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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2564491..2566329+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003669-T1 ID=KJC3_003669-T1|Name=KJC3_003669-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1839bp|location=Sequence derived from alignment at ch3:2564491..2566329+ (Aspergillus niger KJC3)
CTGCATGTATGCCTGAGGTATCAACTACATCCGCCGGCTTCATTCATTCA
AACCTCATCTTCTCTTTCATCTCTCGCCAGTCAATCCTCCCACCCTCCCT
GCGCGATAACTGCCGACCTTATACATACTATATTCGAGATCTTGTTATTT
CTGTTCCACCATCAGCTCTCCGACAAAGCATGGTGAGCTTGCAGCGCCGA
GCTTAACACTGGAAGACAAGAAGGACATTTGCGCGGGTTGCGCCGACAGA
ATCTCCAGCGTGACCAACACCTCATCATTTTCTCTTTGTATTATATTCCG
CACTCCTAAACAACCTCTGTAACTACACCAGCTATCATGGATCTCGCAAA
CACCCTTATTCGCAGCGTCGTGCGCGCCTTCTACGAGACCCGCCACATCC
TCGTAGTAGATGCGCTCTTCATCCACTCCGTGTACGTCCCGCACCAATAT
CATCGCATCGCAACAGACACTCCATACTAACCAGATGATTCTATAGTCTG
CACGCAGAAGATCTCGCATTTCTTCTAGGCATGCAACAAAAAGACTTACG
GAAACTCTGCGCCAAGTTGCGCGAAGATCGGCTCATCTCCGTGTAAGCTA
CATCTACACCTACACCAGTGTCACCACGAAGGAACCACCCTCACTAACAT
CCAACCCAAAAAAAACAGGAGCACGCGCGCTGAAATTCGCGATGGCTCAA
CACGTCCCGTTAACCGCGAATACTACTACATCCCACTGCACCCCGTCGTC
GACGCGATCAAATACAAAGTCTCGAAACTCACCTCCACAATAAAAGCACA
ATACACACCAAGCCAAGAGCGCAAAGAATACATCTGCCTCCGCTGCGGCT
CCGAATGGACCGAACTCGACGTCCTCAGTCTCTACAGCGAAGAAGGCTTC
GAATGCCAAAACTGCGGGGCGATCCTCGAACGCACCGAGGACGTCAAAGG
CGCCGAAGGCATAGACAGAACCGGACATGAGAAAAACAGCAAACTAATGA
ACCAACTGGACACGATGCTCAAACTCCTCAAACAAATCGACTCCGTCGAA
ATCCCCCCCAACGACTTCGACACGGCCTGGGACCATAAAATCGACGTCGT
CCGGAACCAGCAAACCCACCCCACACGAGCGGCAGTCATCGTGCCCTCGA
AGCAACAACAAGAAGCCGTGCGCGGCAACACCAAGACCGACGCCACCGCT
CTCGAAATTTCCCTCACCTCTAGCGAAGAGAAATCCGCCGCCGAACAAGC
CGCCGAAGCGGCGCGCAAAGCGGCAGTCGAGAAACAGAATGCCCTGCCAG
TCTGGCACACCCACTCCACGGTGTCCACGTCCGCGGGCAACGGGCCGCAT
GTTAAATCTGAGACAGACATCGACATCAAACCGGAGATCAAGCCCGAAGA
CGAAGACCGGAAACCGGAAATCAACGGTCTGGATGACAAGGTCGCGGCTT
ACTATGCTGAAATGGAGCGTGAGAAGGCCCTCCAGGCGCAAGAAGATGCA
AGCAGTGCAGAGGAAGATTCGGATGAGTTTGATGAGTTCGAGGATGTGGG
TGTGTCAGCTAGTGATGCGGCTGCTTCTCCTGCTGTCAATGCTACGCCTA
CGCCTGGCGGGGGCCCTACTAGTGCGCCGATGCAGCAGACTTCGACTACG
TCTTCGGTTGGTATCAAGCGGGAGTTAGATACGGATTACTCGAGCGTCAG
TACATCTCAGACGGCAGCGGCGACGCCAGCTACGGGCGGAGAGGAAGGGC
CGACGGCGAAGAAGATCAAGACTGAACCGGAGGTTAAGAAAGAAGAAGAG
