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KJC3_003800-T1, KJC3_003800-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003800-T1
Unique NameKJC3_003800-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:3076355..3077998+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003800-T1 ID=KJC3_003800-T1|Name=KJC3_003800-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1644bp|location=Sequence derived from alignment at ch3:3076355..3077998+ (Aspergillus niger KJC3)
GCCAAATCTATGCCGACGCGTCTCCGCCTCGACTTTCGCGTCTCCCGCTT
CTTCAGTTCCAACCCATCACCAGCGCTTTGTTCTTACTCTCGGTCTAGCA
CACAACAGAACCATTCAGCCTGAGCTAACATATAATTTGCATCAAGTTAT
CATTCGCTATGGTTCAAGCCGAATCCTCAGCCAGTGCCTCTCGTAATGGC
CTCAAGGCGCATACGGCCGGCGCCCCTCCTGACTATGAACTGCCCTGGTA
CGTACAGCAGGTCCCAGCACTAAAGCCAGCTTAGGATGTCGAGTCTGATT
GCCAAATTTAAACAATAGGGTAGAGAAATATCGCCCGGTATATCTCGATG
ATATTGTTGGAAACACAGAAACAGTTGAGCGCTTGAAGATCATCGCTAAG
GATGGAAACATGCCGCACGTTATCATCTCGGGCATGCCCGGTATTGGAAA
GACTACTTCGATCTTGTGCTTGGCGAGACAGCTACTGGGAGACGCATATA
AGGAGGCGGTTCTGGAGCTCAATGCTAGTGATGAAAGAGGTACATCTACC
CCACTTGGAGAGGGAGACGAGAGACGGCTTTAATCTAATATGCTCCAGGT
ATCGACGTGGTACGGAACCGGATCAAAGGCTTTGCGCAGAAGAAGGTCAC
TTTGCCGCCTGGTCGTCATAAGCTTGTCATCCTTGATGAGGCAGATAGGT
ACGTACTAGACAGTGAGCTACATTACCTTTCCTGGATGCTCACGGTGGTA
TAGTATGACATCAGGTGCCCAGCAAGCTTTGCGGCGTACAATGGAGATTT
ACTCGTCGACTACACGGTTCGCGTTCGCCTGTAATCAGTCAAATAAAATC
ATCGAGCCGATTCAGTCGCGATGCGCTATCCTACGTTATGCTCGGTTGAC
CGATGCGCAAATTGTCAAGCGTCTGAAACAAGTATGCGATGCTGAGAAAG
TGGAACATAACGAAGAGGGCATTGCCGCCCTGGTATTCAGTGCTGAGGGA
GATATGCGTCAGGCTATCAACAACTTGCAGAGTACATGGTCGGGTTTCGG
TTTCGTCAGTGGGGACAACGTCTTCAGGGTGGTCGACAGCCCGCACCCGA
TCAAGGTCCAGGCAATGATCAAGGCCTGCTGGGAAGGCAAGGTTGATGCG
GCGTTGGAGACACTGAATGAATTGTGGTATGTACACAGTGCAGTCTGCCA
ATTTTATGTTTGTGGACTCGTCCTGACCGTATTTCTAGGGAATTGGGGTA
TTCCTCCCATGATATCATCAGTACCATGTTCCGTGTCACCAAGACAATTC
CCACTCTGTCAGAACATTCGAAGTTGGAATTCATCCGGGAGATTGGTTTT
ACGCACATGCGCATTCTAGACGGCGTGCAGTCACTGCTGCAGCTTAGCGG
CTGCGTTGCGAAGCTTTGCAGGATCAACATGAAGCCGCAGCTCTTTGAGC
CGCCGAAGAATTGAGATGAAAAACGAAAGTGTAAGTTAGATGCAGGCATA
ACTTGGAGTTTTGGGGCGTTTATAAAGCAAGGCTATACCAAGCCCTGGGG
TATTTAGCATATGATTTCAACACTTTCTTTGATTTTCAAGTTATTGTTGT
TAGAGACTCCAGGTATCGTTTATAAGATTCAGTTCATACATTGT
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Coding sequence (CDS) from alignment at ch3:3076355..3077998+

