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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2204479..2205609+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003536-T1 ID=KJC3_003536-T1|Name=KJC3_003536-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1131bp|location=Sequence derived from alignment at ch3:2204479..2205609+ (Aspergillus niger KJC3)
CGTCCACCTGCGCCTACCTTTCCCTTTTAAAGAACCCTAACATCCCTTCT
CACTACCCTCAGTTCCACATCTCCAGTCAACCATTGCGCACTAGCCCGCC
TTCACATCACCACAATGGGCCAACAACCATCCGCACCCCGTCCAGGCACG
CAGCTCCAAGTGATCGGCGGGGGCCTCTCCCGCACAGGAACTGCCTCCTT
CAGCGCCGCCCTGGAGATCCTCCTCGACGGGCCCATCTATCACGGGGGCA
CCCAAACCACCATGGGTCCGCCCATCGAGATGAAGTCCTGGATCGAGATC
CTGCGCGTCTGGCTCGCCGGCGACCGCACCACAGCTCTTTCTCTCATGCG
GCGTCGCACCGAGGGCTACGCCGCCATCACAGACTCCCCTGCCTCGCACT
TCGTCCCGGAACTAATCGAGCTGTATCCTGAGGCCAAGGTCATTGTGACC
GTGCGGGACAGAGAAGCATGGGTTAAGAGCATGGCGCAGATCAGCTCGTT
GGCTACGATGTGGTTTTTGAGGGGGGTGTTGTTGCCGTTGCCTGGTATGT
ATTTTACACAGTATTTTTCAACTACGGGAACACGAAAACATGCGATAGAT
CGGAACGTTTTCTGACAAGAGTACCTTGATGTTAAGGAATGCGCCACTTC
GTCACATACATCGAATGTCTCCAAGCACAGTGGGACACTCGCTACGATGG
CTGTCGAGATAATACTTGGATTTATGATCGTCATATTGAGTGGTTGAAGG
AGGTTGTTCCCGCTGATCGTTTGGTTTTCTTTAATGTCAAGGAAGGCTGG
GAGCCGCTTTGTCGCGCGCTGGGGAAGGAGGTTCCTAAGGATATTCCGTT
TCCGAGAGTTAACGACTCCCAGGCAATCAACCGGGTGGCTGAGTATCATA
TCAAGCGTGGGTTGCTGCGTTGGGCGGTGGCTTTTGCTGTTGTGGGTGTG
CTTGGGGGATGGTGGTATTTGGGGTGATGCTTTGTGAGGTTTGTTCTGAA
TGTGAAGTATATGCGCAATAAATGTAGTAGTATGAAATTTTTGATGGAAT
AAAATAGATGGCCGTCGTCGACTTGTTAGCAGCAAACTGCTCGGTGTTGG
AGACCTTCCTACAAGTTATGAATTTTTGCTG back to topCoding sequence (CDS) from alignment at ch3:2204479..2205609+ >KJC3_003536-T1 ID=KJC3_003536-T1|Name=KJC3_003536-T1|organism=Aspergillus niger KJC3|type=CDS|length=1542bp|location=Sequence derived from alignment at ch3:2204479..2205609+ (Aspergillus niger KJC3)
ATGGGCCAACAACCATCCGCACCCCGTCCAGGCACGCAGCTCCAAGTGAT
CGGCGGGGGCCTCTCCCGCACAGGAACTGCCTCCTTCAGCGCCGCCCTGG
AGATCCTCCTCGACGGGCCCATCTATCACGGGGGCACCCAAACCACCATG
GGTCCGCCCATCGAGATGAAGTCCTGGATCGAGATCCTGCGCGTCTGGCT
CGCCGGCGACCGCACCACAGCTCTTTCTCTCATGCGGCGTCGCACCGAGG
GCTACGCCGCCATCACAGACTCCCCTGCCTCGCACTTCGTCCCGGAACTA
ATCGAGCTGTATCCTGAGGCCAAGGTCATTGTGACCGTGCGGGACAGAGA
AGCATGGGTTAAGAGCATGGCGCAGATCAGCTCGTTGGCTACGATGTGGT
TTTTGAGGGGGGTGTTGTTGCCGTTGCCTGGAATGCGCCACTTCGTCACA
TACATCGAATGTCTCCAAGCACAGTGGGACACTCGCTACGATGGCTGTCG
AGATAATACTTGGATTTATGATCGTCATATTGAGTGGTTGAAGGAGGTTG
TTCCCGCTGATCGTTTGGTTTTCTTTAATGTCAAGGAAGGCTGGGAGCCG
CTTTGTCGCGCGCTGGGGAAGGAGGTTCCTAAGGATATTCCGTTTCCGAG
AGTTAACGACTCCCAGGCAATCAACCGGGTGGCTGAGTATCATATCAAGC
GTGGGTTGCTGCGTTGGGCGGTGGCTTTTGCTGTTGTGGGTGTGCTTGGG
GGATGGTGGTATTTGGGGTGAATGGGCCAACAACCATCCGCACCCCGTCC
AGGCACGCAGCTCCAAGTGATCGGCGGGGGCCTCTCCCGCACAGGAACTG
CCTCCTTCAGCGCCGCCCTGGAGATCCTCCTCGACGGGCCCATCTATCAC
GGGGGCACCCAAACCACCATGGGTCCGCCCATCGAGATGAAGTCCTGGAT
CGAGATCCTGCGCGTCTGGCTCGCCGGCGACCGCACCACAGCTCTTTCTC
TCATGCGGCGTCGCACCGAGGGCTACGCCGCCATCACAGACTCCCCTGCC
TCGCACTTCGTCCCGGAACTAATCGAGCTGTATCCTGAGGCCAAGGTCAT
TGTGACCGTGCGGGACAGAGAAGCATGGGTTAAGAGCATGGCGCAGATCA
GCTCGTTGGCTACGATGTGGTTTTTGAGGGGGGTGTTGTTGCCGTTGCCT
GGAATGCGCCACTTCGTCACATACATCGAATGTCTCCAAGCACAGTGGGA
CACTCGCTACGATGGCTGTCGAGATAATACTTGGATTTATGATCGTCATA
TTGAGTGGTTGAAGGAGGTTGTTCCCGCTGATCGTTTGGTTTTCTTTAAT
GTCAAGGAAGGCTGGGAGCCGCTTTGTCGCGCGCTGGGGAAGGAGGTTCC
TAAGGATATTCCGTTTCCGAGAGTTAACGACTCCCAGGCAATCAACCGGG
TGGCTGAGTATCATATCAAGCGTGGGTTGCTGCGTTGGGCGGTGGCTTTT
GCTGTTGTGGGTGTGCTTGGGGGATGGTGGTATTTGGGGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003536-T1.utr5p1 | KJC3_003536-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003536-T1.utr3p1 | KJC3_003536-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR040632 |
| DBxref | PFAM:PF17784 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2204479..2205609 + |
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