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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:2584223..2586482- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003675-T1 ID=KJC3_003675-T1|Name=KJC3_003675-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2260bp|location=Sequence derived from alignment at ch3:2584223..2586482- (Aspergillus niger KJC3)
CCAAGCGCTGCTTCTGCTCCTGCTGCATGCACGACATGGTCGATTGGCTC
TAGCTGGGGATCTTATCACCAGGTTGAGCATCGGCTAGCTGTCATTGCTT
CCTCCCATTTGCCTCCCCTGTCATGCTAGCAACTGTCTCTCCGCTTCCTC
CGTCATCCTTTCTTTCTTCCCTGTAAACCTACCTGCGTTCGGCAGTGCGC
TTTGTCGCAATGGCTTTTTACGACGACCCTGGGAACGATTCCCAGCCATT
TGGGAGGCCCCCTAAATCCTACGAAGGAGGGATTGCTGGGCCGCGACGAC
CGAGTACGTGTGATCCGATCCTTTGTCCCGATGCGTTCACATTTGTTTAC
CCCTCTACCTTCGTTTTTCTTTCGGCGAAGTTAACCGTCGCTTGTAGGAC
TCGTGACGGACTATGGATCATCAATGGTGCAATGGATACGCACACGGAAA
CCCCGCTATAAAGGAGGTCATCAGATTGAGGTGGAAAGGCCTAGTGCAAG
CTATGTTGTGGATGTAAGTGCGACAGATTTCCGCGCACATTCTGATACAA
CTCTTCGATTAACACGAGCGGAATTTTCTTTGTTAGATGCTCCCCCCTCT
TGCACGAGTCCATTCTCCGGCGGATACTATACCAGTGCGGCATTTACATC
AGTCGATTGGAAAATCGAAGAAACCGATCACTGTCGTACGATGGACACCG
GAAGGAAGACGCCTGCTAACGGGAGGCCACACGGGCGAATTCATGCTATG
GAATGGAACTGCCTTCAACTTCGAAACTGTCATGGATGTGGGTGTCGCTC
GGATACATTAATCCCCTAGCCGAAGATTTTTGTTGCTGATGGTTGAATAG
GCACATTATGATCAGCTACAAGCTGGAGTAACCTCCTTAGCTTGGTCCCA
CAGTCATGACTGGTTAATATCCGGAGGACAGAAGGGTGACGTGAAGTATT
GGCGACCTAACTTTAACAACGTCGAGACGATCGATGACGCACATCACGAT
GCTGTACGCGATTTGGCATGGTCACCAAGTGATACTAAATTCCTCTCCGC
ATCCGACGACACAACGCTGAAGATATTCGATTTCACCGCGAGAACTTGCG
ATACCGTTCTCACCGGTCACAACTGGGATGTCAAATCCTGCGACTGGCAT
CCCACCAAAGGTCTCCTTGTCTCTGGGTCCAAAGACCATCAGGTCAAGTT
CTGGGATCCGCGCACAGCAAGATGCTTGACAACGCTCCATAGCCACAAGA
ATACCGTCACAGCGACGAGGTTTTCCCGCGTAAACAATAACCTTCTAGCT
ACATCCTCTCGGGATCAAACGGCGAGAGTTTTCGACTTGCGCATGATGCG
AGATATTTGTATCCTCCGAGGCCATGAGAAGCCCGTCTCCTCTCTAACAT
GGCACCCGATTCACAGCTCTCTCATATCTACAGGTAGTGAGGACGGGTCT
CTATATCACTATTTGCTTGATGAACCAAACCTGCCCTCCGGGCAGATCCC
TACAATTGCGCCATATGACAGCAACGACCCGGCTAACACGCCGGCGCAGG
TGATCTACCCTGCCCACAAGGTACAGTACGCGCACGGTGCCACCATCTGG
TCCCTCGACTGGCATCCTCTGGGTCATATTCTTGCATCCGGATCTAAAGA
TAACTTCACACGGTTCTGGTCCCGTGCCAGACCCGGAGAGACTAGTTACA
TGAAGGATAGGTTCCACATCGGAGAAGAGGCGGCGGAGGCCCAGGGTACA
