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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2271301..2274004+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003559-T1 ID=KJC3_003559-T1|Name=KJC3_003559-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2704bp|location=Sequence derived from alignment at ch3:2271301..2274004+ (Aspergillus niger KJC3)
CATGACGTTACGCCCTTAATCCCGTATCCTTCTCTCTAATACACCCTTAC
TCGAATTCACCATGCCGGAGAGGGTCCGTACCGTTTTTAATGACGAGGGC
GACGCCGTCCCCGCCCCTAGCAAACCGTCGTCGCAAAAAGCCGAACAAGG
CGACTCCGCACCCGTCACGAAGCGAAAGGTCCACAGCAAGGAAGACGACC
ACAAGCGGAAGAACAAGAAGCGGAAGCATGAGAATGGATTTATCGTGAAG
GGGGACAAGCCCGAGAATCTCAACATGGAGGCACCCCCTCAGCCTGAGCA
GAACGGAACCGGCCCCGGGTCGGACGACAAGCCAGCGATCAAGAAGCAGA
AACAAGAAGAATCACAACCGCAGAAGCCAATGAAGGATGGAAAACGAAAA
GATAAGCATCAGAAATCCAAAAACACCAATTTCACGCCGCTACGAGAAAA
GGCGCAAGCGTTATACCAACAACGCAAGAACCTCCCTATCTTCCCTCATG
GCGATGAGATCCGCGGCCACTTGCGCAAGAACGATGTGATGCTGTTGGTT
GGTGAGACGGGTAGCGGAAAGAGTACACAGATTCCTCAGTTTCTGGTTAA
TGAGAAATGGTGTCGGACGGCTAAGACGGTTGTGCGGGACAGTGATGGTG
CGGAGAAGGAGATTCCTGTTGGAGGGTGTATTGCCATCACGCAGCCTAGA
CGAGTGGCGGCGATTTCGCTGGCGAGACGTGTGGCAGAGGAAATGGGGAC
TCCGTTGGGAAATTCATCGCCTGCGAGTAAAGTTGGGTATTCGGTTCGGT
TTGATACGTCGACGTCGCCGAGTACGCAGGTCAAATTTTTGACGGAGGGA
ATGCTGTTGCAGGAGATGCTGCATGATCCGTGGTTGACGAAGTATAGTGC
TATTGTGGTGGATGAAGTGCACGAGCGTGGTGTCAATGTTGATCAGGTGC
TGGGTTTTCTGAGGAACTTGGTGTCGGGGAAGAGGGAAGGACGGGGTGGT
GTGCCTTTGAAGGTCGTGGTGATGAGTGCTACGGCGGATATGGAGAGTCT
GATGGGCTTCTTCAAGGAAGGGTTCCAGGGTAGTCCCCGTGCGATTGAAG
CAGCGAAGAAGGAGACAAATGGAGATTCGGCAGACCAGAAGAGTGAGGAT
GATATTGCTGTGTGCCATATCAAGGGACGTCAGTTCCCCGTCAAAACGAT
CTACTCTCCCGAACCAGTGCATGACTTTGTTGATGCGGCTCTCAAGGTCA
TCTTCCAGATCCATTACAAGGAGCCGTGCCCTGGTGACATCCTGGTCTTC
CTGACTGGTCAAGAGACAGTGGAGGCCTTGGAGAACCTCGTCAACGAGTA
CGCAACCGGGATGGATCCGGCGCTGCCCAAGATCCAAGTACTCCCACTCT
TCGCAGCGCTCCCTCAAGCAGCTCAACAGCGAGTGTTCGTCCCTGCTCCC
CCACGGACCCGCAAGATCATCCTCGCTACAAACATCGCGGAAACCTCTGT
GACAGTCTCAGGAGTGCGATTTGTGGTGGACTGCGGAAAGGCCAAGGTCA
AGCAATTCCGCTCCCGTCTCGGACTAGACTCGTTGCTCGTCAAGCCCATC
TCCAAGTCAGCCGCAATCCAGCGTAAGGGTCGTGCCGGTCGAGAAGCCCC
GGGTCAGTGCTATCGACTCTACACAGAGAAAGATTACCTAGCTCTGGATG
AGGTCAACACGCCAGAGATCCTACGCTGCGACATCAGTCAAGCCCTGCTC
AACATGAAAGCCCGTGGTGTGGACGACATTATGAACTTTCCCTTCCTGAC
ACGGCCCCCGCGCGAGGCACTGGAGATGGCACTGCTCCAGCTCCTGAGCA
