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KJC3_003590-T1, KJC3_003590-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003590-T1
Unique NameKJC3_003590-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:2368727..2369550-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003590-T1 ID=KJC3_003590-T1|Name=KJC3_003590-T1|organism=Aspergillus niger KJC3|type=mRNA|length=824bp|location=Sequence derived from alignment at ch3:2368727..2369550- (Aspergillus niger KJC3)
CACAGTATCCTATCCTATCTTTTCCCACAAACAGAAACCAATTGCTGTAC
CAGCTTAAGTTCAAAATGGATTCTCAACCGTCATCGAAAGCGCTTCATTG
TAAGCCGTACCCTGCATTTTTCACTTACCTCAGTTCCAAACCCCTCCATT
GCACCGCTAACAACCATCCGTCGCAGATCGCATCAACACCAACATCTCGC
AATTACTCCAACGCTTCGAGAACATCATGGCAACAGCGACTGTTAGCTCA
CCTCACCCTCTTGCAATCTACACAAACCGGATAATCACTAACCCAGAAAT
CCAGACCGAAAGTACCAGCCACACCTCCACGGCCGTCGAGACATACCAGC
TAGATGTGGAATCCACAGCGTTGGTACGTTCCAACTAATGCTCCTCTAAT
CCAACACAAACACAAATCCTACAATGTCAGGGAACACTTACTTACAGAAT
TGAATCTGAGATAGGTCCGCGCAGCAGAAGACATCCTCGCCCTGACCCGG
ACAATGAAAGAAACCTGGTTATTCGGGAAACTCGACACACTAGGCGAAGA
CGAAGCGGACGTGAAACGTCGCGAGGAACTAGAGATGAATGCGGAGGCGA
TTCAAAAGGCCATTGAAGATGGGGGGTTTTTGAAGGCTGCTAAGTGAGGA
TCAGCTTTGAGGTGTATACTGTGGGTGCATGGCGTATAGTGGGTTGGTTT
ATCTATTGCATGGAGTTGGTGGGTTGGCGTTCGGGTATGCTTCTAGAAAG
TGGTACTTCTAAATCCTGATGTTGATGTAAATAGTAGTTATGTGTATATA
TAAAATCATATCATAGAATGCCCC
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Coding sequence (CDS) from alignment at ch3:2368727..2369550-

>KJC3_003590-T1 ID=KJC3_003590-T1|Name=KJC3_003590-T1|organism=Aspergillus niger KJC3|type=CDS|length=1242bp|location=Sequence derived from alignment at ch3:2368727..2369550- (Aspergillus niger KJC3)
GTCCGCGCAGCAGAAGACATCCTCGCCCTGACCCGGACAATGAAAGAAAC
CTGGTTATTCGGGAAACTCGACACACTAGGCGAAGACGAAGCGGACGTGA
AACGTCGCGAGGAACTAGAGATGAATGCGGAGGCGATTCAAAAGGCCATT
GAAGATGGGGGGTTTTTGAAGGCTGCTAAGTGAATCGCATCAACACCAAC
ATCTCGCAATTACTCCAACGCTTCGAGAACATCATGGCAACAGCGACTGT
TAGCTCACCTCACCCTCTTGCAATCTACACAAACCGGATAATCACTAACC
CAGAAATCCAGACCGAAAGTACCAGCCACACCTCCACGGCCGTCGAGACA
TACCAGCTAGATGTGGAATCCACAGCGTTGATGGATTCTCAACCGTCATC
GAAAGCGCTTCATTGTCCGCGCAGCAGAAGACATCCTCGCCCTGACCCGG
ACAATGAAAGAAACCTGGTTATTCGGGAAACTCGACACACTAGGCGAAGA
CGAAGCGGACGTGAAACGTCGCGAGGAACTAGAGATGAATGCGGAGGCGA
TTCAAAAGGCCATTGAAGATGGGGGGTTTTTGAAGGCTGCTAAGTGAATC
GCATCAACACCAACATCTCGCAATTACTCCAACGCTTCGAGAACATCATG
GCAACAGCGACTGTTAGCTCACCTCACCCTCTTGCAATCTACACAAACCG
GATAATCACTAACCCAGAAATCCAGACCGAAAGTACCAGCCACACCTCCA
CGGCCGTCGAGACATACCAGCTAGATGTGGAATCCACAGCGTTGATGGAT
TCTCAACCGTCATCGAAAGCGCTTCATTGTCCGCGCAGCAGAAGACATCC
TCGCCCTGACCCGGACAATGAAAGAAACCTGGTTATTCGGGAAACTCGAC
ACACTAGGCGAAGACGAAGCGGACGTGAAACGTCGCGAGGAACTAGAGAT
GAATGCGGAGGCGATTCAAAAGGCCATTGAAGATGGGGGGTTTTTGAAGG
CTGCTAAGTGAATCGCATCAACACCAACATCTCGCAATTACTCCAACGCT
TCGAGAACATCATGGCAACAGCGACTGTTAGCTCACCTCACCCTCTTGCA
ATCTACACAAACCGGATAATCACTAACCCAGAAATCCAGACCGAAAGTAC
CAGCCACACCTCCACGGCCGTCGAGACATACCAGCTAGATGTGGAATCCA
CAGCGTTGATGGATTCTCAACCGTCATCGAAAGCGCTTCATT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003590KJC3_003590Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003590-T1KJC3_003590-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003590-T1.cdsKJC3_003590-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003590-T1.utr3p1KJC3_003590-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003590-T1.exon3KJC3_003590-T1.exon3Aspergillus niger KJC3exon
KJC3_003590-T1.exon2KJC3_003590-T1.exon2Aspergillus niger KJC3exon
KJC3_003590-T1.exon1KJC3_003590-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003590-T1.utr5p1KJC3_003590-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR038427
DBxrefInterPro:IPR009332
DBxrefPFAM:PF06179
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:2368727..2369550 -
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