TGGAGCCGGGGCTTCGGACGGCGGCAGATGCGTGAAGAGGAAGAACAAGA
ACTTCAGGATGAGGCAGAGAGCTTGGTCGATCAGAAGAAACCGGCCGGAA
TGTCATCTCTTCCCGGAATTCAATTCGCACCACCCGGCGCCGCACCACAG
CCAGACGGGATGGGTTCGATACTGCCAGGAATTGGGGCTCCCCAGCCCCC
ACCCCAGCCGGGGTTTTCCACTTCAATGCCGCAAATGGATCCTGGGCGTC
TAGCAGCTCTTTTGTCCAATCAACCGCCCCCTCAGCCGAACAATTTCCCT
CCCACAACGGGACTGCCAGGGTTTCCCATGCACCCTGCTATGTCGGGGAC
ACCTCCGGTGAACGTTGACCTGGCAGAACTGCAGAAGCAGCTTCTTTCTC
AAGGAATCTCGCTGCCCCAGAACTTTCCGCCGCCAAATTTTCCTGGCATG
CCCGGGGGCCTTCCCGGCCTGCAAGGGAGCAGTACGCCCGATCACGGATA
TGGAAGATGA back to topCoding sequence (CDS) from alignment at ch3:2584223..2586482- >KJC3_003675-T1 ID=KJC3_003675-T1|Name=KJC3_003675-T1|organism=Aspergillus niger KJC3|type=CDS|length=7284bp|location=Sequence derived from alignment at ch3:2584223..2586482- (Aspergillus niger KJC3)
GCACATTATGATCAGCTACAAGCTGGAGTAACCTCCTTAGCTTGGTCCCA
CAGTCATGACTGGTTAATATCCGGAGGACAGAAGGGTGACGTGAAGTATT
GGCGACCTAACTTTAACAACGTCGAGACGATCGATGACGCACATCACGAT
GCTGTACGCGATTTGGCATGGTCACCAAGTGATACTAAATTCCTCTCCGC
ATCCGACGACACAACGCTGAAGATATTCGATTTCACCGCGAGAACTTGCG
ATACCGTTCTCACCGGTCACAACTGGGATGTCAAATCCTGCGACTGGCAT
CCCACCAAAGGTCTCCTTGTCTCTGGGTCCAAAGACCATCAGGTCAAGTT
CTGGGATCCGCGCACAGCAAGATGCTTGACAACGCTCCATAGCCACAAGA
ATACCGTCACAGCGACGAGGTTTTCCCGCGTAAACAATAACCTTCTAGCT
ACATCCTCTCGGGATCAAACGGCGAGAGTTTTCGACTTGCGCATGATGCG
AGATATTTGTATCCTCCGAGGCCATGAGAAGCCCGTCTCCTCTCTAACAT
GGCACCCGATTCACAGCTCTCTCATATCTACAGGTAGTGAGGACGGGTCT
CTATATCACTATTTGCTTGATGAACCAAACCTGCCCTCCGGGCAGATCCC
TACAATTGCGCCATATGACAGCAACGACCCGGCTAACACGCCGGCGCAGG
TGATCTACCCTGCCCACAAGGTACAGTACGCGCACGGTGCCACCATCTGG
TCCCTCGACTGGCATCCTCTGGGTCATATTCTTGCATCCGGATCTAAAGA
TAACTTCACACGGTTCTGGTCCCGTGCCAGACCCGGAGAGACTAGTTACA
TGAAGGATAGGTTCCACATCGGAGAAGAGGCGGCGGAGGCCCAGGGTACA
TGGAGCCGGGGCTTCGGACGGCGGCAGATGCGTGAAGAGGAAGAACAAGA
ACTTCAGGATGAGGCAGAGAGCTTGGTCGATCAGAAGAAACCGGCCGGAA
TGTCATCTCTTCCCGGAATTCAATTCGCACCACCCGGCGCCGCACCACAG
CCAGACGGGATGGGTTCGATACTGCCAGGAATTGGGGCTCCCCAGCCCCC
ACCCCAGCCGGGGTTTTCCACTTCAATGCCGCAAATGGATCCTGGGCGTC
TAGCAGCTCTTTTGTCCAATCAACCGCCCCCTCAGCCGAACAATTTCCCT
CCCACAACGGGACTGCCAGGGTTTCCCATGCACCCTGCTATGTCGGGGAC
ACCTCCGGTGAACGTTGACCTGGCAGAACTGCAGAAGCAGCTTCTTTCTC
AAGGAATCTCGCTGCCCCAGAACTTTCCGCCGCCAAATTTTCCTGGCATG
