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KJC3_003768-T2, KJC3_003768-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003768-T2
Unique NameKJC3_003768-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:2992526..2994710-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003768-T2 ID=KJC3_003768-T2|Name=KJC3_003768-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2185bp|location=Sequence derived from alignment at ch3:2992526..2994710- (Aspergillus niger KJC3)
CTGAAAACAAATAAATCTATCAGTAGTGCATCACTAGGACTTCGTCGAAG
AAAAAGCATAGAACTGACAGATTATTGTGTCAACCCCCAGGAGTTTAAAG
ACACGTATAGGAAATGTCACTTGATCAATGGAATGCCCCTCGTAATAACT
TTTGAAAAGATCTTTATTAGCAAGCTAAGTGACCCCTGTTGTTAGAGCAG
CCTCACTGAGCACGGCCAACCATCAACACTGCAGGGGTATTTCCACAGAG
TAGTCCAAAGACCAGTTTTCCTGCATGGCCAGCAACTTGAAGAATGAGCG
TAAAGCTTCACGGCTGTCGAATTGTGAGGGCACGGCTACCTGTTGAACGG
GGAAAGTGGGGTATGGAAGCATAGTCGAACTCGACTTGAGGCAAGCGATC
AATGGTACTTGCGAGCCCTCCCAAGCCAGAGCCACAAATTATTGCAACTC
GGGGTGCTGTCAATGATTCTGGTAGGCGTTCCTTCAGGAACGAGAACGCC
TCACTCGCATGTTGAAATGATGAGCTGCGAGAGGATGCCATGATGTCTTA
GGTCGTGGTCTCTTTCTAATTTCGCGCTAGCAGTAGTTGTTGGGGGGTGT
TTTTTTCTTTTCTTTTGTCAAAATAAGGCACACTGGAGCCATAAATGTAT
CTACAGCATCAGGATCATTTCAAATATGCTTTTAGATAAAAGTATGAGTT
ATCATTTCAATTATCGGAAGCCGGTAATTTGTCATGTGATCGGATGAGAA
CGCAAACAAGGCGGTCTGTTCCATGGCCAATCAAAGGTGGCCTTTCGCTC
GCTATCCTGGGGCACTGATGCGAAAAAGATTGTAGGTATTCAGATGAGGA
TATCCAAGGTCCCTGCAATACTACCTAGGGATCTGACGCATTGTTCCTGT
ATTGTCTAGAGTACCATCTATTCAATTCTTCCAATCATTGAATTTAACCA
TGGCATTATTCCTCAACTCTCGGCTACTCAAATGCACTGGCAGACAATTC
CAGGTAATCTTTCCTCACCCCATCCGGCTCTTTCGGCGAAGTCATATTAA
TAGCTTTCAGTTACTAGCAGGTTTTAGAGGCTACAGCACTTTCTCTGACA
TAACCCATCATGCACAGCCAGCGAGCGATTCCCTCCACCCAGCAGCCTCG
GCTGAATCCAGTGCACTGTTAGCGCTCTCACGACTACCTTGAACAACCAG
GAGAGCTAACTTGTGTTCTTACAGACAATCGACCGAACTGCAAACGAAAC
AATGGTCTGAACTTTGACTGATAATTCCAATAAATTGGTCTCGATGACAT
GCGCTTACTCATGATTAGGAGGGAACGCCTTGAGAGCATTAATAGTAAGG
CTCGACTTCCCAGGAGCGTTCAAGCTGTGTACCTACGACCCCTCCGGAGG
AAGGCCGAGTTTGGCCTTCCAGTCTGTGATCTTCAGTTGAGATCTTACAG
TGTACGGAACGTCGAATTTTTCGCCGATTTTGCTGTGCGGGCCGCTTACT
ACCTGAACCTTCCTGTCTCGGGGCCGGTGCCCTTGCCACGAATCGTTGAA
CGATGGACCGTCCCTAGAAGTAACTTCGTGCACAAAAAGAGTCAGGAGAA
TTTTGAAAGAATAACACTTCGACGCTTGGTACAAATCAAAGACGGCAACC
CTCAAGTTGTACAGACATGGCTAGCATTCTTGCGCAAGCATGCTTTCTAT
GGAGTCGGCATGAAAGCAAATGTCTGGGAACATGAAAGCCTCGGTATATT
GCTATTCTCATCTCGCTTTGTCCTGGTCACTGTTTGCCACGTCACTAACG
ATATCGTGGACACAGATGTAGCTGCAAACATGGACAGCACTCTTCCAGAA
GTCAAGAAGACGCTTGAGCCTTACCTTTCACAATTTGGTCAGCGGCAAGA
TGCAACATCTCATGACTCTATCTTAGACATCCTGGACAACGAACGCTTCG
TTGCATACAAGGGCCCTTTAACTACAGCACGCAAGGCATAAGTGCTTTTG
TTTTTTTACCGATACTTTGTATAATATCACATAGTTGTCATCATCTTGTA
CGATTTTACCAATCTTTTACAATTTCATTTTCCAGATTAATCTGTCTATA
