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KJC3_003820-T1, KJC3_003820-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003820-T1
Unique NameKJC3_003820-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:3143671..3145053+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003820-T1 ID=KJC3_003820-T1|Name=KJC3_003820-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1383bp|location=Sequence derived from alignment at ch3:3143671..3145053+ (Aspergillus niger KJC3)
AGAGGTCTCAATTCAGCTGCGTCGTCTCTACTGCAGCAATTTCTGGCCAT
CATCCGAGGGAGTAACACGTTTCAGACGGCGACCTCATGGCGGGCACACC
TGACGCCTCGATGGAGGAAATCCTCTGGCGGTCCCCGCCCCACGTCCAAA
TGATGGGAGGATATCTCCACTCCAACAACAGTATGAGATTTGGATCCTAT
AACAACAGAAGCAGCCAACTAACACTGTTAATGTATAAACAGTTCTTTTC
TACTTCGCAGAGTCACCATTTTTTGACCCGACGTCGAATAACGCCTCACT
GGCCATCCAAGCGAACTACAATGAAGCTTTCCGGCACTTTGTGGAGACGC
GCGAGGCCTTCGAGGGCCGCCTGAAGACTATGCAGGGCTTGGAATTCGTG
GTTTCATATGATCCCATTCAGGCAGCAGCACAACCTGATGGTCGATTTGC
ACACGAGCCGTCGAACATTTGGGTGATTCGCAAGCAGAACCGGCGCAAGA
GGACCGGCCTGGACGATGAGGTGGCGGTTTTATCAACGTACTTTATCGTG
GGAGACTGCATCTACATGGCCCCGTCGGTTGCGAGTGTAGTGGGAAACCG
CATCGTACGTCACATCGGATCTTGTTTTGCTTCCAGTATATCCTATAATG
CTGATGCTAACCCCGACTTCTTGCGCAGCTGTCCGCAGTTACGTCTCTCA
CCAGCTTGCTAAAGACAGCATCTACACTCCCAACCTTCACCCCGTCCCAT
GGCCATACTTACATGCCGCCTGCACTCAAGCAAGCAGACGCAAGTCAACC
TGGCACCCAATCGCAGCAGAGCAAGGAAAACACACCACTGCCAGACGCCG
ATGCAGCTGGCAAAGCCTCACTCGTTGGATCTTCACAGATGGTCGGCGCT
GGTTCTAGCCTGCAAGACACGCGGACACTCGCAGAGTCATTCAATCTGCT
CCGAAGGTATGGGGATGAGTTCATGGACGAACATCCGTTGGTGGGAGAGC
CCGGATCATTCATCCTATCCCGAGTCAATGACACAGACCGAACCTCGGCG
GCGAAACCGCCAGCCACTGCCGCGAAGGTTGGAACGCCGCAGGTCCGGGT
TGATACACCGGGAAAGGTATCAGAGAAGGGGGCGACGCCATCGGGGTCCG
AAGAGAATAAAATGCGGAAGAAGAAAACTAAGGTTGGCAGTTGAAGTGGG
AGGACAGAATAATGATACCCTAATGATCATGAGAGCAGGATTCTCTCATC
CCAATTCCATTCTAGACCTGGATAGCTAGATCTCTTATTCAATCTACAAT
TGAATTTGGCTCTTACCATCCTCTCCTTTTTACCGGCTTATCACCATAGA
ACCCTTTCTGTAACAGAAGCAAGGACAGCAGAG
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Coding sequence (CDS) from alignment at ch3:3143671..3145053+

>KJC3_003820-T1 ID=KJC3_003820-T1|Name=KJC3_003820-T1|organism=Aspergillus niger KJC3|type=CDS|length=2916bp|location=Sequence derived from alignment at ch3:3143671..3145053+ (Aspergillus niger KJC3)
ATGGCGGGCACACCTGACGCCTCGATGGAGGAAATCCTCTGGCGGTCCCC
GCCCCACGTCCAAATGATGGGAGGATATCTCCACTCCAACAACATTCTTT
TCTACTTCGCAGAGTCACCATTTTTTGACCCGACGTCGAATAACGCCTCA
CTGGCCATCCAAGCGAACTACAATGAAGCTTTCCGGCACTTTGTGGAGAC
GCGCGAGGCCTTCGAGGGCCGCCTGAAGACTATGCAGGGCTTGGAATTCG
TGGTTTCATATGATCCCATTCAGGCAGCAGCACAACCTGATGGTCGATTT
GCACACGAGCCGTCGAACATTTGGGTGATTCGCAAGCAGAACCGGCGCAA
GAGGACCGGCCTGGACGATGAGGTGGCGGTTTTATCAACGTACTTTATCG
TGGGAGACTGCATCTACATGGCCCCGTCGGTTGCGAGTGTAGTGGGAAAC
CGCATCCTGTCCGCAGTTACGTCTCTCACCAGCTTGCTAAAGACAGCATC
TACACTCCCAACCTTCACCCCGTCCCATGGCCATACTTACATGCCGCCTG
CACTCAAGCAAGCAGACGCAAGTCAACCTGGCACCCAATCGCAGCAGAGC
AAGGAAAACACACCACTGCCAGACGCCGATGCAGCTGGCAAAGCCTCACT
CGTTGGATCTTCACAGATGGTCGGCGCTGGTTCTAGCCTGCAAGACACGC
GGACACTCGCAGAGTCATTCAATCTGCTCCGAAGGTATGGGGATGAGTTC
ATGGACGAACATCCGTTGGTGGGAGAGCCCGGATCATTCATCCTATCCCG
AGTCAATGACACAGACCGAACCTCGGCGGCGAAACCGCCAGCCACTGCCG