CCCGGGGGCCTTCCCGGCCTGCAAGGGAGCAGTACGCCCGATCACGGATA
TGGAAGATGAATGCTCCCCCCTCTTGCACGAGTCCATTCTCCGGCGGATA
CTATACCAGTGCGGCATTTACATCAGTCGATTGGAAAATCGAAGAAACCG
ATCACTGTCGTACGATGGACACCGGAAGGAAGACGCCTGCTAACGGGAGG
CCACACGGGCGAATTCATGCTATGGAATGGAACTGCCTTCAACTTCGAAA
CTGTCATGGATGACTCGTGACGGACTATGGATCATCAATGGTGCAATGGA
TACGCACACGGAAACCCCGCTATAAAGGAGGTCATCAGATTGAGGTGGAA
AGGCCTAGTGCAAGCTATGTTGTGGATATGGCTTTTTACGACGACCCTGG
GAACGATTCCCAGCCATTTGGGAGGCCCCCTAAATCCTACGAAGGAGGGA
TTGCTGGGCCGCGACGACCGAGCACATTATGATCAGCTACAAGCTGGAGT
AACCTCCTTAGCTTGGTCCCACAGTCATGACTGGTTAATATCCGGAGGAC
AGAAGGGTGACGTGAAGTATTGGCGACCTAACTTTAACAACGTCGAGACG
ATCGATGACGCACATCACGATGCTGTACGCGATTTGGCATGGTCACCAAG
TGATACTAAATTCCTCTCCGCATCCGACGACACAACGCTGAAGATATTCG
ATTTCACCGCGAGAACTTGCGATACCGTTCTCACCGGTCACAACTGGGAT
GTCAAATCCTGCGACTGGCATCCCACCAAAGGTCTCCTTGTCTCTGGGTC
CAAAGACCATCAGGTCAAGTTCTGGGATCCGCGCACAGCAAGATGCTTGA
CAACGCTCCATAGCCACAAGAATACCGTCACAGCGACGAGGTTTTCCCGC
GTAAACAATAACCTTCTAGCTACATCCTCTCGGGATCAAACGGCGAGAGT
TTTCGACTTGCGCATGATGCGAGATATTTGTATCCTCCGAGGCCATGAGA
AGCCCGTCTCCTCTCTAACATGGCACCCGATTCACAGCTCTCTCATATCT
ACAGGTAGTGAGGACGGGTCTCTATATCACTATTTGCTTGATGAACCAAA
CCTGCCCTCCGGGCAGATCCCTACAATTGCGCCATATGACAGCAACGACC
CGGCTAACACGCCGGCGCAGGTGATCTACCCTGCCCACAAGGTACAGTAC
GCGCACGGTGCCACCATCTGGTCCCTCGACTGGCATCCTCTGGGTCATAT
TCTTGCATCCGGATCTAAAGATAACTTCACACGGTTCTGGTCCCGTGCCA
GACCCGGAGAGACTAGTTACATGAAGGATAGGTTCCACATCGGAGAAGAG
GCGGCGGAGGCCCAGGGTACATGGAGCCGGGGCTTCGGACGGCGGCAGAT
GCGTGAAGAGGAAGAACAAGAACTTCAGGATGAGGCAGAGAGCTTGGTCG
ATCAGAAGAAACCGGCCGGAATGTCATCTCTTCCCGGAATTCAATTCGCA
CCACCCGGCGCCGCACCACAGCCAGACGGGATGGGTTCGATACTGCCAGG
AATTGGGGCTCCCCAGCCCCCACCCCAGCCGGGGTTTTCCACTTCAATGC
CGCAAATGGATCCTGGGCGTCTAGCAGCTCTTTTGTCCAATCAACCGCCC
CCTCAGCCGAACAATTTCCCTCCCACAACGGGACTGCCAGGGTTTCCCAT
GCACCCTGCTATGTCGGGGACACCTCCGGTGAACGTTGACCTGGCAGAAC
TGCAGAAGCAGCTTCTTTCTCAAGGAATCTCGCTGCCCCAGAACTTTCCG
CCGCCAAATTTTCCTGGCATGCCCGGGGGCCTTCCCGGCCTGCAAGGGAG
CAGTACGCCCGATCACGGATATGGAAGATGAATGCTCCCCCCTCTTGCAC
GAGTCCATTCTCCGGCGGATACTATACCAGTGCGGCATTTACATCAGTCG
ATTGGAAAATCGAAGAAACCGATCACTGTCGTACGATGGACACCGGAAGG
AAGACGCCTGCTAACGGGAGGCCACACGGGCGAATTCATGCTATGGAATG
GAACTGCCTTCAACTTCGAAACTGTCATGGATGACTCGTGACGGACTATG
GATCATCAATGGTGCAATGGATACGCACACGGAAACCCCGCTATAAAGGA