TTGAAGCCCTAGAGGAAACCGGCAAGATCAGCCAAATCGGATTGCAGATC
GCCAAGCTACCTCTTACCCCGACACTGGGTCGTGTGCTTCTCGCAGCTTC
AGAATACGGCCCAGAATGCTTGTTAGACGTGATTGACATCATCTCCTGTC
TCAGTGTCGAGAACATCTTCCTGAACATCACATCAGAGGAAAAGAAAGAA
GAAGCCGAAGTAGCGCGCCGGGATCTCTACAGACGAGAGGGCGACCACCT
CACCATGCTCGCTACAGTACAGGCCTACGCAGCAGAGAATACCGATAGAA
AGGCATGGGCTGAGCGGCATCTGGTCTCCCACCGGGCCATGCAATCCGTA
ATGGTAAGACTACCTTCCACCCACTCTTTCTAGTAACCCACAACTAACAA
GAAATTCATACAGGACGTCCGCAAACAACTCACAACCCAATGCCGCCAAG
CCAAGCTTCTCCCTAACGACGCCCGTGGCTCAGCCGCAAGCACATCCGTC
CGTGACCCCTCACCCATCCACATCCTGAAGAGTTTCCTGCGCGGGTTCTC
GACGAACACGGCGCGTCTGGTGCCGGATGGTAGCTACCGCACGGTGGTGG
GTAACCAGACGGTGGCGATTCATCCGTCTAGTGTGCTGTTTGGAAAGAAG
GTCGAAGCGATCATGTATAATGAATTTGTGTTTACGAACCGCAGTTATGC
GCGGGGTGTGAGTGCGGTGCAGATGGATTGGGTGGGGGAGGCGCTGGCTG
GGTAGATTCTCCTATGAATAGACAGTAAGGAGTGTGGTTTATATTAGATG
GATAGATAGATAGTTGGATATACCCAGAGCATACTTGTGAAGAATATTAG
AAGC back to topCoding sequence (CDS) from alignment at ch3:2271301..2274004+ >KJC3_003559-T1 ID=KJC3_003559-T1|Name=KJC3_003559-T1|organism=Aspergillus niger KJC3|type=CDS|length=4968bp|location=Sequence derived from alignment at ch3:2271301..2274004+ (Aspergillus niger KJC3)
ATGCCGGAGAGGGTCCGTACCGTTTTTAATGACGAGGGCGACGCCGTCCC
CGCCCCTAGCAAACCGTCGTCGCAAAAAGCCGAACAAGGCGACTCCGCAC
CCGTCACGAAGCGAAAGGTCCACAGCAAGGAAGACGACCACAAGCGGAAG
AACAAGAAGCGGAAGCATGAGAATGGATTTATCGTGAAGGGGGACAAGCC
CGAGAATCTCAACATGGAGGCACCCCCTCAGCCTGAGCAGAACGGAACCG
GCCCCGGGTCGGACGACAAGCCAGCGATCAAGAAGCAGAAACAAGAAGAA
TCACAACCGCAGAAGCCAATGAAGGATGGAAAACGAAAAGATAAGCATCA
GAAATCCAAAAACACCAATTTCACGCCGCTACGAGAAAAGGCGCAAGCGT
TATACCAACAACGCAAGAACCTCCCTATCTTCCCTCATGGCGATGAGATC
CGCGGCCACTTGCGCAAGAACGATGTGATGCTGTTGGTTGGTGAGACGGG
TAGCGGAAAGAGTACACAGATTCCTCAGTTTCTGGTTAATGAGAAATGGT
GTCGGACGGCTAAGACGGTTGTGCGGGACAGTGATGGTGCGGAGAAGGAG
ATTCCTGTTGGAGGGTGTATTGCCATCACGCAGCCTAGACGAGTGGCGGC
GATTTCGCTGGCGAGACGTGTGGCAGAGGAAATGGGGACTCCGTTGGGAA
ATTCATCGCCTGCGAGTAAAGTTGGGTATTCGGTTCGGTTTGATACGTCG
ACGTCGCCGAGTACGCAGGTCAAATTTTTGACGGAGGGAATGCTGTTGCA
GGAGATGCTGCATGATCCGTGGTTGACGAAGTATAGTGCTATTGTGGTGG
ATGAAGTGCACGAGCGTGGTGTCAATGTTGATCAGGTGCTGGGTTTTCTG
AGGAACTTGGTGTCGGGGAAGAGGGAAGGACGGGGTGGTGTGCCTTTGAA
GGTCGTGGTGATGAGTGCTACGGCGGATATGGAGAGTCTGATGGGCTTCT
TCAAGGAAGGGTTCCAGGGTAGTCCCCGTGCGATTGAAGCAGCGAAGAAG
GAGACAAATGGAGATTCGGCAGACCAGAAGAGTGAGGATGATATTGCTGT
GTGCCATATCAAGGGACGTCAGTTCCCCGTCAAAACGATCTACTCTCCCG
