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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:1820038..1821404+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003396-T2 ID=KJC3_003396-T2|Name=KJC3_003396-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1367bp|location=Sequence derived from alignment at ch3:1820038..1821404+ (Aspergillus niger KJC3)
CACAAACGGAGGCAACACTTTAGCCTCATAAAATTGCCTCCTCCACATTA
TCGCAACGGTCCCGAAGAATGGTCACTGTAGGTGCATCGTCATATCACAT
TCGGCAGTTGAACCTTAATTCACAACGCGGAGACCGTCGGAGGTTTCTTC
CTCCGGATGACGCGGTGGCTCCCGCAGGTACATCAATTCGGTCCGATCGG
CGGCAAAGACACTTGGCAGACTGACTGAACTTGCCAGTTCCCCGGAGATA
TTCTATTTTCATATCAAGTTGGTAAGACAACAGGCGGTGAGATATGGGAC
GGCAACGATCTAAACGGGCATCCAGCTCCGATATGCCAGGTACGTGTAGC
ACCTCCACGTCTGCAAATCTGCCGTTTAATGACTGACCCAATCCTAGAGG
ATGATGATGTTCTAAGTCCTATCTCCTGCGAGGTATGCAGGCAGCGGAAA
TGCAAGGTGAGTTAAACTTTCGTTCATCTACTATTTCTGCAGCGTTAATA
CCCACATAGTGCGATCGGAGACTGTATGGCGAACCTATGAAAATGATATT
CCACCTTAAGCGTCGGACTTTGTTGGTCTCTGACATACACCTGTAGCCCT
TTTTGCTCTCAATGCTCCAATGAATCATCAAAATGCAAATACCCTGAAAG
CGGCAAGAGGTATGACCATCTCTCTGCGAGAGACCCGCACTCCACAGCTA
ACCAATATTCAATAGAGGTCTACCTCTCGGATATCTCAATCAATTAGAGC
AAAGACTTGCAGAAACCGAGTCGGCCCTTTATGGTGCTCTCATGGCATTG
AGCTCGATGGGACCAGCAACCACTCTGCTCCAAGCCACTACGAAGCCGGA
TTCGTTACAAAAATCGAAAGCTGCACGAATGGAGGAATGGTCGCGATTGC
CGCTTCGAGATTGGCCTGACATATACCACTGGAAGGCGTCCATGAGCGAT
CAATTTACCCTCAACCAGTTGCAAGGGGAACCGCTCGTGGAAAGTTCTGC
AGTTAGTCATGCCGTTTCAGCTTCGCCTGTGGCAACTACTGCCCACAGCC
ACAGCCCTCAAGGTGAAATAGAAGCCCCGGTACCGGCTAGTTTTGCTTGG
CACCCAGGAGAAGGTGTCCACATGAATAGTCCTTATAACGTCTACCTCCA
ACCCCCTGGAATGGTGTCTTCTCCGGTATACCCAAGAGACCCAGCTTCCG
GGTCAACTGGGGCTATAATTAATCCTTTTCCCGATTATAGTAACGCCACG
GCGACGGGGGATAGTGGGAAACAAAATGATCACTCCACGATGGCGGACGA
GCTGTCTAAAAGCAAGCCGAGTATATACTTTTGATAACGAAGAAATGAAA
TTCAAGACTGTGTGGGG back to topCoding sequence (CDS) from alignment at ch3:1820038..1821404+ >KJC3_003396-T2 ID=KJC3_003396-T2|Name=KJC3_003396-T2|organism=Aspergillus niger KJC3|type=CDS|length=543bp|location=Sequence derived from alignment at ch3:1820038..1821404+ (Aspergillus niger KJC3)
ATGGCATTGAGCTCGATGGGACCAGCAACCACTCTGCTCCAAGCCACTAC
GAAGCCGGATTCGTTACAAAAATCGAAAGCTGCACGAATGGAGGAATGGT
CGCGATTGCCGCTTCGAGATTGGCCTGACATATACCACTGGAAGGCGTCC
ATGAGCGATCAATTTACCCTCAACCAGTTGCAAGGGGAACCGCTCGTGGA
AAGTTCTGCAGTTAGTCATGCCGTTTCAGCTTCGCCTGTGGCAACTACTG
CCCACAGCCACAGCCCTCAAGGTGAAATAGAAGCCCCGGTACCGGCTAGT
TTTGCTTGGCACCCAGGAGAAGGTGTCCACATGAATAGTCCTTATAACGT
CTACCTCCAACCCCCTGGAATGGTGTCTTCTCCGGTATACCCAAGAGACC
CAGCTTCCGGGTCAACTGGGGCTATAATTAATCCTTTTCCCGATTATAGT
AACGCCACGGCGACGGGGGATAGTGGGAAACAAAATGATCACTCCACGAT
GGCGGACGAGCTGTCTAAAAGCAAGCCGAGTATATACTTTTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003396-T2.utr3p1 | KJC3_003396-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:1820038..1821404 + |
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