AGCCTGCTGTCATGTGTTCTTGCTGGAGAAAGGCAAACTATCGGTACGAC
ATCTGTTGTTGCGGCATGTACGTGCTTTATGAAAT
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Coding sequence (CDS) from alignment at ch3:2992526..2994710-

>KJC3_003768-T2 ID=KJC3_003768-T2|Name=KJC3_003768-T2|organism=Aspergillus niger KJC3|type=CDS|length=1242bp|location=Sequence derived from alignment at ch3:2992526..2994710- (Aspergillus niger KJC3)
ATGTAGCTGCAAACATGGACAGCACTCTTCCAGAAGTCAAGAAGACGCTT
GAGCCTTACCTTTCACAATTTGGTCAGCGGCAAGATGCAACATCTCATGA
CTCTATCTTAGACATCCTGGACAACGAACGCTTCGTTGCATACAAGGGCC
CTTTAACTACAGCACGCAAGGCATAAATGCGCTTACTCATGATTAGGAGG
GAACGCCTTGAGAGCATTAATAGTAAGGCTCGACTTCCCAGGAGCGTTCA
AGCTGTGTACCTACGACCCCTCCGGAGGAAGGCCGAGTTTGGCCTTCCAG
TCTGTGATCTTCAGTTGAGATCTTACAGTGTACGGAACGTCGAATTTTTC
GCCGATTTTGCTGTGCGGGCCGCTTACTACCTGAACCTTCCTGTCTCGGG
GCCGGTGCCCTTGCCACGAATCGTTGAACGATGGACCGTCCCTAGAAGTA
ACTTCGTGCACAAAAAGAGTCAGGAGAATTTTGAAAGAATAACACTTCGA
CGCTTGGTACAAATCAAAGACGGCAACCCTCAAGTTGTACAGACATGGCT
AGCATTCTTGCGCAAGCATGCTTTCTATGGAGTCGGCATGAAAGCAAATG
TCTGGGAACATGAAAGCCTCGATGTAGCTGCAAACATGGACAGCACTCTT
CCAGAAGTCAAGAAGACGCTTGAGCCTTACCTTTCACAATTTGGTCAGCG
GCAAGATGCAACATCTCATGACTCTATCTTAGACATCCTGGACAACGAAC
GCTTCGTTGCATACAAGGGCCCTTTAACTACAGCACGCAAGGCATAAATG
CGCTTACTCATGATTAGGAGGGAACGCCTTGAGAGCATTAATAGTAAGGC
TCGACTTCCCAGGAGCGTTCAAGCTGTGTACCTACGACCCCTCCGGAGGA
AGGCCGAGTTTGGCCTTCCAGTCTGTGATCTTCAGTTGAGATCTTACAGT
GTACGGAACGTCGAATTTTTCGCCGATTTTGCTGTGCGGGCCGCTTACTA
CCTGAACCTTCCTGTCTCGGGGCCGGTGCCCTTGCCACGAATCGTTGAAC
GATGGACCGTCCCTAGAAGTAACTTCGTGCACAAAAAGAGTCAGGAGAAT
TTTGAAAGAATAACACTTCGACGCTTGGTACAAATCAAAGACGGCAACCC
TCAAGTTGTACAGACATGGCTAGCATTCTTGCGCAAGCATGCTTTCTATG
GAGTCGGCATGAAAGCAAATGTCTGGGAACATGAAAGCCTCG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RSM10KJC3_003768Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003768-T2KJC3_003768-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003768-T2.cdsKJC3_003768-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003768-T2.utr3p1KJC3_003768-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003768-T2.exon3KJC3_003768-T2.exon3Aspergillus niger KJC3exon
KJC3_003768-T2.exon2KJC3_003768-T2.exon2Aspergillus niger KJC3exon
KJC3_003768-T2.exon1KJC3_003768-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003768-T2.utr5p2KJC3_003768-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_003768-T2.utr5p1KJC3_003768-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR001848
DBxrefInterPro:IPR036838
DBxrefInterPro:IPR027486
DBxrefPFAM:PF00338
Product variant 2
Productmitochondrial 37S ribosomal protein rsm10
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:2992526..2994710 -
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