|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3129875..3132269+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003817-T1 ID=KJC3_003817-T1|Name=KJC3_003817-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2395bp|location=Sequence derived from alignment at ch3:3129875..3132269+ (Aspergillus niger KJC3)
TGCGTGTCTCAACCAATCCACCCGCCCTCCAAGTCAACTCACCCTCCTCT
GATCTACCACATTTTGGATGCTGATGTATCATCTCCCGTTTCCGATCTTG
AGAGTCTAGAATCATTTCCACGGATCTGCTAGACCAACCTTCTTCGTTTT
CCTCCTCTTGCCCCTCTCTCCACACCTCACCCCCTCATTCAACATGGATG
TCGTCGCGGCGGTGTCGGGTTACATCTCCAAGATGGTCACCGCGGGGGAC
CCTTCGCCGACAGGTGGTTCCAGCTCTTCATCGGCCAAGATGAAGATATT
GCTTCTCGACAGTGAGACAGTGGGACTTGCGATTCTCTCATTGATCCCTG
TGGAAGCTGTGCGCTAATCCAACGGCTCCAGGTACCCATTGTGTCCACCG
CCATCACCCAGTCCGCTTTGTTGAACCATGAAGTCTACCTCATCGATCGC
CTCGATAATGCCGCTCGCGAACGTATGCGACATCTCCGCTGCCTTTGTTT
CGTGCGCCCTTCCCCCACCTCCGTTCAATTCCTGATCGACGAGCTCCGCG
AGCCCAAGTACGGAGAATACTACATCTACCTCACCAATATTATTCGCAAA
TCCTCCCTCGAACGTCTCGCCGAAGCGGATTCCCACGAGGTAGTTCGCGT
GGTGCAGGAACACTTTGCCGACTTCCTTGTGATCAATCCGGATCTCTGTT
CCCTGAATTTGGGCTTCCCACAGCAGCGCTTGTGGAGCCAGTCGCCAGAT
CTGTGGAATGCGGATGCCTTACAAAGAGCAACGGAGGGGGTCATTGCCAT
GTTGTTGGCGCTGAAGAAGAATCCGCTGATCCGTTACGAAAAGAACAGTC
TGCTAGCGAAGAAGTTGGCCACAGAGGTCCGCTATCAAGTGACGCAGGAA
GAGCAGCTCTTCAATTTCCGCAAGACCGATACACCCCCGATCCTGTTGAT
TTTGGACCGTAGAGACGACCCCATCACTCCGCTACTGACCCAGTGGACCT
ACCAAGCGATGGTGCATGAGTTGATGGGCATTCACAATGGGCGCGTGGAC
CTCCGGGACGTACCGGAGATTCGACCGGAATTGCGTGAAATCGTCCTTTC
CCAGGATCAAGATCCGTTCTTCAAGAAGAATATGTACCAGAACTTTGGTG
ATCTAGGCCAGAACATCAAGGAGTATGTTGAGCAGTACCAGGTCAAAACG
CAAAACACGATGAACATCGAGTCGATTGCGGACATGAAGCGCTTCGTGGA
GGACTATCCCGAGTTTCGTAAACTATCGGGCAATGTGAGTAAACATGTCA
CACTAGTGGGGGAGCTGAGTCGGCGCGTGGGTGAGGATGACCTGCTCGAC
GTCAGTGAGTTGGAGCAGAGCTTGGCTTGCAATGACAACCACGCCAATGA
CCTCAAGGTACGTGGACTCTTTTTTCTCTCTCCGGGACGGAGCTTGCGCC
AGACCAGTTGTTGACACCATCTCGTGCAGAACCTACAACGAATCATTCAA
CTACCTAGCGTTCCTGCAGAGAACAAGTTGCGCTTGGTTGCTCTGTACGC
CATCCGCTACGAGAAGCAACCGAACAATGCACTCCCGATCCTGCTCGATC
TCCTCGTCACCGCCGGCAACGTCCCATCATACAAGGTCAACATTATCCCT
AAACTCCTCGCCTACCACCACTCCTTACAAGCCCCGCCGGTCGCAGGCGG
CTTTTCTGACCTCTTCGAATCCACATCCCTCTTCTCCGGTGCCCGAGACC
GGTTCAAGGGTCTGAAAGGCGTCGAAAACGTCTACACCCAGCACTCGCCT
CGCCTGGAAGCCACTCTCCAAAATCTGATTAAAGGACGCCTGAAGGAGCT
GCAATACCCGTTTCTCGAAGGCGGGGGCCATACACGAGACAAGCCCCAAG