TCCGACGAGGACGATGATGAGGAGTTTGAAGATGTGTAG back to topCoding sequence (CDS) from alignment at ch3:2564491..2566329+ >KJC3_003669-T1 ID=KJC3_003669-T1|Name=KJC3_003669-T1|organism=Aspergillus niger KJC3|type=CDS|length=4086bp|location=Sequence derived from alignment at ch3:2564491..2566329+ (Aspergillus niger KJC3)
ATGGATCTCGCAAACACCCTTATTCGCAGCGTCGTGCGCGCCTTCTACGA
GACCCGCCACATCCTCGTAGTAGATGCGCTCTTCATCCACTCCGTTCTGC
ACGCAGAAGATCTCGCATTTCTTCTAGGCATGCAACAAAAAGACTTACGG
AAACTCTGCGCCAAGTTGCGCGAAGATCGGCTCATCTCCGTGAGCACGCG
CGCTGAAATTCGCGATGGCTCAACACGTCCCGTTAACCGCGAATACTACT
ACATCCCACTGCACCCCGTCGTCGACGCGATCAAATACAAAGTCTCGAAA
CTCACCTCCACAATAAAAGCACAATACACACCAAGCCAAGAGCGCAAAGA
ATACATCTGCCTCCGCTGCGGCTCCGAATGGACCGAACTCGACGTCCTCA
GTCTCTACAGCGAAGAAGGCTTCGAATGCCAAAACTGCGGGGCGATCCTC
GAACGCACCGAGGACGTCAAAGGCGCCGAAGGCATAGACAGAACCGGACA
TGAGAAAAACAGCAAACTAATGAACCAACTGGACACGATGCTCAAACTCC
TCAAACAAATCGACTCCGTCGAAATCCCCCCCAACGACTTCGACACGGCC
TGGGACCATAAAATCGACGTCGTCCGGAACCAGCAAACCCACCCCACACG
AGCGGCAGTCATCGTGCCCTCGAAGCAACAACAAGAAGCCGTGCGCGGCA
ACACCAAGACCGACGCCACCGCTCTCGAAATTTCCCTCACCTCTAGCGAA
GAGAAATCCGCCGCCGAACAAGCCGCCGAAGCGGCGCGCAAAGCGGCAGT
CGAGAAACAGAATGCCCTGCCAGTCTGGCACACCCACTCCACGGTGTCCA
CGTCCGCGGGCAACGGGCCGCATGTTAAATCTGAGACAGACATCGACATC
AAACCGGAGATCAAGCCCGAAGACGAAGACCGGAAACCGGAAATCAACGG
TCTGGATGACAAGGTCGCGGCTTACTATGCTGAAATGGAGCGTGAGAAGG
CCCTCCAGGCGCAAGAAGATGCAAGCAGTGCAGAGGAAGATTCGGATGAG
TTTGATGAGTTCGAGGATGTGGGTGTGTCAGCTAGTGATGCGGCTGCTTC
TCCTGCTGTCAATGCTACGCCTACGCCTGGCGGGGGCCCTACTAGTGCGC
CGATGCAGCAGACTTCGACTACGTCTTCGGTTGGTATCAAGCGGGAGTTA
GATACGGATTACTCGAGCGTCAGTACATCTCAGACGGCAGCGGCGACGCC
AGCTACGGGCGGAGAGGAAGGGCCGACGGCGAAGAAGATCAAGACTGAAC
CGGAGGTTAAGAAAGAAGAAGAGTCCGACGAGGACGATGATGAGGAGTTT
GAAGATGTGTAGATGGATCTCGCAAACACCCTTATTCGCAGCGTCGTGCG
CGCCTTCTACGAGACCCGCCACATCCTCGTAGTAGATGCGCTCTTCATCC
ACTCCGTTCTGCACGCAGAAGATCTCGCATTTCTTCTAGGCATGCAACAA
AAAGACTTACGGAAACTCTGCGCCAAGTTGCGCGAAGATCGGCTCATCTC
CGTGAGCACGCGCGCTGAAATTCGCGATGGCTCAACACGTCCCGTTAACC
GCGAATACTACTACATCCCACTGCACCCCGTCGTCGACGCGATCAAATAC
AAAGTCTCGAAACTCACCTCCACAATAAAAGCACAATACACACCAAGCCA
AGAGCGCAAAGAATACATCTGCCTCCGCTGCGGCTCCGAATGGACCGAAC
TCGACGTCCTCAGTCTCTACAGCGAAGAAGGCTTCGAATGCCAAAACTGC
GGGGCGATCCTCGAACGCACCGAGGACGTCAAAGGCGCCGAAGGCATAGA
CAGAACCGGACATGAGAAAAACAGCAAACTAATGAACCAACTGGACACGA
TGCTCAAACTCCTCAAACAAATCGACTCCGTCGAAATCCCCCCCAACGAC
TTCGACACGGCCTGGGACCATAAAATCGACGTCGTCCGGAACCAGCAAAC
CCACCCCACACGAGCGGCAGTCATCGTGCCCTCGAAGCAACAACAAGAAG
CCGTGCGCGGCAACACCAAGACCGACGCCACCGCTCTCGAAATTTCCCTC
ACCTCTAGCGAAGAGAAATCCGCCGCCGAACAAGCCGCCGAAGCGGCGCG
