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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2052116..2054107- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003494-T1 ID=KJC3_003494-T1|Name=KJC3_003494-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1992bp|location=Sequence derived from alignment at ch3:2052116..2054107- (Aspergillus niger KJC3)
CAATCGGTGATATAGAAAACAGCGATCTAACCACTTGCACAGTACTAAAC
TAGGCGGTCTACGCCAATGATCTACGCCTGTGACATGTCGCATGGGTTGA
GGCTGAAGGCAGCACGTGAAAACGTAGCCAGCCAATGAACAACCTGAAGA
TCGGAAATCCCAATCGTTCTTCAACTCCTTGCATCGACCCAGCTTCTTGT
CCTTCCTAGCCGTAGGTACACCAGACATTCTATCCCAAAGATGGGCGGCA
TCCCCTTCACATCGCGCGCCTGTGCAGCCTGTAAGAAGCGCAAGATCAAG
GTCAGTCCAGAAGTTTTCCCAATCGTACCATTAATCGGTGACTAAACCCG
GCAGTGTGACCTAGAAAAGCCCGAATGCTCTAGTTGCGTCAAAAGAGGGG
GAACGCCTTGCCCCGGTTATCACGATCGGGACTTCATCCACCACAAGTTT
GAGCCCCGGCGTGTGCGCAATGCAGAGACCAAGCGACCTGGACCCCAGCG
GGTCAGACAGCTCGAGTCCCTGGCTTTGCCTGCTTGCTTCAATATGAGTG
CCGAGGCTCGCACCCAGTTGTTTGCGACCTACATGCACACGTTCTTCGCC
TCCAATCCTTCCCTCAATGGCAGGGTCGATAGCTGGTATCTGTTGATGGC
GCGCTTTCCAACCTTGACCGGCAAATCAGACCTGCTGGATCGATCGGTCA
TTGGCTTGGTCTCCGTGTATCTGGGGAAGAAAACCAGGGATGGTCGATTG
GCACATCATGGATTTGAGATCTACAATAGTGCTCTCCATGCGATGCTACA
GATCTTGCAAGGCAATCGCCCACCAACAGCTACCACTCTCTACTCGGCCA
TTGTCTTCCAGACGTACGAGGTGGGTACGATGAAGTTCAAGAGATGCATT
TATCCTGACTGGCCGCAGACTATGGGACATAGTGAGACGCTATGGCGTAA
CTGTCTTACCCACATACAGGGAGCCACGGCAATGTTGAAACAACACGACT
ATACCCGAGGTGATCAAGCCCTCATCGACGCGATCCTCCGGAGGCACAAG
TGGGCGACGGTCAGTCTAGGTCGAATTTGATGAAAGCCTTACTGACACTT
ATCTAGGCAATGTTCACCCTCAACACTCCTTACAGCATGCAAGTGGACGA
GGAATGCCTCAATCTCGGACGCAAAGAGAGCCCCGTCGACGAGTTATTCG
GAATAATCGCCGAAGCCATAGCTCTACGCAGAGATCTATGTAAACTCATA
GGAAAGCCGCATGACTATCGGGAACACGCATGCCACGCACTATTGCAGCG
CTGCTTTAACCTTGAGGCACGTGTGCACGTAGACTGGCTGCACATGTCCG
CTCACAGGCTGGACGGTATACCTACTCCCTGTAGCAGGCGGAACCTGGGC
CAGGAACCCAGCATGCTCCCCCTGGACCCAAATCTCGCACCGTACAATTT
CGAAAGCCTCGAGGCAGCCAAGATCTACCTCCTGTTTTGGGTGGCCTCCC
TGGTTATCCGTCGCGTGATCTATCAAACCGAGACGCACCTGATGCGAGGC
CCTGACCCGAGCCGCATGGTGTTCTATGCCAGGGAGATTTGCCGCTCTGT
AGCATATCTCATGCAGCTCGAGAATCGGATGTCGTCCGGGCAAATCCTCA
TCCTGGGGCTATCCCAGGCATCCAAATGTTATATTGACTGCGGCGATAAG
GCTGAGTTCGAGTGGTGCCAGGCAATCTACCCGTTCATTGCCGCGAGCGG
CTTTGGTATCGCCAGTCTTATGAGCCAGATGGAGTGGAAGTTCTGGAATG
CGGCTCAGAGCCAGCCAAGAGGATCTCTCTTGTTATTACCTGAGGCGGTA
