|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2377505..2379968+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003594-T1 ID=KJC3_003594-T1|Name=KJC3_003594-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2464bp|location=Sequence derived from alignment at ch3:2377505..2379968+ (Aspergillus niger KJC3)
TGACCGATATAGTATGTCGAAGCACTAACCGCTAGACTAAAAACAATAAA
CCGCTCTTGACTAGCTAGGCGACGGAGAGATATGTGTCCCAACATAATAC
ATTTGATATGGTAAACTACGGCGTTTCTCGTGCCTGTGAGACCTGCAGGA
AACGGCGGAAGAAGGTAAAATACCCATTTTGTGGGCGACAACACAGTGCC
AGACTAATCATATTGAGAGTTGTATAGTGTGATGAAGGCCGCCCTGTAAG
AAACCACGGGCCATTTTCGGGGACCCCAGGGATGCCAGGCTAACATTAGG
CTCTGCGTTGGACAGGCTTGTAGTCGCTGTCTTCAATCGGGGAGAATCTG
CCTCGGGTACAGGAGCAATGACGAATTACGCTTCCGCCATTATGTAGTTC
CTGCGAACAAGCCTGTCCAATTGCTCTTCCCGCCCCAAAGCAGGATAGTG
ACCACGAATGATCCTGTTGGTCTATTCCTTGACCAGTATGTTGTCTGTTC
GAGAGATTCTCGAGTCTCCCGCGGGTTCCTGGATGGTTTACCCTCGCTCC
TCGCCAGCGTTCATCCCTCTTCAGACCTCGTCCGGGCCGTCGAGATTGTC
GCTTGGGCAACCCTGGGCAATAAAATCTCTCGGCCGGATCTTTTAGCCAG
GGCAAGAAGGCAGTATACTGGTCTACTATGCTCCTTCCAGGACTTGCTGC
ATTGCTGCCAGCTACGAGCACCTACCGTGGAAGCATTGGTGATTGCTATC
CTTCTCGGCCTTTATGAGATTGTGAGCAGTGATGAGATTACTCAAGAGCA
ACAGAAGCATGTTGCCCATGTCCGAGGGGTCTGTGCTTTGCTGTTGAGCC
CAAATTCTCCTTTTGATCTACTCTCAAGCACGCAGTTGTTTCAAGTGGCA
AACCCTTTGCTCATTAAGCGTGATCTCCAGGTTCGGATTATTAACACGTC
CCGGATAACACTATGCTAACCTAATGCCAGGTTCAAGATAACCGCGGGGT
TCTTTGTGCGCCCGCGTCGAACCATGCTGTGCACAATTTGGATTCCATCC
TGATAAAATGCCACCCCCTTTTTGAGCATGCAAACACGCAGCTACAGGAT
CCATTAGCCTCATTTTACGAACTACAAAAAACCCTTGATCGTGCTCTTGC
TATCGAACTTGCCTTCTCGCAATGGGGTGCTACTCAGGATGTATCTTGGA
AGGCTGATATAGTGGGCTTTATGAGCCAGCAGGATGCCGAAGCTTCATCA
TGTCCCTTTGCATGGGGCGGCCCCGTACATGCTTACTTTGATATATATGT
TGCAGCTGTCATGAACACATATCGAAAGACATATTTGATGCTATTGGATG
TCTTAATCCGTCTTGCATCTCGAATGGGCGGCTCCATCCAGACAGATAAC
GTTATCAGATGGGAGAAGCAGGCTCACATCCTAATCTATGATATTGTCGC