>KJC3_003800-T1 ID=KJC3_003800-T1|Name=KJC3_003800-T1|organism=Aspergillus niger KJC3|type=CDS|length=5295bp|location=Sequence derived from alignment at ch3:3076355..3077998+ (Aspergillus niger KJC3)
ATGGTTCAAGCCGAATCCTCAGCCAGTGCCTCTCGTAATGGCCTCAAGGC
GCATACGGCCGGCGCCCCTCCTGACTATGAACTGCCCTGGGTAGAGAAAT
ATCGCCCGGTATATCTCGATGATATTGTTGGAAACACAGAAACAGTTGAG
CGCTTGAAGATCATCGCTAAGGATGGAAACATGCCGCACGTTATCATCTC
GGGCATGCCCGGTATTGGAAAGACTACTTCGATCTTGTGCTTGGCGAGAC
AGCTACTGGGAGACGCATATAAGGAGGCGGTTCTGGAGCTCAATGCTAGT
GATGAAAGAGGTATCGACGTGGTACGGAACCGGATCAAAGGCTTTGCGCA
GAAGAAGGTCACTTTGCCGCCTGGTCGTCATAAGCTTGTCATCCTTGATG
AGGCAGATAGTATGACATCAGGTGCCCAGCAAGCTTTGCGGCGTACAATG
GAGATTTACTCGTCGACTACACGGTTCGCGTTCGCCTGTAATCAGTCAAA
TAAAATCATCGAGCCGATTCAGTCGCGATGCGCTATCCTACGTTATGCTC
GGTTGACCGATGCGCAAATTGTCAAGCGTCTGAAACAAGTATGCGATGCT
GAGAAAGTGGAACATAACGAAGAGGGCATTGCCGCCCTGGTATTCAGTGC
TGAGGGAGATATGCGTCAGGCTATCAACAACTTGCAGAGTACATGGTCGG
GTTTCGGTTTCGTCAGTGGGGACAACGTCTTCAGGGTGGTCGACAGCCCG
CACCCGATCAAGGTCCAGGCAATGATCAAGGCCTGCTGGGAAGGCAAGGT
TGATGCGGCGTTGGAGACACTGAATGAATTGTGGGAATTGGGGTATTCCT
CCCATGATATCATCAGTACCATGTTCCGTGTCACCAAGACAATTCCCACT
CTGTCAGAACATTCGAAGTTGGAATTCATCCGGGAGATTGGTTTTACGCA
CATGCGCATTCTAGACGGCGTGCAGTCACTGCTGCAGCTTAGCGGCTGCG
TTGCGAAGCTTTGCAGGATCAACATGAAGCCGCAGCTCTTTGAGCCGCCG
AAGAATTGAATGGTTCAAGCCGAATCCTCAGCCAGTGCCTCTCGTAATGG
CCTCAAGGCGCATACGGCCGGCGCCCCTCCTGACTATGAACTGCCCTGGG
TAGAGAAATATCGCCCGGTATATCTCGATGATATTGTTGGAAACACAGAA
ACAGTTGAGCGCTTGAAGATCATCGCTAAGGATGGAAACATGCCGCACGT
TATCATCTCGGGCATGCCCGGTATTGGAAAGACTACTTCGATCTTGTGCT
TGGCGAGACAGCTACTGGGAGACGCATATAAGGAGGCGGTTCTGGAGCTC
AATGCTAGTGATGAAAGAGGTATCGACGTGGTACGGAACCGGATCAAAGG
CTTTGCGCAGAAGAAGGTCACTTTGCCGCCTGGTCGTCATAAGCTTGTCA
TCCTTGATGAGGCAGATAGTATGACATCAGGTGCCCAGCAAGCTTTGCGG
CGTACAATGGAGATTTACTCGTCGACTACACGGTTCGCGTTCGCCTGTAA
TCAGTCAAATAAAATCATCGAGCCGATTCAGTCGCGATGCGCTATCCTAC
GTTATGCTCGGTTGACCGATGCGCAAATTGTCAAGCGTCTGAAACAAGTA
TGCGATGCTGAGAAAGTGGAACATAACGAAGAGGGCATTGCCGCCCTGGT
ATTCAGTGCTGAGGGAGATATGCGTCAGGCTATCAACAACTTGCAGAGTA
CATGGTCGGGTTTCGGTTTCGTCAGTGGGGACAACGTCTTCAGGGTGGTC
GACAGCCCGCACCCGATCAAGGTCCAGGCAATGATCAAGGCCTGCTGGGA
AGGCAAGGTTGATGCGGCGTTGGAGACACTGAATGAATTGTGGGAATTGG
GGTATTCCTCCCATGATATCATCAGTACCATGTTCCGTGTCACCAAGACA