CATGTTAGTTCGATATAAGCGCACACAGGCGATAGTAACCCGACATGACC
CCCATGCACCGCTGCAGACATGAGAAAACATATACTAATATACTTATACT
AATTGAACTGGTGCACTTTGATTATACTAGACAGGCCAGGCC back to topCoding sequence (CDS) from alignment at ch3:2052116..2054107- >KJC3_003494-T1 ID=KJC3_003494-T1|Name=KJC3_003494-T1|organism=Aspergillus niger KJC3|type=CDS|length=5916bp|location=Sequence derived from alignment at ch3:2052116..2054107- (Aspergillus niger KJC3)
GCAATGTTCACCCTCAACACTCCTTACAGCATGCAAGTGGACGAGGAATG
CCTCAATCTCGGACGCAAAGAGAGCCCCGTCGACGAGTTATTCGGAATAA
TCGCCGAAGCCATAGCTCTACGCAGAGATCTATGTAAACTCATAGGAAAG
CCGCATGACTATCGGGAACACGCATGCCACGCACTATTGCAGCGCTGCTT
TAACCTTGAGGCACGTGTGCACGTAGACTGGCTGCACATGTCCGCTCACA
GGCTGGACGGTATACCTACTCCCTGTAGCAGGCGGAACCTGGGCCAGGAA
CCCAGCATGCTCCCCCTGGACCCAAATCTCGCACCGTACAATTTCGAAAG
CCTCGAGGCAGCCAAGATCTACCTCCTGTTTTGGGTGGCCTCCCTGGTTA
TCCGTCGCGTGATCTATCAAACCGAGACGCACCTGATGCGAGGCCCTGAC
CCGAGCCGCATGGTGTTCTATGCCAGGGAGATTTGCCGCTCTGTAGCATA
TCTCATGCAGCTCGAGAATCGGATGTCGTCCGGGCAAATCCTCATCCTGG
GGCTATCCCAGGCATCCAAATGTTATATTGACTGCGGCGATAAGGCTGAG
TTCGAGTGGTGCCAGGCAATCTACCCGTTCATTGCCGCGAGCGGCTTTGG
TATCGCCAGTCTTATGAGCCAGATGGAGTGGAAGTTCTGGAATGCGGCTC
AGAGCCAGCCAAGAGGATCTCTCTTGTTATTACCTGAGGCGGTACATGTT
AGTTCGATATAAACTATGGGACATAGTGAGACGCTATGGCGTAACTGTCT
TACCCACATACAGGGAGCCACGGCAATGTTGAAACAACACGACTATACCC
GAGGTGATCAAGCCCTCATCGACGCGATCCTCCGGAGGCACAAGTGGGCG
ACGTGTGACCTAGAAAAGCCCGAATGCTCTAGTTGCGTCAAAAGAGGGGG
AACGCCTTGCCCCGGTTATCACGATCGGGACTTCATCCACCACAAGTTTG
AGCCCCGGCGTGTGCGCAATGCAGAGACCAAGCGACCTGGACCCCAGCGG
GTCAGACAGCTCGAGTCCCTGGCTTTGCCTGCTTGCTTCAATATGAGTGC
CGAGGCTCGCACCCAGTTGTTTGCGACCTACATGCACACGTTCTTCGCCT
CCAATCCTTCCCTCAATGGCAGGGTCGATAGCTGGTATCTGTTGATGGCG
CGCTTTCCAACCTTGACCGGCAAATCAGACCTGCTGGATCGATCGGTCAT
TGGCTTGGTCTCCGTGTATCTGGGGAAGAAAACCAGGGATGGTCGATTGG
CACATCATGGATTTGAGATCTACAATAGTGCTCTCCATGCGATGCTACAG
ATCTTGCAAGGCAATCGCCCACCAACAGCTACCACTCTCTACTCGGCCAT
TGTCTTCCAGACGTACGAGATGGGCGGCATCCCCTTCACATCGCGCGCCT
GTGCAGCCTGTAAGAAGCGCAAGATCAAGGCAATGTTCACCCTCAACACT
CCTTACAGCATGCAAGTGGACGAGGAATGCCTCAATCTCGGACGCAAAGA
GAGCCCCGTCGACGAGTTATTCGGAATAATCGCCGAAGCCATAGCTCTAC
GCAGAGATCTATGTAAACTCATAGGAAAGCCGCATGACTATCGGGAACAC
GCATGCCACGCACTATTGCAGCGCTGCTTTAACCTTGAGGCACGTGTGCA
CGTAGACTGGCTGCACATGTCCGCTCACAGGCTGGACGGTATACCTACTC
CCTGTAGCAGGCGGAACCTGGGCCAGGAACCCAGCATGCTCCCCCTGGAC