ATCTATTCCATACCACCTTACCAATAATCTGCACGCGTATCAGCAAGACA
TTCTCTCACTCAACAGTCCTCCAGGCGTTGGTCGCTCTGTGGGAGGCCTA
TTATTGTTACATCCTTTATTTGTACTCTCTACTTGCTCGGCAGTGCCACA
GCCTATTCAAAACCACGCTTTGAAGTGTCTTGCCTGGATTGGGCAACATA
TGGGGATCGGACAAGGCATGCTTATGTCCAAGGTAGTACCATCTCTATCG
TTATGCTCATATGTGTCTAAAATGCCTTTCAGGGGTATACCAGCTTGCCT
TTCCAGGAAACGGCGGAGGGACATGTCCTGATTTGGGCAGGCATGCTACT
ACATCCTGCCGAGAAGCAGACGCAGCTATAACATGATTCGATTGGAGGCA
GGTACCGATGCCCAAAATTTCATAGATCTTGCGCATATTGAGACATAGTT
ATGGACAAGAGTCACAGCCGTACAGTGTTATCTCACTAATTGATTTACCA
ACATCCTTCCAAGTTTTCTATCCGGATATAGCACCTGAAACGGTACAAAG
CTTACATTCGTTTTAATGAAGGTGATTGCTTTCAATCAGTCAACAGCCTT
TTCCGCGACCGCATATACCGTGCCGAGAACAGCATGACTGACTTGGGCTG
GCATGACACTGGCATCAACCACGCGCAGACCCTGGGTGCCCTTGACACAT
AATTTCTCATCTACTACCGACCCCAAAGCACGTGTCCCAAGCGCATGATG
ATAGCTCATCAGCCGATCTCGGACATATTCTCGCGCCTGTTCTACATCCT
GCAAGTTGACCTCAGGCGGCGGCTGCACCCGGGCCAAGACCTGCCCCTTC
ATACGGGGAGATTGGAAGATGTTATCCGCGACCATGACAGCTGTCGCGAG
AGCGTCTACATCAGCGGGGTTTGTCAGGAATCCCAAGTCCACTCTTGGTG
CAGCCTCCGGGTCCCGAGAGGGTCCCGAAAGGGTCCCGAGACTGCGCATG
GGAGCTTCCCCGGG back to topCoding sequence (CDS) from alignment at ch3:2377505..2379968+ >KJC3_003594-T1 ID=KJC3_003594-T1|Name=KJC3_003594-T1|organism=Aspergillus niger KJC3|type=CDS|length=7455bp|location=Sequence derived from alignment at ch3:2377505..2379968+ (Aspergillus niger KJC3)
ATGGTAAACTACGGCGTTTCTCGTGCCTGTGAGACCTGCAGGAAACGGCG
GAAGAAGTGTGATGAAGGCCGCCCTGCTTGTAGTCGCTGTCTTCAATCGG
GGAGAATCTGCCTCGGGTACAGGAGCAATGACGAATTACGCTTCCGCCAT
TATGTAGTTCCTGCGAACAAGCCTGTCCAATTGCTCTTCCCGCCCCAAAG
CAGGATAGTGACCACGAATGATCCTGTTGGTCTATTCCTTGACCAGTATG
TTGTCTGTTCGAGAGATTCTCGAGTCTCCCGCGGGTTCCTGGATGGTTTA
CCCTCGCTCCTCGCCAGCGTTCATCCCTCTTCAGACCTCGTCCGGGCCGT
CGAGATTGTCGCTTGGGCAACCCTGGGCAATAAAATCTCTCGGCCGGATC
TTTTAGCCAGGGCAAGAAGGCAGTATACTGGTCTACTATGCTCCTTCCAG
GACTTGCTGCATTGCTGCCAGCTACGAGCACCTACCGTGGAAGCATTGGT