CAAAGCGGCAGTCGAGAAACAGAATGCCCTGCCAGTCTGGCACACCCACT
CCACGGTGTCCACGTCCGCGGGCAACGGGCCGCATGTTAAATCTGAGACA
GACATCGACATCAAACCGGAGATCAAGCCCGAAGACGAAGACCGGAAACC
GGAAATCAACGGTCTGGATGACAAGGTCGCGGCTTACTATGCTGAAATGG
AGCGTGAGAAGGCCCTCCAGGCGCAAGAAGATGCAAGCAGTGCAGAGGAA
GATTCGGATGAGTTTGATGAGTTCGAGGATGTGGGTGTGTCAGCTAGTGA
TGCGGCTGCTTCTCCTGCTGTCAATGCTACGCCTACGCCTGGCGGGGGCC
CTACTAGTGCGCCGATGCAGCAGACTTCGACTACGTCTTCGGTTGGTATC
AAGCGGGAGTTAGATACGGATTACTCGAGCGTCAGTACATCTCAGACGGC
AGCGGCGACGCCAGCTACGGGCGGAGAGGAAGGGCCGACGGCGAAGAAGA
TCAAGACTGAACCGGAGGTTAAGAAAGAAGAAGAGTCCGACGAGGACGAT
GATGAGGAGTTTGAAGATGTGTAGATGGATCTCGCAAACACCCTTATTCG
CAGCGTCGTGCGCGCCTTCTACGAGACCCGCCACATCCTCGTAGTAGATG
CGCTCTTCATCCACTCCGTTCTGCACGCAGAAGATCTCGCATTTCTTCTA
GGCATGCAACAAAAAGACTTACGGAAACTCTGCGCCAAGTTGCGCGAAGA
TCGGCTCATCTCCGTGAGCACGCGCGCTGAAATTCGCGATGGCTCAACAC
GTCCCGTTAACCGCGAATACTACTACATCCCACTGCACCCCGTCGTCGAC
GCGATCAAATACAAAGTCTCGAAACTCACCTCCACAATAAAAGCACAATA
CACACCAAGCCAAGAGCGCAAAGAATACATCTGCCTCCGCTGCGGCTCCG
AATGGACCGAACTCGACGTCCTCAGTCTCTACAGCGAAGAAGGCTTCGAA
TGCCAAAACTGCGGGGCGATCCTCGAACGCACCGAGGACGTCAAAGGCGC
CGAAGGCATAGACAGAACCGGACATGAGAAAAACAGCAAACTAATGAACC
AACTGGACACGATGCTCAAACTCCTCAAACAAATCGACTCCGTCGAAATC
CCCCCCAACGACTTCGACACGGCCTGGGACCATAAAATCGACGTCGTCCG
GAACCAGCAAACCCACCCCACACGAGCGGCAGTCATCGTGCCCTCGAAGC
AACAACAAGAAGCCGTGCGCGGCAACACCAAGACCGACGCCACCGCTCTC
GAAATTTCCCTCACCTCTAGCGAAGAGAAATCCGCCGCCGAACAAGCCGC
CGAAGCGGCGCGCAAAGCGGCAGTCGAGAAACAGAATGCCCTGCCAGTCT
GGCACACCCACTCCACGGTGTCCACGTCCGCGGGCAACGGGCCGCATGTT
AAATCTGAGACAGACATCGACATCAAACCGGAGATCAAGCCCGAAGACGA
AGACCGGAAACCGGAAATCAACGGTCTGGATGACAAGGTCGCGGCTTACT
ATGCTGAAATGGAGCGTGAGAAGGCCCTCCAGGCGCAAGAAGATGCAAGC
AGTGCAGAGGAAGATTCGGATGAGTTTGATGAGTTCGAGGATGTGGGTGT
GTCAGCTAGTGATGCGGCTGCTTCTCCTGCTGTCAATGCTACGCCTACGC
CTGGCGGGGGCCCTACTAGTGCGCCGATGCAGCAGACTTCGACTACGTCT
TCGGTTGGTATCAAGCGGGAGTTAGATACGGATTACTCGAGCGTCAGTAC
ATCTCAGACGGCAGCGGCGACGCCAGCTACGGGCGGAGAGGAAGGGCCGA
CGGCGAAGAAGATCAAGACTGAACCGGAGGTTAAGAAAGAAGAAGAGTCC
GACGAGGACGATGATGAGGAGTTTGAAGATGTGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003669-T1.utr5p1 | KJC3_003669-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR017919 |
| DBxref | InterPro:IPR024550 |
| DBxref | InterPro:IPR002853 |
| DBxref | PFAM:PF02002 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2564491..2566329 + |
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