CGAAGGTTGGAACGCCGCAGGTCCGGGTTGATACACCGGGAAAGGTATCA
GAGAAGGGGGCGACGCCATCGGGGTCCGAAGAGAATAAAATGCGGAAGAA
GAAAACTAAGGTTGGCAGTTGAATGGCGGGCACACCTGACGCCTCGATGG
AGGAAATCCTCTGGCGGTCCCCGCCCCACGTCCAAATGATGGGAGGATAT
CTCCACTCCAACAACATTCTTTTCTACTTCGCAGAGTCACCATTTTTTGA
CCCGACGTCGAATAACGCCTCACTGGCCATCCAAGCGAACTACAATGAAG
CTTTCCGGCACTTTGTGGAGACGCGCGAGGCCTTCGAGGGCCGCCTGAAG
ACTATGCAGGGCTTGGAATTCGTGGTTTCATATGATCCCATTCAGGCAGC
AGCACAACCTGATGGTCGATTTGCACACGAGCCGTCGAACATTTGGGTGA
TTCGCAAGCAGAACCGGCGCAAGAGGACCGGCCTGGACGATGAGGTGGCG
GTTTTATCAACGTACTTTATCGTGGGAGACTGCATCTACATGGCCCCGTC
GGTTGCGAGTGTAGTGGGAAACCGCATCCTGTCCGCAGTTACGTCTCTCA
CCAGCTTGCTAAAGACAGCATCTACACTCCCAACCTTCACCCCGTCCCAT
GGCCATACTTACATGCCGCCTGCACTCAAGCAAGCAGACGCAAGTCAACC
TGGCACCCAATCGCAGCAGAGCAAGGAAAACACACCACTGCCAGACGCCG
ATGCAGCTGGCAAAGCCTCACTCGTTGGATCTTCACAGATGGTCGGCGCT
GGTTCTAGCCTGCAAGACACGCGGACACTCGCAGAGTCATTCAATCTGCT
CCGAAGGTATGGGGATGAGTTCATGGACGAACATCCGTTGGTGGGAGAGC
CCGGATCATTCATCCTATCCCGAGTCAATGACACAGACCGAACCTCGGCG
GCGAAACCGCCAGCCACTGCCGCGAAGGTTGGAACGCCGCAGGTCCGGGT
TGATACACCGGGAAAGGTATCAGAGAAGGGGGCGACGCCATCGGGGTCCG
AAGAGAATAAAATGCGGAAGAAGAAAACTAAGGTTGGCAGTTGAATGGCG
GGCACACCTGACGCCTCGATGGAGGAAATCCTCTGGCGGTCCCCGCCCCA
CGTCCAAATGATGGGAGGATATCTCCACTCCAACAACATTCTTTTCTACT
TCGCAGAGTCACCATTTTTTGACCCGACGTCGAATAACGCCTCACTGGCC
ATCCAAGCGAACTACAATGAAGCTTTCCGGCACTTTGTGGAGACGCGCGA
GGCCTTCGAGGGCCGCCTGAAGACTATGCAGGGCTTGGAATTCGTGGTTT
CATATGATCCCATTCAGGCAGCAGCACAACCTGATGGTCGATTTGCACAC
GAGCCGTCGAACATTTGGGTGATTCGCAAGCAGAACCGGCGCAAGAGGAC
CGGCCTGGACGATGAGGTGGCGGTTTTATCAACGTACTTTATCGTGGGAG
ACTGCATCTACATGGCCCCGTCGGTTGCGAGTGTAGTGGGAAACCGCATC
CTGTCCGCAGTTACGTCTCTCACCAGCTTGCTAAAGACAGCATCTACACT
CCCAACCTTCACCCCGTCCCATGGCCATACTTACATGCCGCCTGCACTCA
AGCAAGCAGACGCAAGTCAACCTGGCACCCAATCGCAGCAGAGCAAGGAA
AACACACCACTGCCAGACGCCGATGCAGCTGGCAAAGCCTCACTCGTTGG
ATCTTCACAGATGGTCGGCGCTGGTTCTAGCCTGCAAGACACGCGGACAC
TCGCAGAGTCATTCAATCTGCTCCGAAGGTATGGGGATGAGTTCATGGAC
GAACATCCGTTGGTGGGAGAGCCCGGATCATTCATCCTATCCCGAGTCAA
TGACACAGACCGAACCTCGGCGGCGAAACCGCCAGCCACTGCCGCGAAGG
TTGGAACGCCGCAGGTCCGGGTTGATACACCGGGAAAGGTATCAGAGAAG
GGGGCGACGCCATCGGGGTCCGAAGAGAATAAAATGCGGAAGAAGAAAAC
TAAGGTTGGCAGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MED6KJC3_003820Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003820-T1KJC3_003820-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003820-T1.utr5p1KJC3_003820-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003820-T1.exon1KJC3_003820-T1.exon1Aspergillus niger KJC3exon
KJC3_003820-T1.exon2KJC3_003820-T1.exon2Aspergillus niger KJC3exon
KJC3_003820-T1.exon3KJC3_003820-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003820-T1.cdsKJC3_003820-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003820-T1.utr3p1KJC3_003820-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264S40
DBxrefInterPro:IPR007018
DBxrefInterPro:IPR016612
DBxrefInterPro:IPR038566
DBxrefPFAM:PF04934
ProductMediator of RNA polymerase II transcription subunit 6
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:3143671..3145053 +
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