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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2310232..2311899- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003571-T1 ID=KJC3_003571-T1|Name=KJC3_003571-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1668bp|location=Sequence derived from alignment at ch3:2310232..2311899- (Aspergillus niger KJC3)
CTTTCATTCATCTCCATTACTTCAAAGAACTTGTTGCCTTTGCTTCTCGG
GTATTCCCCCAGGGCTTTGTTCAGTTCTTATCAGCTTCTTGTCTCCGGAC
TTCAGAGAATTCACCTCTCTCCCCTCCGCGCATCTTCCTCAAACCACCAC
CTCCACCTCCTCTTCAACCACCAAAACACCTATCTATACCCTCCCCTCTT
TTCTCCCTCCACCACAGTCATGGCTCCCGGAGCCGGAAAGAGTGTCTTCC
TGGGGAATATCCCTTATAGTATGTTCCCTGTCTCTGTCTTGCATCCACCA
CAACCACCCCAATGGCATCAAACTAACCCATCACTTCTCAGACCTCACGG
AAGAACAAGTTAAAGACATCCTCAGCTCCGCCGGCACAGTAACCAAATTC
CGCCTGATGATGAACCCTGAGACCGGTAAGCCCAAAGGTTACGGTTTCGC
CGACTTTGCCGACGCCGATGCGGCCGCCTCCGCTGTCCGCAACTTGAACG
ACTACGAGATCATGGGCCGCAAGATTCGGGTCGACTGGCCGCACAACAAT
GAAAAGGACTCCATACCCCCCGACTACTCCCAGCTCTCCGCACCCGCTGT
CCAAGACGGCTCCCAACAGCAACAACAGCAGCAGTCCGCGCCTCTTCCTC
CTCTGCCCCCGGGTGTCGAAGTTCCCCCGCATCTCGATTGCCCCAACGCC
ATCTCTCAGACACTCGCTTCCCTGCCCCCGAACCAGCTCCTCGATGTCCT
CTCCCAGATGAAGTCGCTTGTCATGGCGGATCCCGCCAGAGCGACAGAGC
TTCTACGCCAAGCTCCTCAGCTCGCCTACGCAATCTTCCAAGCATTGCTA
CTCATGAACCTGGTCGATTACGGTGCTCTAGGCTCGGTGGTGGAACAAGC
GAGCCAACCTAGTGCACCTGCACCCCCTCCTGCCGCCGCGCAAGCCTTCC
AACCCTTCTCCGCTGTACCGGGACCGGTGTCTACGCCTCCAATGGTCAAC
ACTCCTTTCGCTGCTGCCGCCGCCCCGCCGCAACAACCCCCGCAGGCTAT
GCCAGGACAGGAAGAGCTCCTACAGCAAGTGCTCAGTATGCCGCAAGCTG
CGATCGATGCGCTCCCACCCATGGAGCGCAGCCAGATCATGCTCCTTCGG
CAGCAGTTGATGCAGGGTGCTATGCGGTGATTGAATATCACCTCTTATTT
ACCCCTCTGAAACTATCTTATACCCCCTCCCTCCCTCTCCCTCTTATCTC
CCGAATGAGGAACAAAAGGAACCGGGCGCAAAGCAGCATCAGGCGGCACA
TCTGACGCAGAATGCCTCGGCACGAACAACCGAATTTGTTCTACAACCCT
TTCATCTCTCCATCTTGATGTTAGCAACGTCATAGCTTTCATTGATTGAC
TGATTGATCAACAACCGGAACCGGGTGTGAGTTTTGGCGCAATACGGGCA
TGTTGGTGGGGTTTTAAATTGCGGGTTTTTCTTCTACTGGGTTGTGAGAT
ACGGACTGGACTGGGAGACCATCATCTTATTGCTCTCCCTTTCCTCTCCC
TTTCTTTTTCTCGTTCTCAAAGTTCCGGAATGTACATGATAGTATAGCAG
CAGCTGTAGCGGATATCCCAGCAAATTGGTTTTGCTTCCAGACAGATCAG
CAGTGTTGTAAACTCCTA back to topCoding sequence (CDS) from alignment at ch3:2310232..2311899- >KJC3_003571-T1 ID=KJC3_003571-T1|Name=KJC3_003571-T1|organism=Aspergillus niger KJC3|type=CDS|length=1776bp|location=Sequence derived from alignment at ch3:2310232..2311899- (Aspergillus niger KJC3)
ACCTCACGGAAGAACAAGTTAAAGACATCCTCAGCTCCGCCGGCACAGTA