CCAAATCTCGCACCGTACAATTTCGAAAGCCTCGAGGCAGCCAAGATCTA
CCTCCTGTTTTGGGTGGCCTCCCTGGTTATCCGTCGCGTGATCTATCAAA
CCGAGACGCACCTGATGCGAGGCCCTGACCCGAGCCGCATGGTGTTCTAT
GCCAGGGAGATTTGCCGCTCTGTAGCATATCTCATGCAGCTCGAGAATCG
GATGTCGTCCGGGCAAATCCTCATCCTGGGGCTATCCCAGGCATCCAAAT
GTTATATTGACTGCGGCGATAAGGCTGAGTTCGAGTGGTGCCAGGCAATC
TACCCGTTCATTGCCGCGAGCGGCTTTGGTATCGCCAGTCTTATGAGCCA
GATGGAGTGGAAGTTCTGGAATGCGGCTCAGAGCCAGCCAAGAGGATCTC
TCTTGTTATTACCTGAGGCGGTACATGTTAGTTCGATATAAACTATGGGA
CATAGTGAGACGCTATGGCGTAACTGTCTTACCCACATACAGGGAGCCAC
GGCAATGTTGAAACAACACGACTATACCCGAGGTGATCAAGCCCTCATCG
ACGCGATCCTCCGGAGGCACAAGTGGGCGACGTGTGACCTAGAAAAGCCC
GAATGCTCTAGTTGCGTCAAAAGAGGGGGAACGCCTTGCCCCGGTTATCA
CGATCGGGACTTCATCCACCACAAGTTTGAGCCCCGGCGTGTGCGCAATG
CAGAGACCAAGCGACCTGGACCCCAGCGGGTCAGACAGCTCGAGTCCCTG
GCTTTGCCTGCTTGCTTCAATATGAGTGCCGAGGCTCGCACCCAGTTGTT
TGCGACCTACATGCACACGTTCTTCGCCTCCAATCCTTCCCTCAATGGCA
GGGTCGATAGCTGGTATCTGTTGATGGCGCGCTTTCCAACCTTGACCGGC
AAATCAGACCTGCTGGATCGATCGGTCATTGGCTTGGTCTCCGTGTATCT
GGGGAAGAAAACCAGGGATGGTCGATTGGCACATCATGGATTTGAGATCT
ACAATAGTGCTCTCCATGCGATGCTACAGATCTTGCAAGGCAATCGCCCA
CCAACAGCTACCACTCTCTACTCGGCCATTGTCTTCCAGACGTACGAGAT
GGGCGGCATCCCCTTCACATCGCGCGCCTGTGCAGCCTGTAAGAAGCGCA
AGATCAAGGCAATGTTCACCCTCAACACTCCTTACAGCATGCAAGTGGAC
GAGGAATGCCTCAATCTCGGACGCAAAGAGAGCCCCGTCGACGAGTTATT
CGGAATAATCGCCGAAGCCATAGCTCTACGCAGAGATCTATGTAAACTCA
TAGGAAAGCCGCATGACTATCGGGAACACGCATGCCACGCACTATTGCAG
CGCTGCTTTAACCTTGAGGCACGTGTGCACGTAGACTGGCTGCACATGTC
CGCTCACAGGCTGGACGGTATACCTACTCCCTGTAGCAGGCGGAACCTGG
GCCAGGAACCCAGCATGCTCCCCCTGGACCCAAATCTCGCACCGTACAAT
TTCGAAAGCCTCGAGGCAGCCAAGATCTACCTCCTGTTTTGGGTGGCCTC
CCTGGTTATCCGTCGCGTGATCTATCAAACCGAGACGCACCTGATGCGAG
GCCCTGACCCGAGCCGCATGGTGTTCTATGCCAGGGAGATTTGCCGCTCT
GTAGCATATCTCATGCAGCTCGAGAATCGGATGTCGTCCGGGCAAATCCT
CATCCTGGGGCTATCCCAGGCATCCAAATGTTATATTGACTGCGGCGATA
AGGCTGAGTTCGAGTGGTGCCAGGCAATCTACCCGTTCATTGCCGCGAGC
GGCTTTGGTATCGCCAGTCTTATGAGCCAGATGGAGTGGAAGTTCTGGAA
TGCGGCTCAGAGCCAGCCAAGAGGATCTCTCTTGTTATTACCTGAGGCGG
TACATGTTAGTTCGATATAAACTATGGGACATAGTGAGACGCTATGGCGT
AACTGTCTTACCCACATACAGGGAGCCACGGCAATGTTGAAACAACACGA
CTATACCCGAGGTGATCAAGCCCTCATCGACGCGATCCTCCGGAGGCACA
AGTGGGCGACGTGTGACCTAGAAAAGCCCGAATGCTCTAGTTGCGTCAAA
AGAGGGGGAACGCCTTGCCCCGGTTATCACGATCGGGACTTCATCCACCA
CAAGTTTGAGCCCCGGCGTGTGCGCAATGCAGAGACCAAGCGACCTGGAC