ATATCATCATTTTCATGGTGGGCGGGGCGACGTATGAGGAAGCGAAAATG
GTCGCCCAAGTCAATGCCAGCTCACCTGGAGTAAGAGTCGTCTTAGGAGG
CACCTCCATTCACAATAGCACAAGCTTCCTTGAGGAAGTCGATGATGCCG
TGAGCGGCTGGCCTGAGCCCGCCCCCTCGTCCGCCGCTGGTCGGCTTCAG
AGGGCAGTCGGACATTAACCTCTGCTTTGCTTCTTTGCCTCTGTGTATCT
GTAGCTTCTTATTATAATATATCCTGAAATCTTAGCTGTTAGTCACTTTC
ATGTCTGTCTCATGAGTTTGTTCCGCAGATTGTTATCATTAATCTGCAAA
CACAGGAAATGAGGCCACCTCTGCCTTGAGGTATTTGAACAGAGTATAGT
TATGCTTCGTGTATGGTATCCCAAGCCAATCCGGCCAAGCTGCGTGCATA
GCTAGTTCATTCTATTAACGTGGCACAATACACAACAGTAACGAC back to topCoding sequence (CDS) from alignment at ch3:3129875..3132269+ >KJC3_003817-T1 ID=KJC3_003817-T1|Name=KJC3_003817-T1|organism=Aspergillus niger KJC3|type=CDS|length=5373bp|location=Sequence derived from alignment at ch3:3129875..3132269+ (Aspergillus niger KJC3)
ATGGATGTCGTCGCGGCGGTGTCGGGTTACATCTCCAAGATGGTCACCGC
GGGGGACCCTTCGCCGACAGGTGGTTCCAGCTCTTCATCGGCCAAGATGA
AGATATTGCTTCTCGACAGTGAGACAGTACCCATTGTGTCCACCGCCATC
ACCCAGTCCGCTTTGTTGAACCATGAAGTCTACCTCATCGATCGCCTCGA
TAATGCCGCTCGCGAACGTATGCGACATCTCCGCTGCCTTTGTTTCGTGC
GCCCTTCCCCCACCTCCGTTCAATTCCTGATCGACGAGCTCCGCGAGCCC
AAGTACGGAGAATACTACATCTACCTCACCAATATTATTCGCAAATCCTC
CCTCGAACGTCTCGCCGAAGCGGATTCCCACGAGGTAGTTCGCGTGGTGC
AGGAACACTTTGCCGACTTCCTTGTGATCAATCCGGATCTCTGTTCCCTG
AATTTGGGCTTCCCACAGCAGCGCTTGTGGAGCCAGTCGCCAGATCTGTG
GAATGCGGATGCCTTACAAAGAGCAACGGAGGGGGTCATTGCCATGTTGT
TGGCGCTGAAGAAGAATCCGCTGATCCGTTACGAAAAGAACAGTCTGCTA
GCGAAGAAGTTGGCCACAGAGGTCCGCTATCAAGTGACGCAGGAAGAGCA
GCTCTTCAATTTCCGCAAGACCGATACACCCCCGATCCTGTTGATTTTGG
ACCGTAGAGACGACCCCATCACTCCGCTACTGACCCAGTGGACCTACCAA
GCGATGGTGCATGAGTTGATGGGCATTCACAATGGGCGCGTGGACCTCCG
GGACGTACCGGAGATTCGACCGGAATTGCGTGAAATCGTCCTTTCCCAGG
ATCAAGATCCGTTCTTCAAGAAGAATATGTACCAGAACTTTGGTGATCTA
GGCCAGAACATCAAGGAGTATGTTGAGCAGTACCAGGTCAAAACGCAAAA
CACGATGAACATCGAGTCGATTGCGGACATGAAGCGCTTCGTGGAGGACT
ATCCCGAGTTTCGTAAACTATCGGGCAATGTGAGTAAACATGTCACACTA
GTGGGGGAGCTGAGTCGGCGCGTGGGTGAGGATGACCTGCTCGACGTCAG
TGAGTTGGAGCAGAGCTTGGCTTGCAATGACAACCACGCCAATGACCTCA
AGAACCTACAACGAATCATTCAACTACCTAGCGTTCCTGCAGAGAACAAG
TTGCGCTTGGTTGCTCTGTACGCCATCCGCTACGAGAAGCAACCGAACAA
TGCACTCCCGATCCTGCTCGATCTCCTCGTCACCGCCGGCAACGTCCCAT
CATACAAGGTCAACATTATCCCTAAACTCCTCGCCTACCACCACTCCTTA
CAAGCCCCGCCGGTCGCAGGCGGCTTTTCTGACCTCTTCGAATCCACATC
CCTCTTCTCCGGTGCCCGAGACCGGTTCAAGGGTCTGAAAGGCGTCGAAA
ACGTCTACACCCAGCACTCGCCTCGCCTGGAAGCCACTCTCCAAAATCTG