GATTGCTATCCTTCTCGGCCTTTATGAGATTGTGAGCAGTGATGAGATTA
CTCAAGAGCAACAGAAGCATGTTGCCCATGTCCGAGGGGTCTGTGCTTTG
CTGTTGAGCCCAAATTCTCCTTTTGATCTACTCTCAAGCACGCAGTTGTT
TCAAGTGGCAAACCCTTTGCTCATTAAGCGTGATCTCCAGGTTCAAGATA
ACCGCGGGGTTCTTTGTGCGCCCGCGTCGAACCATGCTGTGCACAATTTG
GATTCCATCCTGATAAAATGCCACCCCCTTTTTGAGCATGCAAACACGCA
GCTACAGGATCCATTAGCCTCATTTTACGAACTACAAAAAACCCTTGATC
GTGCTCTTGCTATCGAACTTGCCTTCTCGCAATGGGGTGCTACTCAGGAT
GTATCTTGGAAGGCTGATATAGTGGGCTTTATGAGCCAGCAGGATGCCGA
AGCTTCATCATGTCCCTTTGCATGGGGCGGCCCCGTACATGCTTACTTTG
ATATATATGTTGCAGCTGTCATGAACACATATCGAAAGACATATTTGATG
CTATTGGATGTCTTAATCCGTCTTGCATCTCGAATGGGCGGCTCCATCCA
GACAGATAACGTTATCAGATGGGAGAAGCAGGCTCACATCCTAATCTATG
ATATTGTCGCATCTATTCCATACCACCTTACCAATAATCTGCACGCGTAT
CAGCAAGACATTCTCTCACTCAACAGTCCTCCAGGCGTTGGTCGCTCTGT
GGGAGGCCTATTATTGTTACATCCTTTATTTGTACTCTCTACTTGCTCGG
CAGTGCCACAGCCTATTCAAAACCACGCTTTGAAGTGTCTTGCCTGGATT
GGGCAACATATGGGGATCGGACAAGGCATGCTTATGTCCAAGGGGTATAC
CAGCTTGCCTTTCCAGGAAACGGCGGAGGGACATGTCCTGATTTGGGCAG
GCATGCTACTACATCCTGCCGAGAAGCAGACGCAGCTATAAATGGTAAAC
TACGGCGTTTCTCGTGCCTGTGAGACCTGCAGGAAACGGCGGAAGAAGTG
TGATGAAGGCCGCCCTGCTTGTAGTCGCTGTCTTCAATCGGGGAGAATCT
GCCTCGGGTACAGGAGCAATGACGAATTACGCTTCCGCCATTATGTAGTT
CCTGCGAACAAGCCTGTCCAATTGCTCTTCCCGCCCCAAAGCAGGATAGT
GACCACGAATGATCCTGTTGGTCTATTCCTTGACCAGTATGTTGTCTGTT
CGAGAGATTCTCGAGTCTCCCGCGGGTTCCTGGATGGTTTACCCTCGCTC
CTCGCCAGCGTTCATCCCTCTTCAGACCTCGTCCGGGCCGTCGAGATTGT
CGCTTGGGCAACCCTGGGCAATAAAATCTCTCGGCCGGATCTTTTAGCCA
GGGCAAGAAGGCAGTATACTGGTCTACTATGCTCCTTCCAGGACTTGCTG
CATTGCTGCCAGCTACGAGCACCTACCGTGGAAGCATTGGTGATTGCTAT
CCTTCTCGGCCTTTATGAGATTGTGAGCAGTGATGAGATTACTCAAGAGC
AACAGAAGCATGTTGCCCATGTCCGAGGGGTCTGTGCTTTGCTGTTGAGC
CCAAATTCTCCTTTTGATCTACTCTCAAGCACGCAGTTGTTTCAAGTGGC
AAACCCTTTGCTCATTAAGCGTGATCTCCAGGTTCAAGATAACCGCGGGG
TTCTTTGTGCGCCCGCGTCGAACCATGCTGTGCACAATTTGGATTCCATC
CTGATAAAATGCCACCCCCTTTTTGAGCATGCAAACACGCAGCTACAGGA