ATTCCCACTCTGTCAGAACATTCGAAGTTGGAATTCATCCGGGAGATTGG
TTTTACGCACATGCGCATTCTAGACGGCGTGCAGTCACTGCTGCAGCTTA
GCGGCTGCGTTGCGAAGCTTTGCAGGATCAACATGAAGCCGCAGCTCTTT
GAGCCGCCGAAGAATTGAATGGTTCAAGCCGAATCCTCAGCCAGTGCCTC
TCGTAATGGCCTCAAGGCGCATACGGCCGGCGCCCCTCCTGACTATGAAC
TGCCCTGGGTAGAGAAATATCGCCCGGTATATCTCGATGATATTGTTGGA
AACACAGAAACAGTTGAGCGCTTGAAGATCATCGCTAAGGATGGAAACAT
GCCGCACGTTATCATCTCGGGCATGCCCGGTATTGGAAAGACTACTTCGA
TCTTGTGCTTGGCGAGACAGCTACTGGGAGACGCATATAAGGAGGCGGTT
CTGGAGCTCAATGCTAGTGATGAAAGAGGTATCGACGTGGTACGGAACCG
GATCAAAGGCTTTGCGCAGAAGAAGGTCACTTTGCCGCCTGGTCGTCATA
AGCTTGTCATCCTTGATGAGGCAGATAGTATGACATCAGGTGCCCAGCAA
GCTTTGCGGCGTACAATGGAGATTTACTCGTCGACTACACGGTTCGCGTT
CGCCTGTAATCAGTCAAATAAAATCATCGAGCCGATTCAGTCGCGATGCG
CTATCCTACGTTATGCTCGGTTGACCGATGCGCAAATTGTCAAGCGTCTG
AAACAAGTATGCGATGCTGAGAAAGTGGAACATAACGAAGAGGGCATTGC
CGCCCTGGTATTCAGTGCTGAGGGAGATATGCGTCAGGCTATCAACAACT
TGCAGAGTACATGGTCGGGTTTCGGTTTCGTCAGTGGGGACAACGTCTTC
AGGGTGGTCGACAGCCCGCACCCGATCAAGGTCCAGGCAATGATCAAGGC
CTGCTGGGAAGGCAAGGTTGATGCGGCGTTGGAGACACTGAATGAATTGT
GGGAATTGGGGTATTCCTCCCATGATATCATCAGTACCATGTTCCGTGTC
ACCAAGACAATTCCCACTCTGTCAGAACATTCGAAGTTGGAATTCATCCG
GGAGATTGGTTTTACGCACATGCGCATTCTAGACGGCGTGCAGTCACTGC
TGCAGCTTAGCGGCTGCGTTGCGAAGCTTTGCAGGATCAACATGAAGCCG
CAGCTCTTTGAGCCGCCGAAGAATTGAATGGTTCAAGCCGAATCCTCAGC
CAGTGCCTCTCGTAATGGCCTCAAGGCGCATACGGCCGGCGCCCCTCCTG
ACTATGAACTGCCCTGGGTAGAGAAATATCGCCCGGTATATCTCGATGAT
ATTGTTGGAAACACAGAAACAGTTGAGCGCTTGAAGATCATCGCTAAGGA
TGGAAACATGCCGCACGTTATCATCTCGGGCATGCCCGGTATTGGAAAGA
CTACTTCGATCTTGTGCTTGGCGAGACAGCTACTGGGAGACGCATATAAG
GAGGCGGTTCTGGAGCTCAATGCTAGTGATGAAAGAGGTATCGACGTGGT
ACGGAACCGGATCAAAGGCTTTGCGCAGAAGAAGGTCACTTTGCCGCCTG
GTCGTCATAAGCTTGTCATCCTTGATGAGGCAGATAGTATGACATCAGGT
GCCCAGCAAGCTTTGCGGCGTACAATGGAGATTTACTCGTCGACTACACG
GTTCGCGTTCGCCTGTAATCAGTCAAATAAAATCATCGAGCCGATTCAGT
CGCGATGCGCTATCCTACGTTATGCTCGGTTGACCGATGCGCAAATTGTC
AAGCGTCTGAAACAAGTATGCGATGCTGAGAAAGTGGAACATAACGAAGA
GGGCATTGCCGCCCTGGTATTCAGTGCTGAGGGAGATATGCGTCAGGCTA
TCAACAACTTGCAGAGTACATGGTCGGGTTTCGGTTTCGTCAGTGGGGAC
AACGTCTTCAGGGTGGTCGACAGCCCGCACCCGATCAAGGTCCAGGCAAT
GATCAAGGCCTGCTGGGAAGGCAAGGTTGATGCGGCGTTGGAGACACTGA
ATGAATTGTGGGAATTGGGGTATTCCTCCCATGATATCATCAGTACCATG
TTCCGTGTCACCAAGACAATTCCCACTCTGTCAGAACATTCGAAGTTGGA
ATTCATCCGGGAGATTGGTTTTACGCACATGCGCATTCTAGACGGCGTGC