ATTAAAGGACGCCTGAAGGAGCTGCAATACCCGTTTCTCGAAGGCGGGGG
CCATACACGAGACAAGCCCCAAGATATCATCATTTTCATGGTGGGCGGGG
CGACGTATGAGGAAGCGAAAATGGTCGCCCAAGTCAATGCCAGCTCACCT
GGAGTAAGAGTCGTCTTAGGAGGCACCTCCATTCACAATAGCACAAGCTT
CCTTGAGGAAGTCGATGATGCCGTGAGCGGCTGGCCTGAGCCCGCCCCCT
CGTCCGCCGCTGGTCGGCTTCAGAGGGCAGTCGGACATTAAATGGATGTC
GTCGCGGCGGTGTCGGGTTACATCTCCAAGATGGTCACCGCGGGGGACCC
TTCGCCGACAGGTGGTTCCAGCTCTTCATCGGCCAAGATGAAGATATTGC
TTCTCGACAGTGAGACAGTACCCATTGTGTCCACCGCCATCACCCAGTCC
GCTTTGTTGAACCATGAAGTCTACCTCATCGATCGCCTCGATAATGCCGC
TCGCGAACGTATGCGACATCTCCGCTGCCTTTGTTTCGTGCGCCCTTCCC
CCACCTCCGTTCAATTCCTGATCGACGAGCTCCGCGAGCCCAAGTACGGA
GAATACTACATCTACCTCACCAATATTATTCGCAAATCCTCCCTCGAACG
TCTCGCCGAAGCGGATTCCCACGAGGTAGTTCGCGTGGTGCAGGAACACT
TTGCCGACTTCCTTGTGATCAATCCGGATCTCTGTTCCCTGAATTTGGGC
TTCCCACAGCAGCGCTTGTGGAGCCAGTCGCCAGATCTGTGGAATGCGGA
TGCCTTACAAAGAGCAACGGAGGGGGTCATTGCCATGTTGTTGGCGCTGA
AGAAGAATCCGCTGATCCGTTACGAAAAGAACAGTCTGCTAGCGAAGAAG
TTGGCCACAGAGGTCCGCTATCAAGTGACGCAGGAAGAGCAGCTCTTCAA
TTTCCGCAAGACCGATACACCCCCGATCCTGTTGATTTTGGACCGTAGAG
ACGACCCCATCACTCCGCTACTGACCCAGTGGACCTACCAAGCGATGGTG
CATGAGTTGATGGGCATTCACAATGGGCGCGTGGACCTCCGGGACGTACC
GGAGATTCGACCGGAATTGCGTGAAATCGTCCTTTCCCAGGATCAAGATC
CGTTCTTCAAGAAGAATATGTACCAGAACTTTGGTGATCTAGGCCAGAAC
ATCAAGGAGTATGTTGAGCAGTACCAGGTCAAAACGCAAAACACGATGAA
CATCGAGTCGATTGCGGACATGAAGCGCTTCGTGGAGGACTATCCCGAGT
TTCGTAAACTATCGGGCAATGTGAGTAAACATGTCACACTAGTGGGGGAG
CTGAGTCGGCGCGTGGGTGAGGATGACCTGCTCGACGTCAGTGAGTTGGA
GCAGAGCTTGGCTTGCAATGACAACCACGCCAATGACCTCAAGAACCTAC
AACGAATCATTCAACTACCTAGCGTTCCTGCAGAGAACAAGTTGCGCTTG
GTTGCTCTGTACGCCATCCGCTACGAGAAGCAACCGAACAATGCACTCCC
GATCCTGCTCGATCTCCTCGTCACCGCCGGCAACGTCCCATCATACAAGG
TCAACATTATCCCTAAACTCCTCGCCTACCACCACTCCTTACAAGCCCCG
CCGGTCGCAGGCGGCTTTTCTGACCTCTTCGAATCCACATCCCTCTTCTC
CGGTGCCCGAGACCGGTTCAAGGGTCTGAAAGGCGTCGAAAACGTCTACA
CCCAGCACTCGCCTCGCCTGGAAGCCACTCTCCAAAATCTGATTAAAGGA
CGCCTGAAGGAGCTGCAATACCCGTTTCTCGAAGGCGGGGGCCATACACG
AGACAAGCCCCAAGATATCATCATTTTCATGGTGGGCGGGGCGACGTATG
AGGAAGCGAAAATGGTCGCCCAAGTCAATGCCAGCTCACCTGGAGTAAGA
GTCGTCTTAGGAGGCACCTCCATTCACAATAGCACAAGCTTCCTTGAGGA
AGTCGATGATGCCGTGAGCGGCTGGCCTGAGCCCGCCCCCTCGTCCGCCG
CTGGTCGGCTTCAGAGGGCAGTCGGACATTAAATGGATGTCGTCGCGGCG
GTGTCGGGTTACATCTCCAAGATGGTCACCGCGGGGGACCCTTCGCCGAC
AGGTGGTTCCAGCTCTTCATCGGCCAAGATGAAGATATTGCTTCTCGACA