TCCATTAGCCTCATTTTACGAACTACAAAAAACCCTTGATCGTGCTCTTG
CTATCGAACTTGCCTTCTCGCAATGGGGTGCTACTCAGGATGTATCTTGG
AAGGCTGATATAGTGGGCTTTATGAGCCAGCAGGATGCCGAAGCTTCATC
ATGTCCCTTTGCATGGGGCGGCCCCGTACATGCTTACTTTGATATATATG
TTGCAGCTGTCATGAACACATATCGAAAGACATATTTGATGCTATTGGAT
GTCTTAATCCGTCTTGCATCTCGAATGGGCGGCTCCATCCAGACAGATAA
CGTTATCAGATGGGAGAAGCAGGCTCACATCCTAATCTATGATATTGTCG
CATCTATTCCATACCACCTTACCAATAATCTGCACGCGTATCAGCAAGAC
ATTCTCTCACTCAACAGTCCTCCAGGCGTTGGTCGCTCTGTGGGAGGCCT
ATTATTGTTACATCCTTTATTTGTACTCTCTACTTGCTCGGCAGTGCCAC
AGCCTATTCAAAACCACGCTTTGAAGTGTCTTGCCTGGATTGGGCAACAT
ATGGGGATCGGACAAGGCATGCTTATGTCCAAGGGGTATACCAGCTTGCC
TTTCCAGGAAACGGCGGAGGGACATGTCCTGATTTGGGCAGGCATGCTAC
TACATCCTGCCGAGAAGCAGACGCAGCTATAAATGGTAAACTACGGCGTT
TCTCGTGCCTGTGAGACCTGCAGGAAACGGCGGAAGAAGTGTGATGAAGG
CCGCCCTGCTTGTAGTCGCTGTCTTCAATCGGGGAGAATCTGCCTCGGGT
ACAGGAGCAATGACGAATTACGCTTCCGCCATTATGTAGTTCCTGCGAAC
AAGCCTGTCCAATTGCTCTTCCCGCCCCAAAGCAGGATAGTGACCACGAA
TGATCCTGTTGGTCTATTCCTTGACCAGTATGTTGTCTGTTCGAGAGATT
CTCGAGTCTCCCGCGGGTTCCTGGATGGTTTACCCTCGCTCCTCGCCAGC
GTTCATCCCTCTTCAGACCTCGTCCGGGCCGTCGAGATTGTCGCTTGGGC
AACCCTGGGCAATAAAATCTCTCGGCCGGATCTTTTAGCCAGGGCAAGAA
GGCAGTATACTGGTCTACTATGCTCCTTCCAGGACTTGCTGCATTGCTGC
CAGCTACGAGCACCTACCGTGGAAGCATTGGTGATTGCTATCCTTCTCGG
CCTTTATGAGATTGTGAGCAGTGATGAGATTACTCAAGAGCAACAGAAGC
ATGTTGCCCATGTCCGAGGGGTCTGTGCTTTGCTGTTGAGCCCAAATTCT
CCTTTTGATCTACTCTCAAGCACGCAGTTGTTTCAAGTGGCAAACCCTTT
GCTCATTAAGCGTGATCTCCAGGTTCAAGATAACCGCGGGGTTCTTTGTG
CGCCCGCGTCGAACCATGCTGTGCACAATTTGGATTCCATCCTGATAAAA
TGCCACCCCCTTTTTGAGCATGCAAACACGCAGCTACAGGATCCATTAGC
CTCATTTTACGAACTACAAAAAACCCTTGATCGTGCTCTTGCTATCGAAC
TTGCCTTCTCGCAATGGGGTGCTACTCAGGATGTATCTTGGAAGGCTGAT
ATAGTGGGCTTTATGAGCCAGCAGGATGCCGAAGCTTCATCATGTCCCTT
TGCATGGGGCGGCCCCGTACATGCTTACTTTGATATATATGTTGCAGCTG
TCATGAACACATATCGAAAGACATATTTGATGCTATTGGATGTCTTAATC