ACCAAATTCCGCCTGATGATGAACCCTGAGACCGGTAAGCCCAAAGGTTA
CGGTTTCGCCGACTTTGCCGACGCCGATGCGGCCGCCTCCGCTGTCCGCA
ACTTGAACGACTACGAGATCATGGGCCGCAAGATTCGGGTCGACTGGCCG
CACAACAATGAAAAGGACTCCATACCCCCCGACTACTCCCAGCTCTCCGC
ACCCGCTGTCCAAGACGGCTCCCAACAGCAACAACAGCAGCAGTCCGCGC
CTCTTCCTCCTCTGCCCCCGGGTGTCGAAGTTCCCCCGCATCTCGATTGC
CCCAACGCCATCTCTCAGACACTCGCTTCCCTGCCCCCGAACCAGCTCCT
CGATGTCCTCTCCCAGATGAAGTCGCTTGTCATGGCGGATCCCGCCAGAG
CGACAGAGCTTCTACGCCAAGCTCCTCAGCTCGCCTACGCAATCTTCCAA
GCATTGCTACTCATGAACCTGGTCGATTACGGTGCTCTAGGCTCGGTGGT
GGAACAAGCGAGCCAACCTAGTGCACCTGCACCCCCTCCTGCCGCCGCGC
AAGCCTTCCAACCCTTCTCCGCTGTACCGGGACCGGTGTCTACGCCTCCA
ATGGTCAACACTCCTTTCGCTGCTGCCGCCGCCCCGCCGCAACAACCCCC
GCAGGCTATGCCAGGACAGGAAGAGCTCCTACAGCAAGTGCTCAGTATGC
CGCAAGCTGCGATCGATGCGCTCCCACCCATGGAGCGCAGCCAGATCATG
CTCCTTCGGCAGCAGTTGATGCAGGGTGCTATGCGGTGAATGGCTCCCGG
AGCCGGAAAGAGTGTCTTCCTGGGGAATATCCCTTATAACCTCACGGAAG
AACAAGTTAAAGACATCCTCAGCTCCGCCGGCACAGTAACCAAATTCCGC
CTGATGATGAACCCTGAGACCGGTAAGCCCAAAGGTTACGGTTTCGCCGA
CTTTGCCGACGCCGATGCGGCCGCCTCCGCTGTCCGCAACTTGAACGACT
ACGAGATCATGGGCCGCAAGATTCGGGTCGACTGGCCGCACAACAATGAA
AAGGACTCCATACCCCCCGACTACTCCCAGCTCTCCGCACCCGCTGTCCA
AGACGGCTCCCAACAGCAACAACAGCAGCAGTCCGCGCCTCTTCCTCCTC
TGCCCCCGGGTGTCGAAGTTCCCCCGCATCTCGATTGCCCCAACGCCATC
TCTCAGACACTCGCTTCCCTGCCCCCGAACCAGCTCCTCGATGTCCTCTC
CCAGATGAAGTCGCTTGTCATGGCGGATCCCGCCAGAGCGACAGAGCTTC
TACGCCAAGCTCCTCAGCTCGCCTACGCAATCTTCCAAGCATTGCTACTC
ATGAACCTGGTCGATTACGGTGCTCTAGGCTCGGTGGTGGAACAAGCGAG
CCAACCTAGTGCACCTGCACCCCCTCCTGCCGCCGCGCAAGCCTTCCAAC
CCTTCTCCGCTGTACCGGGACCGGTGTCTACGCCTCCAATGGTCAACACT
CCTTTCGCTGCTGCCGCCGCCCCGCCGCAACAACCCCCGCAGGCTATGCC
AGGACAGGAAGAGCTCCTACAGCAAGTGCTCAGTATGCCGCAAGCTGCGA
TCGATGCGCTCCCACCCATGGAGCGCAGCCAGATCATGCTCCTTCGGCAG
CAGTTGATGCAGGGTGCTATGCGGTGAATGGCTCCCGGAGCCGGAAAGAG
TGTCTTCCTGGGGAATATCCCTTATA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031124 | mRNA 3'-end processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003571-T1.utr3p1 | KJC3_003571-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003571-T1.utr5p1 | KJC3_003571-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR025742 |
| DBxref | InterPro:IPR026896 |
| DBxref | InterPro:IPR038192 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| DBxref | PFAM:PF14304 |
| DBxref | PFAM:PF14327 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2310232..2311899 - |
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