AACCAGTGCATGACTTTGTTGATGCGGCTCTCAAGGTCATCTTCCAGATC
CATTACAAGGAGCCGTGCCCTGGTGACATCCTGGTCTTCCTGACTGGTCA
AGAGACAGTGGAGGCCTTGGAGAACCTCGTCAACGAGTACGCAACCGGGA
TGGATCCGGCGCTGCCCAAGATCCAAGTACTCCCACTCTTCGCAGCGCTC
CCTCAAGCAGCTCAACAGCGAGTGTTCGTCCCTGCTCCCCCACGGACCCG
CAAGATCATCCTCGCTACAAACATCGCGGAAACCTCTGTGACAGTCTCAG
GAGTGCGATTTGTGGTGGACTGCGGAAAGGCCAAGGTCAAGCAATTCCGC
TCCCGTCTCGGACTAGACTCGTTGCTCGTCAAGCCCATCTCCAAGTCAGC
CGCAATCCAGCGTAAGGGTCGTGCCGGTCGAGAAGCCCCGGGTCAGTGCT
ATCGACTCTACACAGAGAAAGATTACCTAGCTCTGGATGAGGTCAACACG
CCAGAGATCCTACGCTGCGACATCAGTCAAGCCCTGCTCAACATGAAAGC
CCGTGGTGTGGACGACATTATGAACTTTCCCTTCCTGACACGGCCCCCGC
GCGAGGCACTGGAGATGGCACTGCTCCAGCTCCTGAGCATTGAAGCCCTA
GAGGAAACCGGCAAGATCAGCCAAATCGGATTGCAGATCGCCAAGCTACC
TCTTACCCCGACACTGGGTCGTGTGCTTCTCGCAGCTTCAGAATACGGCC
CAGAATGCTTGTTAGACGTGATTGACATCATCTCCTGTCTCAGTGTCGAG
AACATCTTCCTGAACATCACATCAGAGGAAAAGAAAGAAGAAGCCGAAGT
AGCGCGCCGGGATCTCTACAGACGAGAGGGCGACCACCTCACCATGCTCG
CTACAGTACAGGCCTACGCAGCAGAGAATACCGATAGAAAGGCATGGGCT
GAGCGGCATCTGGTCTCCCACCGGGCCATGCAATCCGTAATGGACGTCCG
CAAACAACTCACAACCCAATGCCGCCAAGCCAAGCTTCTCCCTAACGACG
CCCGTGGCTCAGCCGCAAGCACATCCGTCCGTGACCCCTCACCCATCCAC
ATCCTGAAGAGTTTCCTGCGCGGGTTCTCGACGAACACGGCGCGTCTGGT
GCCGGATGGTAGCTACCGCACGGTGGTGGGTAACCAGACGGTGGCGATTC
ATCCGTCTAGTGTGCTGTTTGGAAAGAAGGTCGAAGCGATCATGTATAAT
GAATTTGTGTTTACGAACCGCAGTTATGCGCGGGGTGTGAGTGCGGTGCA
GATGGATTGGGTGGGGGAGGCGCTGGCTGGGTAGATGCCGGAGAGGGTCC
GTACCGTTTTTAATGACGAGGGCGACGCCGTCCCCGCCCCTAGCAAACCG
TCGTCGCAAAAAGCCGAACAAGGCGACTCCGCACCCGTCACGAAGCGAAA
GGTCCACAGCAAGGAAGACGACCACAAGCGGAAGAACAAGAAGCGGAAGC
ATGAGAATGGATTTATCGTGAAGGGGGACAAGCCCGAGAATCTCAACATG
GAGGCACCCCCTCAGCCTGAGCAGAACGGAACCGGCCCCGGGTCGGACGA
CAAGCCAGCGATCAAGAAGCAGAAACAAGAAGAATCACAACCGCAGAAGC
CAATGAAGGATGGAAAACGAAAAGATAAGCATCAGAAATCCAAAAACACC
AATTTCACGCCGCTACGAGAAAAGGCGCAAGCGTTATACCAACAACGCAA
GAACCTCCCTATCTTCCCTCATGGCGATGAGATCCGCGGCCACTTGCGCA
AGAACGATGTGATGCTGTTGGTTGGTGAGACGGGTAGCGGAAAGAGTACA
CAGATTCCTCAGTTTCTGGTTAATGAGAAATGGTGTCGGACGGCTAAGAC
GGTTGTGCGGGACAGTGATGGTGCGGAGAAGGAGATTCCTGTTGGAGGGT
GTATTGCCATCACGCAGCCTAGACGAGTGGCGGCGATTTCGCTGGCGAGA
CGTGTGGCAGAGGAAATGGGGACTCCGTTGGGAAATTCATCGCCTGCGAG
TAAAGTTGGGTATTCGGTTCGGTTTGATACGTCGACGTCGCCGAGTACGC
AGGTCAAATTTTTGACGGAGGGAATGCTGTTGCAGGAGATGCTGCATGAT
CCGTGGTTGACGAAGTATAGTGCTATTGTGGTGGATGAAGTGCACGAGCG