CGTCTTGCATCTCGAATGGGCGGCTCCATCCAGACAGATAACGTTATCAG
ATGGGAGAAGCAGGCTCACATCCTAATCTATGATATTGTCGCATCTATTC
CATACCACCTTACCAATAATCTGCACGCGTATCAGCAAGACATTCTCTCA
CTCAACAGTCCTCCAGGCGTTGGTCGCTCTGTGGGAGGCCTATTATTGTT
ACATCCTTTATTTGTACTCTCTACTTGCTCGGCAGTGCCACAGCCTATTC
AAAACCACGCTTTGAAGTGTCTTGCCTGGATTGGGCAACATATGGGGATC
GGACAAGGCATGCTTATGTCCAAGGGGTATACCAGCTTGCCTTTCCAGGA
AACGGCGGAGGGACATGTCCTGATTTGGGCAGGCATGCTACTACATCCTG
CCGAGAAGCAGACGCAGCTATAAATGGTAAACTACGGCGTTTCTCGTGCC
TGTGAGACCTGCAGGAAACGGCGGAAGAAGTGTGATGAAGGCCGCCCTGC
TTGTAGTCGCTGTCTTCAATCGGGGAGAATCTGCCTCGGGTACAGGAGCA
ATGACGAATTACGCTTCCGCCATTATGTAGTTCCTGCGAACAAGCCTGTC
CAATTGCTCTTCCCGCCCCAAAGCAGGATAGTGACCACGAATGATCCTGT
TGGTCTATTCCTTGACCAGTATGTTGTCTGTTCGAGAGATTCTCGAGTCT
CCCGCGGGTTCCTGGATGGTTTACCCTCGCTCCTCGCCAGCGTTCATCCC
TCTTCAGACCTCGTCCGGGCCGTCGAGATTGTCGCTTGGGCAACCCTGGG
CAATAAAATCTCTCGGCCGGATCTTTTAGCCAGGGCAAGAAGGCAGTATA
CTGGTCTACTATGCTCCTTCCAGGACTTGCTGCATTGCTGCCAGCTACGA
GCACCTACCGTGGAAGCATTGGTGATTGCTATCCTTCTCGGCCTTTATGA
GATTGTGAGCAGTGATGAGATTACTCAAGAGCAACAGAAGCATGTTGCCC
ATGTCCGAGGGGTCTGTGCTTTGCTGTTGAGCCCAAATTCTCCTTTTGAT
CTACTCTCAAGCACGCAGTTGTTTCAAGTGGCAAACCCTTTGCTCATTAA
GCGTGATCTCCAGGTTCAAGATAACCGCGGGGTTCTTTGTGCGCCCGCGT
CGAACCATGCTGTGCACAATTTGGATTCCATCCTGATAAAATGCCACCCC
CTTTTTGAGCATGCAAACACGCAGCTACAGGATCCATTAGCCTCATTTTA
CGAACTACAAAAAACCCTTGATCGTGCTCTTGCTATCGAACTTGCCTTCT
CGCAATGGGGTGCTACTCAGGATGTATCTTGGAAGGCTGATATAGTGGGC
TTTATGAGCCAGCAGGATGCCGAAGCTTCATCATGTCCCTTTGCATGGGG
CGGCCCCGTACATGCTTACTTTGATATATATGTTGCAGCTGTCATGAACA
CATATCGAAAGACATATTTGATGCTATTGGATGTCTTAATCCGTCTTGCA
TCTCGAATGGGCGGCTCCATCCAGACAGATAACGTTATCAGATGGGAGAA
GCAGGCTCACATCCTAATCTATGATATTGTCGCATCTATTCCATACCACC
TTACCAATAATCTGCACGCGTATCAGCAAGACATTCTCTCACTCAACAGT
CCTCCAGGCGTTGGTCGCTCTGTGGGAGGCCTATTATTGTTACATCCTTT
ATTTGTACTCTCTACTTGCTCGGCAGTGCCACAGCCTATTCAAAACCACG
CTTTGAAGTGTCTTGCCTGGATTGGGCAACATATGGGGATCGGACAAGGC