GGTCATCAGATTGAGGTGGAAAGGCCTAGTGCAAGCTATGTTGTGGATAT
GGCTTTTTACGACGACCCTGGGAACGATTCCCAGCCATTTGGGAGGCCCC
CTAAATCCTACGAAGGAGGGATTGCTGGGCCGCGACGACCGAGCACATTA
TGATCAGCTACAAGCTGGAGTAACCTCCTTAGCTTGGTCCCACAGTCATG
ACTGGTTAATATCCGGAGGACAGAAGGGTGACGTGAAGTATTGGCGACCT
AACTTTAACAACGTCGAGACGATCGATGACGCACATCACGATGCTGTACG
CGATTTGGCATGGTCACCAAGTGATACTAAATTCCTCTCCGCATCCGACG
ACACAACGCTGAAGATATTCGATTTCACCGCGAGAACTTGCGATACCGTT
CTCACCGGTCACAACTGGGATGTCAAATCCTGCGACTGGCATCCCACCAA
AGGTCTCCTTGTCTCTGGGTCCAAAGACCATCAGGTCAAGTTCTGGGATC
CGCGCACAGCAAGATGCTTGACAACGCTCCATAGCCACAAGAATACCGTC
ACAGCGACGAGGTTTTCCCGCGTAAACAATAACCTTCTAGCTACATCCTC
TCGGGATCAAACGGCGAGAGTTTTCGACTTGCGCATGATGCGAGATATTT
GTATCCTCCGAGGCCATGAGAAGCCCGTCTCCTCTCTAACATGGCACCCG
ATTCACAGCTCTCTCATATCTACAGGTAGTGAGGACGGGTCTCTATATCA
CTATTTGCTTGATGAACCAAACCTGCCCTCCGGGCAGATCCCTACAATTG
CGCCATATGACAGCAACGACCCGGCTAACACGCCGGCGCAGGTGATCTAC
CCTGCCCACAAGGTACAGTACGCGCACGGTGCCACCATCTGGTCCCTCGA
CTGGCATCCTCTGGGTCATATTCTTGCATCCGGATCTAAAGATAACTTCA
CACGGTTCTGGTCCCGTGCCAGACCCGGAGAGACTAGTTACATGAAGGAT
AGGTTCCACATCGGAGAAGAGGCGGCGGAGGCCCAGGGTACATGGAGCCG
GGGCTTCGGACGGCGGCAGATGCGTGAAGAGGAAGAACAAGAACTTCAGG
ATGAGGCAGAGAGCTTGGTCGATCAGAAGAAACCGGCCGGAATGTCATCT
CTTCCCGGAATTCAATTCGCACCACCCGGCGCCGCACCACAGCCAGACGG
GATGGGTTCGATACTGCCAGGAATTGGGGCTCCCCAGCCCCCACCCCAGC
CGGGGTTTTCCACTTCAATGCCGCAAATGGATCCTGGGCGTCTAGCAGCT
CTTTTGTCCAATCAACCGCCCCCTCAGCCGAACAATTTCCCTCCCACAAC
GGGACTGCCAGGGTTTCCCATGCACCCTGCTATGTCGGGGACACCTCCGG
TGAACGTTGACCTGGCAGAACTGCAGAAGCAGCTTCTTTCTCAAGGAATC
TCGCTGCCCCAGAACTTTCCGCCGCCAAATTTTCCTGGCATGCCCGGGGG
CCTTCCCGGCCTGCAAGGGAGCAGTACGCCCGATCACGGATATGGAAGAT
GAATGCTCCCCCCTCTTGCACGAGTCCATTCTCCGGCGGATACTATACCA
GTGCGGCATTTACATCAGTCGATTGGAAAATCGAAGAAACCGATCACTGT
CGTACGATGGACACCGGAAGGAAGACGCCTGCTAACGGGAGGCCACACGG
GCGAATTCATGCTATGGAATGGAACTGCCTTCAACTTCGAAACTGTCATG
GATGACTCGTGACGGACTATGGATCATCAATGGTGCAATGGATACGCACA
CGGAAACCCCGCTATAAAGGAGGTCATCAGATTGAGGTGGAAAGGCCTAG
TGCAAGCTATGTTGTGGATATGGCTTTTTACGACGACCCTGGGAACGATT
CCCAGCCATTTGGGAGGCCCCCTAAATCCTACGAAGGAGGGATTGCTGGG
CCGCGACGACCGAGCACATTATGATCAGCTACAAGCTGGAGTAACCTCCT
TAGCTTGGTCCCACAGTCATGACTGGTTAATATCCGGAGGACAGAAGGGT
GACGTGAAGTATTGGCGACCTAACTTTAACAACGTCGAGACGATCGATGA
CGCACATCACGATGCTGTACGCGATTTGGCATGGTCACCAAGTGATACTA