TGGTGTCAATGTTGATCAGGTGCTGGGTTTTCTGAGGAACTTGGTGTCGG
GGAAGAGGGAAGGACGGGGTGGTGTGCCTTTGAAGGTCGTGGTGATGAGT
GCTACGGCGGATATGGAGAGTCTGATGGGCTTCTTCAAGGAAGGGTTCCA
GGGTAGTCCCCGTGCGATTGAAGCAGCGAAGAAGGAGACAAATGGAGATT
CGGCAGACCAGAAGAGTGAGGATGATATTGCTGTGTGCCATATCAAGGGA
CGTCAGTTCCCCGTCAAAACGATCTACTCTCCCGAACCAGTGCATGACTT
TGTTGATGCGGCTCTCAAGGTCATCTTCCAGATCCATTACAAGGAGCCGT
GCCCTGGTGACATCCTGGTCTTCCTGACTGGTCAAGAGACAGTGGAGGCC
TTGGAGAACCTCGTCAACGAGTACGCAACCGGGATGGATCCGGCGCTGCC
CAAGATCCAAGTACTCCCACTCTTCGCAGCGCTCCCTCAAGCAGCTCAAC
AGCGAGTGTTCGTCCCTGCTCCCCCACGGACCCGCAAGATCATCCTCGCT
ACAAACATCGCGGAAACCTCTGTGACAGTCTCAGGAGTGCGATTTGTGGT
GGACTGCGGAAAGGCCAAGGTCAAGCAATTCCGCTCCCGTCTCGGACTAG
ACTCGTTGCTCGTCAAGCCCATCTCCAAGTCAGCCGCAATCCAGCGTAAG
GGTCGTGCCGGTCGAGAAGCCCCGGGTCAGTGCTATCGACTCTACACAGA
GAAAGATTACCTAGCTCTGGATGAGGTCAACACGCCAGAGATCCTACGCT
GCGACATCAGTCAAGCCCTGCTCAACATGAAAGCCCGTGGTGTGGACGAC
ATTATGAACTTTCCCTTCCTGACACGGCCCCCGCGCGAGGCACTGGAGAT
GGCACTGCTCCAGCTCCTGAGCATTGAAGCCCTAGAGGAAACCGGCAAGA
TCAGCCAAATCGGATTGCAGATCGCCAAGCTACCTCTTACCCCGACACTG
GGTCGTGTGCTTCTCGCAGCTTCAGAATACGGCCCAGAATGCTTGTTAGA
CGTGATTGACATCATCTCCTGTCTCAGTGTCGAGAACATCTTCCTGAACA
TCACATCAGAGGAAAAGAAAGAAGAAGCCGAAGTAGCGCGCCGGGATCTC
TACAGACGAGAGGGCGACCACCTCACCATGCTCGCTACAGTACAGGCCTA
CGCAGCAGAGAATACCGATAGAAAGGCATGGGCTGAGCGGCATCTGGTCT
CCCACCGGGCCATGCAATCCGTAATGGACGTCCGCAAACAACTCACAACC
CAATGCCGCCAAGCCAAGCTTCTCCCTAACGACGCCCGTGGCTCAGCCGC
AAGCACATCCGTCCGTGACCCCTCACCCATCCACATCCTGAAGAGTTTCC
TGCGCGGGTTCTCGACGAACACGGCGCGTCTGGTGCCGGATGGTAGCTAC
CGCACGGTGGTGGGTAACCAGACGGTGGCGATTCATCCGTCTAGTGTGCT
GTTTGGAAAGAAGGTCGAAGCGATCATGTATAATGAATTTGTGTTTACGA
ACCGCAGTTATGCGCGGGGTGTGAGTGCGGTGCAGATGGATTGGGTGGGG
GAGGCGCTGGCTGGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004386 | helicase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003559-T1.utr5p1 | KJC3_003559-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003559-T1.utr3p1 | KJC3_003559-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR002464 |
| DBxref | InterPro:IPR011709 |
| DBxref | InterPro:IPR007502 |
| DBxref | InterPro:IPR014001 |
| DBxref | InterPro:IPR001650 |
| DBxref | PFAM:PF07717 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF04408 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2271301..2274004 + |
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