCTCCAATGAATCATCAAA
ATGCAAATACCCTGAAAGCGGCAAGAGAGGTCTACCTCTCGGATATCTCA
ATCAATTAGAGCAAAGACTTGCAGAAACCGAGTCGGCCCTTTATGGTGCT
CTCATGGCATTGAGCTCGATGGGACCAGCAACCACTCTGCTCCAAGCCAC
TACGAAGCCGGATTCGTTACAAAAATCGAAAGCTGCACGAATGGAGGAAT
GGTCGCGATTGCCGCTTCGAGATTGGCCTGACATATACCACTGGAAGGCG
TCCATGAGCGATCAATTTACCCTCAACCAGTTGCAAGGGGAACCGCTCGT
GGAAAGTTCTGCAGTTAGTCATGCCGTTTCAGCTTCGCCTGTGGCAACTA
CTGCCCACAGCCACAGCCCTCAAGGTGAAATAGAAGCCCCGGTACCGGCT
AGTTTTGCTTGGCACCCAGGAGAAGGTGTCCACATGAATAGTCCTTATAA
CGTCTACCTCCAACCCCCTGGAATGGTGTCTTCTCCGGTATACCCAAGAG
ACCCAGCTTCCGGGTCAACTGGGGCTATAATTAATCCTTTTCCCGATTAT
AGTAACGCCACGGCGACGGGGGATAGTGGGAAACAAAATGATCACTCCAC
GATGGCGGACGAGCTGTCTAAAAGCAAGCCGAGTATATACTTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003396KJC3_003396Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003396-T1KJC3_003396-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003396-T1.utr5p1KJC3_003396-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003396-T1.exon1KJC3_003396-T1.exon1Aspergillus niger KJC3exon
KJC3_003396-T1.exon2KJC3_003396-T1.exon2Aspergillus niger KJC3exon
KJC3_003396-T1.exon3KJC3_003396-T1.exon3Aspergillus niger KJC3exon
KJC3_003396-T1.exon4KJC3_003396-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003396-T1.cdsKJC3_003396-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003396-T1.utr3p1KJC3_003396-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:1820038..1821404 +
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