AGTCACTGCTGCAGCTTAGCGGCTGCGTTGCGAAGCTTTGCAGGATCAAC
ATGAAGCCGCAGCTCTTTGAGCCGCCGAAGAATTGAATGGTTCAAGCCGA
ATCCTCAGCCAGTGCCTCTCGTAATGGCCTCAAGGCGCATACGGCCGGCG
CCCCTCCTGACTATGAACTGCCCTGGGTAGAGAAATATCGCCCGGTATAT
CTCGATGATATTGTTGGAAACACAGAAACAGTTGAGCGCTTGAAGATCAT
CGCTAAGGATGGAAACATGCCGCACGTTATCATCTCGGGCATGCCCGGTA
TTGGAAAGACTACTTCGATCTTGTGCTTGGCGAGACAGCTACTGGGAGAC
GCATATAAGGAGGCGGTTCTGGAGCTCAATGCTAGTGATGAAAGAGGTAT
CGACGTGGTACGGAACCGGATCAAAGGCTTTGCGCAGAAGAAGGTCACTT
TGCCGCCTGGTCGTCATAAGCTTGTCATCCTTGATGAGGCAGATAGTATG
ACATCAGGTGCCCAGCAAGCTTTGCGGCGTACAATGGAGATTTACTCGTC
GACTACACGGTTCGCGTTCGCCTGTAATCAGTCAAATAAAATCATCGAGC
CGATTCAGTCGCGATGCGCTATCCTACGTTATGCTCGGTTGACCGATGCG
CAAATTGTCAAGCGTCTGAAACAAGTATGCGATGCTGAGAAAGTGGAACA
TAACGAAGAGGGCATTGCCGCCCTGGTATTCAGTGCTGAGGGAGATATGC
GTCAGGCTATCAACAACTTGCAGAGTACATGGTCGGGTTTCGGTTTCGTC
AGTGGGGACAACGTCTTCAGGGTGGTCGACAGCCCGCACCCGATCAAGGT
CCAGGCAATGATCAAGGCCTGCTGGGAAGGCAAGGTTGATGCGGCGTTGG
AGACACTGAATGAATTGTGGGAATTGGGGTATTCCTCCCATGATATCATC
AGTACCATGTTCCGTGTCACCAAGACAATTCCCACTCTGTCAGAACATTC
GAAGTTGGAATTCATCCGGGAGATTGGTTTTACGCACATGCGCATTCTAG
ACGGCGTGCAGTCACTGCTGCAGCTTAGCGGCTGCGTTGCGAAGCTTTGC
AGGATCAACATGAAGCCGCAGCTCTTTGAGCCGCCGAAGAATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RFC4KJC3_003800Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003800-T1KJC3_003800-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003800-T1.utr5p1KJC3_003800-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003800-T1.exon1KJC3_003800-T1.exon1Aspergillus niger KJC3exon
KJC3_003800-T1.exon2KJC3_003800-T1.exon2Aspergillus niger KJC3exon
KJC3_003800-T1.exon3KJC3_003800-T1.exon3Aspergillus niger KJC3exon
KJC3_003800-T1.exon4KJC3_003800-T1.exon4Aspergillus niger KJC3exon
KJC3_003800-T1.exon5KJC3_003800-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003800-T1.cdsKJC3_003800-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003800-T1.utr3p1KJC3_003800-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR008921
DBxrefInterPro:IPR013748
DBxrefInterPro:IPR003959
DBxrefInterPro:IPR003593
DBxrefPFAM:PF08542
DBxrefPFAM:PF13173
DBxrefPFAM:PF00004
Productreplication factor C subunit 4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:3076355..3077998 +
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