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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3064449..3065078- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003793-T1 ID=KJC3_003793-T1|Name=KJC3_003793-T1|organism=Aspergillus niger KJC3|type=mRNA|length=630bp|location=Sequence derived from alignment at ch3:3064449..3065078- (Aspergillus niger KJC3)
GAGCCTTCACGATCCCACGGCTACCCCAATTCACTTAAATATTGACTAGG
ACATCGGCTGTACACATTTCCTTCGATAGATAAGCATGGCCACGAATTCT
GGAGCCCCTGATCTGGGCAAAGATGGCTCCGGCTCCATTGCTATCACCGT
TGAGTTCACGTTCGGCTCTCACCCATATCATGCAAGCACCCCAGGTTTGC
ACTCATTACTGATTCGGCTTTCGCAAACAGGGGAGGTCTGGAGATCTTGT
TTGCCAATGAGCGCAAACACCACGTCACGCTACCTTCGCTTCTTGACGAC
GGCAGCCGGCCAACTATCAGCTACCTCCTGGGTCATCTGGTGAAGAACTA
CATGAAGGATCAGAGGCAGGAATTGTTCATACTGGAAGGCAATGTGTACG
TTCACCGTATGGGAATACACGGCAAGGCAAGAACACTGACGTTGGGCGAA
CAGTCGACCGGGAATCTTGGTTCTCATCAACGACGCCGATTGGGAGCTCG
AAGGCGAGGAGAACTACGAACTTCAACAAAATGATAACATTGTCTTCGTT
TCTACGCTTCATGGGGGCTAGCGCTAATGACTGTCTACGTTCACAATCGT
ACCGATGATACTCCTACGGGCAAGCGGTCG back to topCoding sequence (CDS) from alignment at ch3:3064449..3065078- >KJC3_003793-T1 ID=KJC3_003793-T1|Name=KJC3_003793-T1|organism=Aspergillus niger KJC3|type=CDS|length=1071bp|location=Sequence derived from alignment at ch3:3064449..3065078- (Aspergillus niger KJC3)
TCGACCGGGAATCTTGGTTCTCATCAACGACGCCGATTGGGAGCTCGAAG
GCGAGGAGAACTACGAACTTCAACAAAATGATAACATTGTCTTCGTTTCT
ACGCTTCATGGGGGCTAGGGGAGGTCTGGAGATCTTGTTTGCCAATGAGC
GCAAACACCACGTCACGCTACCTTCGCTTCTTGACGACGGCAGCCGGCCA
ACTATCAGCTACCTCCTGGGTCATCTGGTGAAGAACTACATGAAGGATCA
GAGGCAGGAATTGTTCATACTGGAAGGCAATGTATGGCCACGAATTCTGG
AGCCCCTGATCTGGGCAAAGATGGCTCCGGCTCCATTGCTATCACCGTTG
AGTTCACTCGACCGGGAATCTTGGTTCTCATCAACGACGCCGATTGGGAG
CTCGAAGGCGAGGAGAACTACGAACTTCAACAAAATGATAACATTGTCTT
CGTTTCTACGCTTCATGGGGGCTAGGGGAGGTCTGGAGATCTTGTTTGCC
AATGAGCGCAAACACCACGTCACGCTACCTTCGCTTCTTGACGACGGCAG
CCGGCCAACTATCAGCTACCTCCTGGGTCATCTGGTGAAGAACTACATGA
AGGATCAGAGGCAGGAATTGTTCATACTGGAAGGCAATGTATGGCCACGA
ATTCTGGAGCCCCTGATCTGGGCAAAGATGGCTCCGGCTCCATTGCTATC
ACCGTTGAGTTCACTCGACCGGGAATCTTGGTTCTCATCAACGACGCCGA
TTGGGAGCTCGAAGGCGAGGAGAACTACGAACTTCAACAAAATGATAACA
TTGTCTTCGTTTCTACGCTTCATGGGGGCTAGGGGAGGTCTGGAGATCTT
GTTTGCCAATGAGCGCAAACACCACGTCACGCTACCTTCGCTTCTTGACG
ACGGCAGCCGGCCAACTATCAGCTACCTCCTGGGTCATCTGGTGAAGAAC
TACATGAAGGATCAGAGGCAGGAATTGTTCATACTGGAAGGCAATGTATG
GCCACGAATTCTGGAGCCCCTGATCTGGGCAAAGATGGCTCCGGCTCCAT
TGCTATCACCGTTGAGTTCAC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0034227 | tRNA thio-modification |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003793-T1.utr3p1 | KJC3_003793-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003793-T1.utr5p1 | KJC3_003793-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265K1R |
| DBxref | InterPro:IPR016155 |
| DBxref | InterPro:IPR015221 |
| DBxref | InterPro:IPR012675 |
| DBxref | PFAM:PF09138 |
| DBxref | PFAM:PF02597 |
| Product | Ubiquitin- modifier 1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3064449..3065078 - |
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