You are here

Home

KJC3_003836-T1, KJC3_003836-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003836-T1
Unique NameKJC3_003836-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:3186821..3188347+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003836-T1 ID=KJC3_003836-T1|Name=KJC3_003836-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1527bp|location=Sequence derived from alignment at ch3:3186821..3188347+ (Aspergillus niger KJC3)
CCCGGATGGGTCCCTCTCTCGCATGCAATCTCATCCCTGACAAACGCTCC
TCCGCGGTTTTCGCCTTGCAGCTTATTTCTCGACTGTGCCAGTCGATCGC
GCCCAGAGCTCAATTCATTCAAAGCCTCAGGCCGCCGGAGGACGACGAGT
TGGCGCACCACCTCAACACCATTTAACCTTAAAGCGTCATTGACTCGCCC
GGCGCGAAGGAGCTCTACAAAGCTACCCCTCTTTCGCCCCTCTCGCCTTG
AACACCCCAACCGGCCAATTGCTCGCCCAAGCGCTAAACAAGTCAATATG
CCTCCCAAGACAGGCGGTCGCGGTCGCAAGAGCATTGTGGCGGCGCCGCG
ACAATCAACAGCTGGCGACCGTGCTGCCGCAAGCTCGTCGAAAGCAGCTG
CAACGACGTCGCCGGCAGCTAAAAAAGTGCGCAAATCCACTGGACCGGCT
AGGGGAGGGAAAAGGCCTGCTGGAAAGGCACCCAGAGAGTCCGACGTTCA
GCGTGCGTACCCCCACCTTCAATCCAAAATCCTCTCTGCGCTCTCTCTCT
CTCCTGAAGAATGAAAATTGACATCCTCGCAGCTGGTGATCCCACACCAC
AAGGACGTGTACGCCGCTACAAGCCTGGAACCGTGGCTCTCAAAGAGATC
CGCAAGTACCAGCGCTCTTATGATCTGCTTATCCAAAAGCTTCCTTTTGC
TCGGCTGGTCCGCGAGGTCGCTCTTGACCTCCTCCCTTCAGAAGTTGGCG
CCGAGCTGCGGTGGCAGTCGCATGCGATCCAAGCGCTCCAAGAAGCAGCC
GAAGCTTTCCTTGTACATCTCTTCGAGGACACCAACCTCTGTGCTATTCA
CGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGACGCA
TTCGTGGTGTCTGGGGTGGTTTGGGCTAAAAGTCTTCCGTTACCCTTGCA
ATTGATCGAAAGGAGAAGAAGTCAAGAAAAGAAAGAAATCGAGACAAAAC
GCCCAAAACAAAAGCGAGTTTCTCTACTTTCACAATCTACCTACTCTACC
CTACCACCTCTCTGATCTCATCACTCTATCTTACTTCTCTCCTTTTCGAA
TTTTTTATAATCAAGCAGTGGGCGTTCATCATCACTTTTTGCTGCCAATT
GGTGTTGTATAGGGTTGCAGGCGTATGGGAAGGTTACGGGGTCTTGAGGC
GAACCGCGGGGTCTTTCTTTGTTTTTGATGCTGTTACAAACTTCTCACCG
ATTTTGATCTCATTTTATCTACCTACCTACCTCTTGTTTGATTGATTGTT
GACTCTATGCCGTTGACTACCGGCTGGGTCACGTGTGCGTGTACAATACA
ACCTACTTATGTCCGTTGAATCGAACATGAGAGGTGTACTATCTATTCCA
TTTCATATATGGTCGAATCGGATCGATCATCCTGTGTATGCCAAGTCCTT
CATGGATGCACTTGGATGTCTGATGTTATTGATCAAGAATCAAAAGAATC
AAAGTCACCTGAAACCGGGATCTTATT
back to top

Coding sequence (CDS) from alignment at ch3:3186821..3188347+

>KJC3_003836-T1 ID=KJC3_003836-T1|Name=KJC3_003836-T1|organism=Aspergillus niger KJC3|type=CDS|length=1104bp|location=Sequence derived from alignment at ch3:3186821..3188347+ (Aspergillus niger KJC3)
ATGCCTCCCAAGACAGGCGGTCGCGGTCGCAAGAGCATTGTGGCGGCGCC
GCGACAATCAACAGCTGGCGACCGTGCTGCCGCAAGCTCGTCGAAAGCAG
CTGCAACGACGTCGCCGGCAGCTAAAAAAGTGCGCAAATCCACTGGACCG
GCTAGGGGAGGGAAAAGGCCTGCTGGAAAGGCACCCAGAGAGTCCGACGT
TCAGCCTGGTGATCCCACACCACAAGGACGTGTACGCCGCTACAAGCCTG
GAACCGTGGCTCTCAAAGAGATCCGCAAGTACCAGCGCTCTTATGATCTG
CTTATCCAAAAGCTTCCTTTTGCTCGGCTGGTCCGCGAGGTCGCTCTTGA
CCTCCTCCCTTCAGAAGTTGGCGCCGAGCTGCGGTGGCAGTCGCATGCGA
TCCAAGCGCTCCAAGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCGAG
GACACCAACCTCTGTGCTATTCACGCCAAGCGCGTGACCATCATGCAGAA
AGATATCCAACTTGCTCGACGCATTCGTGGTGTCTGGGGTGGTTTGGGCT
AAATGCCTCCCAAGACAGGCGGTCGCGGTCGCAAGAGCATTGTGGCGGCG
CCGCGACAATCAACAGCTGGCGACCGTGCTGCCGCAAGCTCGTCGAAAGC
AGCTGCAACGACGTCGCCGGCAGCTAAAAAAGTGCGCAAATCCACTGGAC
CGGCTAGGGGAGGGAAAAGGCCTGCTGGAAAGGCACCCAGAGAGTCCGAC
GTTCAGCCTGGTGATCCCACACCACAAGGACGTGTACGCCGCTACAAGCC
TGGAACCGTGGCTCTCAAAGAGATCCGCAAGTACCAGCGCTCTTATGATC
TGCTTATCCAAAAGCTTCCTTTTGCTCGGCTGGTCCGCGAGGTCGCTCTT
GACCTCCTCCCTTCAGAAGTTGGCGCCGAGCTGCGGTGGCAGTCGCATGC
GATCCAAGCGCTCCAAGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCG
AGGACACCAACCTCTGTGCTATTCACGCCAAGCGCGTGACCATCATGCAG
AAAGATATCCAACTTGCTCGACGCATTCGTGGTGTCTGGGGTGGTTTGGG
CTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
HH3VKJC3_003836Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003836-T1.utr5p1KJC3_003836-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003836-T1.exon1KJC3_003836-T1.exon1Aspergillus niger KJC3exon
KJC3_003836-T1.exon2KJC3_003836-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003836-T1.cdsKJC3_003836-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003836-T1.utr3p1KJC3_003836-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003836-T1KJC3_003836-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR007125
DBxrefInterPro:IPR000164
DBxrefPFAM:PF00125
ProductHistone H3-like centromeric protein hH3v
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:3186821..3188347 +
Powered by Drupal