ATGCTTATGTCCAAGGGGTATACCAGCTTGCCTTTCCAGGAAACGGCGGA
GGGACATGTCCTGATTTGGGCAGGCATGCTACTACATCCTGCCGAGAAGC
AGACGCAGCTATAAATGGTAAACTACGGCGTTTCTCGTGCCTGTGAGACC
TGCAGGAAACGGCGGAAGAAGTGTGATGAAGGCCGCCCTGCTTGTAGTCG
CTGTCTTCAATCGGGGAGAATCTGCCTCGGGTACAGGAGCAATGACGAAT
TACGCTTCCGCCATTATGTAGTTCCTGCGAACAAGCCTGTCCAATTGCTC
TTCCCGCCCCAAAGCAGGATAGTGACCACGAATGATCCTGTTGGTCTATT
CCTTGACCAGTATGTTGTCTGTTCGAGAGATTCTCGAGTCTCCCGCGGGT
TCCTGGATGGTTTACCCTCGCTCCTCGCCAGCGTTCATCCCTCTTCAGAC
CTCGTCCGGGCCGTCGAGATTGTCGCTTGGGCAACCCTGGGCAATAAAAT
CTCTCGGCCGGATCTTTTAGCCAGGGCAAGAAGGCAGTATACTGGTCTAC
TATGCTCCTTCCAGGACTTGCTGCATTGCTGCCAGCTACGAGCACCTACC
GTGGAAGCATTGGTGATTGCTATCCTTCTCGGCCTTTATGAGATTGTGAG
CAGTGATGAGATTACTCAAGAGCAACAGAAGCATGTTGCCCATGTCCGAG
GGGTCTGTGCTTTGCTGTTGAGCCCAAATTCTCCTTTTGATCTACTCTCA
AGCACGCAGTTGTTTCAAGTGGCAAACCCTTTGCTCATTAAGCGTGATCT
CCAGGTTCAAGATAACCGCGGGGTTCTTTGTGCGCCCGCGTCGAACCATG
CTGTGCACAATTTGGATTCCATCCTGATAAAATGCCACCCCCTTTTTGAG
CATGCAAACACGCAGCTACAGGATCCATTAGCCTCATTTTACGAACTACA
AAAAACCCTTGATCGTGCTCTTGCTATCGAACTTGCCTTCTCGCAATGGG
GTGCTACTCAGGATGTATCTTGGAAGGCTGATATAGTGGGCTTTATGAGC
CAGCAGGATGCCGAAGCTTCATCATGTCCCTTTGCATGGGGCGGCCCCGT
ACATGCTTACTTTGATATATATGTTGCAGCTGTCATGAACACATATCGAA
AGACATATTTGATGCTATTGGATGTCTTAATCCGTCTTGCATCTCGAATG
GGCGGCTCCATCCAGACAGATAACGTTATCAGATGGGAGAAGCAGGCTCA
CATCCTAATCTATGATATTGTCGCATCTATTCCATACCACCTTACCAATA
ATCTGCACGCGTATCAGCAAGACATTCTCTCACTCAACAGTCCTCCAGGC
GTTGGTCGCTCTGTGGGAGGCCTATTATTGTTACATCCTTTATTTGTACT
CTCTACTTGCTCGGCAGTGCCACAGCCTATTCAAAACCACGCTTTGAAGT
GTCTTGCCTGGATTGGGCAACATATGGGGATCGGACAAGGCATGCTTATG
TCCAAGGGGTATACCAGCTTGCCTTTCCAGGAAACGGCGGAGGGACATGT
CCTGATTTGGGCAGGCATGCTACTACATCCTGCCGAGAAGCAGACGCAGC
TATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003594-T1.utr5p1 | KJC3_003594-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2377505..2379968 + |
|
