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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2562184..2564389- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003668-T2 ID=KJC3_003668-T2|Name=KJC3_003668-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2206bp|location=Sequence derived from alignment at ch3:2562184..2564389- (Aspergillus niger KJC3)
GCTTTTCCCATGCCGCTCCACATTTTCCTGAGACGCTCTTTGGCCCCCCA
TCTGTCAGTTTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCGCGGT
TCTATTCTCCCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCCATGG
ACAATAACGAAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGT
CGTAAGAAGCGGAATATGGGACGATCCGAGTGGAGGTATGTTGTGCATGC
CCCCGATCCGGGATGTTTGGGTTGAGCAATTGATTGTCTGACTTCCAGCT
AACCCAGAAAGTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCA
GCAGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTC
CTGTATATGCGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGC
CGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATA
CAAGGGCATGCAATTGTATGATTACGGTCCTTTGCGGTTTATTTTAAAAA
ATATCGGAGCTGTTACTAATTGTAGGTAGGAGCGAGACGGAAAAGACCAT
CGAAGGAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGG
CCAACGCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACC
GACAAGGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGT
CGAAGATGACGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGA
TTCGCGTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAG
CTGTGCGACTCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCT
GCCGCCTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCG
AGAAGGAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCG
AGCTACTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAA
CACGCCCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACG
ATGAGGACCAGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCT
GCATCAGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGA
TGCTGAAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGA
CCGTCAAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGT
ATTCCGGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGT
CGGAACGAATAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACC
CATCCTCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATC
ATCATCAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTT
CATGATGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGC
GCTGCGGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAG
ATCGCCATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGT
CTTCGACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCG
ACTTCGACAAGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATT
TACGATCGTATCTTCCGTGAGGAAGAAGAAACTCATGCGTATGTTTATCA
CTCCCCTGTTTTCGTTCGTCCTTGGAGTTATTGATTCAGAACTAATGATA
ATATCTTTCGTTTAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACT
CGCAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGA
CTAGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGA
GGCGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTC
CGAATGGGGGAGAAGAGGGAGGTTAGATAGATAACTGACGTGCTCTCGAC
AATGAAAGACTGATGTTAGTTATCTATAATACATGCAAGCCATTACCACC
CCACACGATCGCCTTAAGTAGCGGCCACACAAATCAGACTTCCCTCAATC
TACCCC back to topCoding sequence (CDS) from alignment at ch3:2562184..2564389- >KJC3_003668-T2 ID=KJC3_003668-T2|Name=KJC3_003668-T2|organism=Aspergillus niger KJC3|type=CDS|length=7416bp|location=Sequence derived from alignment at ch3:2562184..2564389- (Aspergillus niger KJC3)
TTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATTCC
TCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGCCT
GCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAGGT
GGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGAAG
AGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCTTTGC
GGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAACCGACCCGA
AGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCACGCT
GCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGACGATATCAT
TCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATGGGACATCC
TCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCGCATT
TACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCACCCCAGCAC
TTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGACCTGG
AGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGAGACC
GACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAGGATATCCG
CAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCAGTCCGCGC
AAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGGAAACCACC
GAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACGAGGC
CGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGCCATCAAAG
CCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACGCCTG
GCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAATAACTTCTT
CAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAAACGTCACA
TCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACGGCACCGAG
TGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCACCAGATCCG
CAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGATCCCC
AGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTCCCAAGGCT
CCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATAACCG
GAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAAGCATGCCG
ATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTATCTTCCGT
GAGGAAGAAGAAACTCATGCAAAGTCGGAATATGGTAGATAAGAGAGCCC
GGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAG
GAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAGGACATCGA
GAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATT
CGGGAACTGGATACAAGGGCATGCAATTATGCCGCTCCACATTTTCCTGA
GACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGCGCACTTCTCTG
CGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTACGCTCGCTAAA
GGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACCTCCGCAAGCCGG
AGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACGATCCGAGT
GGAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGGAA
TTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGT
GCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAG
AGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGA
GAAGAGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCT
TTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAACCGAC
CCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCA
CGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGACGATA
TCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATGGGAC
ATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCG
CATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCACCCCA
GCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGAC
CTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGA
GACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAGGATA
TCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCAGTCC
GCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGGAAAC
CACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACG
AGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGCCATC
AAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACG
CCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAATAACT
TCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAAACGT
CACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACGGCAC
CGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCACCAGA
TCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGAT
CCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTCCCAA
GGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATA
ACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAAGCAT
GCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTATCTT
CCGTGAGGAAGAAGAAACTCATGCAAAGTCGGAATATGGTAGATAAGAGA
GCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGAACGG
AGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAGGACA
TCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGA
TATTCGGGAACTGGATACAAGGGCATGCAATTATGCCGCTCCACATTTTC
CTGAGACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGCGCACTTC
TCTGCGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTACGCTCGC
TAAAGGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACCTCCGCAAG
CCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACGATCC
GAGTGGAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGA
GGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCT
CGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTG
GCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGG
GGGAGAAGAGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGGAGAG
CTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAAC
CGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTG
TCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGAC
GATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATG
GGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACT
CTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCAC
CCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGG
TGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGG
AGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAG
GATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCA
GTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGG
AAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAA
GACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGC
CATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCC
AACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAAT
AACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAA
ACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACG
GCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCAC
CAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTG
TGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTC
CCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCG
TATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAA
GCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTA
TCTTCCGTGAGGAAGAAGAAACTCATGCAAAGTCGGAATATGGTAGATAA
GAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGA
ACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAG
GACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCT
GGGATATTCGGGAACTGGATACAAGGGCATGCAATTATGCCGCTCCACAT
TTTCCTGAGACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGCGCA
CTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTACGC
TCGCTAAAGGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACCTCCG
CAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACG
ATCCGAGTGGAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGC
AAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTA
GTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGC
GTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGA
ATGGGGGAGAAGAGGGAGGTTAGGAGCGAGACGGAAAAGACCATCGAAGG
AGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACG
CAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAG
GGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGA
TGACGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCG
TATGGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGC
GACTCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCC
TCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGG
AGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTAC
TGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCC
CGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGG
ACCAGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCA
GAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGA
AAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCA
AAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCG
GCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAAC
GAATAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCT
CAAAACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATC
AACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGAT
GCACCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCG
GCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCC
ATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGA
CTCGTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCG
ACAAGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGAT
CGTATCTTCCGTGAGGAAGAAGAAACTCATGCAAAGTCGGAATATGGTAG
ATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATC
GAGAACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAA
GGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGC
TGCTGGGATATTCGGGAACTGGATACAAGGGCATGCAATTATGCCGCTCC
ACATTTTCCTGAGACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCG
CGCACTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCT
ACGCTCGCTAAAGGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACC
TCCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGG
GACGATCCGAGTGGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031119 | tRNA pseudouridine synthesis |
| GO:0001522 | pseudouridine synthesis |
| GO:0009451 | RNA modification |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009982 | pseudouridine synthase activity |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003668-T2.utr3p1 | KJC3_003668-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003668-T2.utr5p1 | KJC3_003668-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR041708 |
| DBxref | InterPro:IPR020095 |
| DBxref | InterPro:IPR020097 |
| DBxref | InterPro:IPR001406 |
| DBxref | PFAM:PF01416 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2562184..2564389 - |
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