AATTCCTCTCCGCATCCGACGACACAACGCTGAAGATATTCGATTTCACC
GCGAGAACTTGCGATACCGTTCTCACCGGTCACAACTGGGATGTCAAATC
CTGCGACTGGCATCCCACCAAAGGTCTCCTTGTCTCTGGGTCCAAAGACC
ATCAGGTCAAGTTCTGGGATCCGCGCACAGCAAGATGCTTGACAACGCTC
CATAGCCACAAGAATACCGTCACAGCGACGAGGTTTTCCCGCGTAAACAA
TAACCTTCTAGCTACATCCTCTCGGGATCAAACGGCGAGAGTTTTCGACT
TGCGCATGATGCGAGATATTTGTATCCTCCGAGGCCATGAGAAGCCCGTC
TCCTCTCTAACATGGCACCCGATTCACAGCTCTCTCATATCTACAGGTAG
TGAGGACGGGTCTCTATATCACTATTTGCTTGATGAACCAAACCTGCCCT
CCGGGCAGATCCCTACAATTGCGCCATATGACAGCAACGACCCGGCTAAC
ACGCCGGCGCAGGTGATCTACCCTGCCCACAAGGTACAGTACGCGCACGG
TGCCACCATCTGGTCCCTCGACTGGCATCCTCTGGGTCATATTCTTGCAT
CCGGATCTAAAGATAACTTCACACGGTTCTGGTCCCGTGCCAGACCCGGA
GAGACTAGTTACATGAAGGATAGGTTCCACATCGGAGAAGAGGCGGCGGA
GGCCCAGGGTACATGGAGCCGGGGCTTCGGACGGCGGCAGATGCGTGAAG
AGGAAGAACAAGAACTTCAGGATGAGGCAGAGAGCTTGGTCGATCAGAAG
AAACCGGCCGGAATGTCATCTCTTCCCGGAATTCAATTCGCACCACCCGG
CGCCGCACCACAGCCAGACGGGATGGGTTCGATACTGCCAGGAATTGGGG
CTCCCCAGCCCCCACCCCAGCCGGGGTTTTCCACTTCAATGCCGCAAATG
GATCCTGGGCGTCTAGCAGCTCTTTTGTCCAATCAACCGCCCCCTCAGCC
GAACAATTTCCCTCCCACAACGGGACTGCCAGGGTTTCCCATGCACCCTG
CTATGTCGGGGACACCTCCGGTGAACGTTGACCTGGCAGAACTGCAGAAG
CAGCTTCTTTCTCAAGGAATCTCGCTGCCCCAGAACTTTCCGCCGCCAAA
TTTTCCTGGCATGCCCGGGGGCCTTCCCGGCCTGCAAGGGAGCAGTACGC
CCGATCACGGATATGGAAGATGAATGCTCCCCCCTCTTGCACGAGTCCAT
TCTCCGGCGGATACTATACCAGTGCGGCATTTACATCAGTCGATTGGAAA
ATCGAAGAAACCGATCACTGTCGTACGATGGACACCGGAAGGAAGACGCC
TGCTAACGGGAGGCCACACGGGCGAATTCATGCTATGGAATGGAACTGCC
TTCAACTTCGAAACTGTCATGGATGACTCGTGACGGACTATGGATCATCA
ATGGTGCAATGGATACGCACACGGAAACCCCGCTATAAAGGAGGTCATCA
GATTGAGGTGGAAAGGCCTAGTGCAAGCTATGTTGTGGATATGGCTTTTT
ACGACGACCCTGGGAACGATTCCCAGCCATTTGGGAGGCCCCCTAAATCC
TACGAAGGAGGGATTGCTGGGCCGCGACGACCGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003675-T1.utr5p1 | KJC3_003675-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09261LPY |
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR015943 |
| DBxref | InterPro:IPR001680 |
| DBxref | PFAM:PF00400 |
| DBxref | PFAM:PF12894 |
| Product | pre-mRNA cleavage and polyadenylation factor (CPF) complex subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:2584223..2586482 - |
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