GTGAGACAGTACCCATTGTGTCCACCGCCATCACCCAGTCCGCTTTGTTG
AACCATGAAGTCTACCTCATCGATCGCCTCGATAATGCCGCTCGCGAACG
TATGCGACATCTCCGCTGCCTTTGTTTCGTGCGCCCTTCCCCCACCTCCG
TTCAATTCCTGATCGACGAGCTCCGCGAGCCCAAGTACGGAGAATACTAC
ATCTACCTCACCAATATTATTCGCAAATCCTCCCTCGAACGTCTCGCCGA
AGCGGATTCCCACGAGGTAGTTCGCGTGGTGCAGGAACACTTTGCCGACT
TCCTTGTGATCAATCCGGATCTCTGTTCCCTGAATTTGGGCTTCCCACAG
CAGCGCTTGTGGAGCCAGTCGCCAGATCTGTGGAATGCGGATGCCTTACA
AAGAGCAACGGAGGGGGTCATTGCCATGTTGTTGGCGCTGAAGAAGAATC
CGCTGATCCGTTACGAAAAGAACAGTCTGCTAGCGAAGAAGTTGGCCACA
GAGGTCCGCTATCAAGTGACGCAGGAAGAGCAGCTCTTCAATTTCCGCAA
GACCGATACACCCCCGATCCTGTTGATTTTGGACCGTAGAGACGACCCCA
TCACTCCGCTACTGACCCAGTGGACCTACCAAGCGATGGTGCATGAGTTG
ATGGGCATTCACAATGGGCGCGTGGACCTCCGGGACGTACCGGAGATTCG
ACCGGAATTGCGTGAAATCGTCCTTTCCCAGGATCAAGATCCGTTCTTCA
AGAAGAATATGTACCAGAACTTTGGTGATCTAGGCCAGAACATCAAGGAG
TATGTTGAGCAGTACCAGGTCAAAACGCAAAACACGATGAACATCGAGTC
GATTGCGGACATGAAGCGCTTCGTGGAGGACTATCCCGAGTTTCGTAAAC
TATCGGGCAATGTGAGTAAACATGTCACACTAGTGGGGGAGCTGAGTCGG
CGCGTGGGTGAGGATGACCTGCTCGACGTCAGTGAGTTGGAGCAGAGCTT
GGCTTGCAATGACAACCACGCCAATGACCTCAAGAACCTACAACGAATCA
TTCAACTACCTAGCGTTCCTGCAGAGAACAAGTTGCGCTTGGTTGCTCTG
TACGCCATCCGCTACGAGAAGCAACCGAACAATGCACTCCCGATCCTGCT
CGATCTCCTCGTCACCGCCGGCAACGTCCCATCATACAAGGTCAACATTA
TCCCTAAACTCCTCGCCTACCACCACTCCTTACAAGCCCCGCCGGTCGCA
GGCGGCTTTTCTGACCTCTTCGAATCCACATCCCTCTTCTCCGGTGCCCG
AGACCGGTTCAAGGGTCTGAAAGGCGTCGAAAACGTCTACACCCAGCACT
CGCCTCGCCTGGAAGCCACTCTCCAAAATCTGATTAAAGGACGCCTGAAG
GAGCTGCAATACCCGTTTCTCGAAGGCGGGGGCCATACACGAGACAAGCC
CCAAGATATCATCATTTTCATGGTGGGCGGGGCGACGTATGAGGAAGCGA
AAATGGTCGCCCAAGTCAATGCCAGCTCACCTGGAGTAAGAGTCGTCTTA
GGAGGCACCTCCATTCACAATAGCACAAGCTTCCTTGAGGAAGTCGATGA
TGCCGTGAGCGGCTGGCCTGAGCCCGCCCCCTCGTCCGCCGCTGGTCGGC
TTCAGAGGGCAGTCGGACATTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006904 | vesicle docking involved in exocytosis |
| GO:0016192 | vesicle-mediated transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003817-T1.utr5p1 | KJC3_003817-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003817-T1.utr3p1 | KJC3_003817-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036045 |
| DBxref | InterPro:IPR001619 |
| DBxref | InterPro:IPR027482 |
| DBxref | InterPro:IPR043127 |
| DBxref | InterPro:IPR043154 |
| DBxref | PFAM:PF00995 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3129875..3132269 + |
|
