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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2560713..2561964+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003667-T1 ID=KJC3_003667-T1|Name=KJC3_003667-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1252bp|location=Sequence derived from alignment at ch3:2560713..2561964+ (Aspergillus niger KJC3)
TCCAGAATACATCATATGAAGTTATCGACAACTATTTATCTATCTAAGCC
AAAGGATCGACATCCATACCCTTCCTACCCAGAAAAGATTGAAAAATGGC
AGGCAGAAGAAACCGCGTTCAAGAAGTACTGGAATACCATCAGTGAACTT
GTGGTCCAAGAAGCATCCATCATAGCCTGCACACACAATCTAACCGGCAC
GATTATCATCAAAAGCAACTTTGGTGCGAACAGAAAAAAATTATCATTAT
CACAGACAAAGATAAACAGGTTCTTGAACCAGACATGCTCATACCCCTTA
TAACTCCAAACAAGCAGAAACTTATTCTAGGAACAATCAGAGGAGGTGAC
CAGCAACAACTCCCTCCTCTATCAATCACAGCATCTGAGGTCCCTGGGTA
CAACGAATTCGGATACCAGATGGGAAGATCGCTCTTTGACCGACTTCGTC
GTTCCCAATTTCCCTTTACACTAGTTTCTGAGCAACACCGTATGCACCCG
CGCCTCTCCAGATTTCCATCCGAGTTCACCTACAATGGAAGAATGACCAA
TGACCCGGTCGTTCACTCAGTTTCCGTTGGTCCTGAGTTGTCAGGTGCGC
TCCTTGATTAGATCAAGACCAAAGCACCAGGTGCCAACTTCAAAAGAGGT
ATGGAACTCATCGGTATCGATGTCACTGATGGAAAAGCTGTGGTTAATGG
AAAAACTCGCTCGCGTTCAAACATTGCCAATGTCACTGTCGTTATGGAGC
TCGTGGAGTTTCTGATTAGTCGCGATGCACTCAAGGGAAGAACTTCCGCT
ATCATCACGACGTATGCAGATCAGAGAAAAGAGTACGTCCGCAGCCTGAA
GAAGTTGTCGGAAAGGCTCAGTATCGCTTGGAAGGACATGATAAAAATAG
CCACGGTTGACTCCATGCAGGGCCACGAAGTGGATTTGGCCATATTGGAT
TGGGTTGTGGACTCAGGGGCGAAGTCTCATTTAGGCTTTGCCTCCGACAA
TCGCCGCACGAACGTCGCCCTCACCAGGGCAAGGGCATGTTTGATCGTGG
TCGCCAATGGAGCTATCCTCAACAACGACCGTCTGAGTGAGCGAAAGCCG
ACACACCTTCACCCGGAAGTCCTGGCGCATTGGAACAGTTTGTTCCTTAA
TGGTCTCGTTGTGGACGTCCGTGCTGGTCTGATGACAAGCAATGCCGATG
GTCAAGGAGAACTTTAATTCTAATAGACGAAGAATGGGAACCTTGCTGTG
GC back to topCoding sequence (CDS) from alignment at ch3:2560713..2561964+ >KJC3_003667-T1 ID=KJC3_003667-T1|Name=KJC3_003667-T1|organism=Aspergillus niger KJC3|type=CDS|length=567bp|location=Sequence derived from alignment at ch3:2560713..2561964+ (Aspergillus niger KJC3)
ATGGAACTCATCGGTATCGATGTCACTGATGGAAAAGCTGTGGTTAATGG
AAAAACTCGCTCGCGTTCAAACATTGCCAATGTCACTGTCGTTATGGAGC
TCGTGGAGTTTCTGATTAGTCGCGATGCACTCAAGGGAAGAACTTCCGCT
ATCATCACGACGTATGCAGATCAGAGAAAAGAGTACGTCCGCAGCCTGAA
GAAGTTGTCGGAAAGGCTCAGTATCGCTTGGAAGGACATGATAAAAATAG
CCACGGTTGACTCCATGCAGGGCCACGAAGTGGATTTGGCCATATTGGAT
TGGGTTGTGGACTCAGGGGCGAAGTCTCATTTAGGCTTTGCCTCCGACAA
TCGCCGCACGAACGTCGCCCTCACCAGGGCAAGGGCATGTTTGATCGTGG
TCGCCAATGGAGCTATCCTCAACAACGACCGTCTGAGTGAGCGAAAGCCG
ACACACCTTCACCCGGAAGTCCTGGCGCATTGGAACAGTTTGTTCCTTAA
TGGTCTCGTTGTGGACGTCCGTGCTGGTCTGATGACAAGCAATGCCGATG
GTCAAGGAGAACTTTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003667-T1.utr5p1 | KJC3_003667-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003667-T1.utr3p1 | KJC3_003667-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR041679 |
| DBxref | PFAM:PF13087 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2560713..2561964 + |
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