CCCAGCGGGTCAGACAGCTCGAGTCCCTGGCTTTGCCTGCTTGCTTCAAT
ATGAGTGCCGAGGCTCGCACCCAGTTGTTTGCGACCTACATGCACACGTT
CTTCGCCTCCAATCCTTCCCTCAATGGCAGGGTCGATAGCTGGTATCTGT
TGATGGCGCGCTTTCCAACCTTGACCGGCAAATCAGACCTGCTGGATCGA
TCGGTCATTGGCTTGGTCTCCGTGTATCTGGGGAAGAAAACCAGGGATGG
TCGATTGGCACATCATGGATTTGAGATCTACAATAGTGCTCTCCATGCGA
TGCTACAGATCTTGCAAGGCAATCGCCCACCAACAGCTACCACTCTCTAC
TCGGCCATTGTCTTCCAGACGTACGAGATGGGCGGCATCCCCTTCACATC
GCGCGCCTGTGCAGCCTGTAAGAAGCGCAAGATCAAGGCAATGTTCACCC
TCAACACTCCTTACAGCATGCAAGTGGACGAGGAATGCCTCAATCTCGGA
CGCAAAGAGAGCCCCGTCGACGAGTTATTCGGAATAATCGCCGAAGCCAT
AGCTCTACGCAGAGATCTATGTAAACTCATAGGAAAGCCGCATGACTATC
GGGAACACGCATGCCACGCACTATTGCAGCGCTGCTTTAACCTTGAGGCA
CGTGTGCACGTAGACTGGCTGCACATGTCCGCTCACAGGCTGGACGGTAT
ACCTACTCCCTGTAGCAGGCGGAACCTGGGCCAGGAACCCAGCATGCTCC
CCCTGGACCCAAATCTCGCACCGTACAATTTCGAAAGCCTCGAGGCAGCC
AAGATCTACCTCCTGTTTTGGGTGGCCTCCCTGGTTATCCGTCGCGTGAT
CTATCAAACCGAGACGCACCTGATGCGAGGCCCTGACCCGAGCCGCATGG
TGTTCTATGCCAGGGAGATTTGCCGCTCTGTAGCATATCTCATGCAGCTC
GAGAATCGGATGTCGTCCGGGCAAATCCTCATCCTGGGGCTATCCCAGGC
ATCCAAATGTTATATTGACTGCGGCGATAAGGCTGAGTTCGAGTGGTGCC
AGGCAATCTACCCGTTCATTGCCGCGAGCGGCTTTGGTATCGCCAGTCTT
ATGAGCCAGATGGAGTGGAAGTTCTGGAATGCGGCTCAGAGCCAGCCAAG
AGGATCTCTCTTGTTATTACCTGAGGCGGTACATGTTAGTTCGATATAAA
CTATGGGACATAGTGAGACGCTATGGCGTAACTGTCTTACCCACATACAG
GGAGCCACGGCAATGTTGAAACAACACGACTATACCCGAGGTGATCAAGC
CCTCATCGACGCGATCCTCCGGAGGCACAAGTGGGCGACGTGTGACCTAG
AAAAGCCCGAATGCTCTAGTTGCGTCAAAAGAGGGGGAACGCCTTGCCCC
GGTTATCACGATCGGGACTTCATCCACCACAAGTTTGAGCCCCGGCGTGT
GCGCAATGCAGAGACCAAGCGACCTGGACCCCAGCGGGTCAGACAGCTCG
AGTCCCTGGCTTTGCCTGCTTGCTTCAATATGAGTGCCGAGGCTCGCACC
CAGTTGTTTGCGACCTACATGCACACGTTCTTCGCCTCCAATCCTTCCCT
CAATGGCAGGGTCGATAGCTGGTATCTGTTGATGGCGCGCTTTCCAACCT
TGACCGGCAAATCAGACCTGCTGGATCGATCGGTCATTGGCTTGGTCTCC
GTGTATCTGGGGAAGAAAACCAGGGATGGTCGATTGGCACATCATGGATT
TGAGATCTACAATAGTGCTCTCCATGCGATGCTACAGATCTTGCAAGGCA
ATCGCCCACCAACAGCTACCACTCTCTACTCGGCCATTGTCTTCCAGACG
TACGAGATGGGCGGCATCCCCTTCACATCGCGCGCCTGTGCAGCCTGTAA
GAAGCGCAAGATCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003494-T1.utr3p1 | KJC3_003494-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003494-T1.utr5p1 | KJC3_003494-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2052116..2054107 - |
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