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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3210064..3211201- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003845-T1 ID=KJC3_003845-T1|Name=KJC3_003845-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1138bp|location=Sequence derived from alignment at ch3:3210064..3211201- (Aspergillus niger KJC3)
ATGGCTATCTCAGACCTACTGAATCGCCGTGTGCGAGCTGTCGCTCAGGA
CGACGAGGAGCTTTACTCTGACCAGTCTGGCTCGGATCAGGCGAGCGACG
ATCTCCGCTCTGACGAGTCAGGCTCAGAAAGTGGCAGTGATGGTTCCCTA
GACGAAGACGACGACGACGATGTGGTTAGTTTCCCCTCGTTTGGATAGAC
ATTGCAACATGCTGACTATCTCACAGTCTCAAGGCGACCCGGAAGATATG
GATGATGACGACGATGACGACGATGACGACGACGAAGATGACGAAGACGA
CAATGATGATGCCCAGGACGACGTTCAAGCCTCACTAAGCAGTATCTCGT
TCGGCGCATTGGCGAAAGCGCAAGCATCTATAGGACCCAAATCAAAGCGG
TCGTCCAAGGCCTCCCGGACAGAAGACGAGCCTGCCGCTCCTTCCCCCTT
AGACGACATTCGGGCGCGGATTCAAGAGGCACGCGAACAGAAACGCCAAG
CGCTGGCGAAAAATAAGGATTCGGAAAAGCTCTCTCGTTCCTCCAAGCAT
GCGCCGGCCGTACAATCCTCCAAACATGCCGTCTCCCGCAAACGGACCAT
CATTGAGCCGCCAAGTGTACCCAAGTCGCGAGACCCCCGTTTTGACCCGA
CTGTCCTGAGCCAGGGTGGTCGCGGAAACCCTCAAGGAACGAGCAACGCT
TACGCATTCTTGGACGAGTATCGCCGGGACGAACTGAAGCAGTTGAAGGA
ACAATACGCCAAGACGAAGAACCAAGAACAGAAAGAAGCTCTGAAGCGTA
CGATTCGGTCGACTCAAGACCGTCTTCGAGCGATGGAGAATAGGAAACGC
GAGAAGGAGATCTTAGCGGAGCATAAGAAGAAGGAGAAACAGCTCATCCG
CGAAGGAAAGAAGAGCAACCCGTACTTCTTGAAGAAGTCGGACCTGAAGA
AGCAGGTGCTGCTCAAGAAGTACGAGAATATGAACTCCAAGGACCGCACC
AAGGCACTCGAGAGGAAGCGCAAGAAGACTGCCGCCAAGGAAAGAAAGGA
GATGCCCATGGAGCGGAGAGCCTTGGCTGGCGACGATGCGCCGAGTGGCG
GTGGAGGTGGCGGCTGGAAACGCCGCAGAGTTGCATAG back to topCoding sequence (CDS) from alignment at ch3:3210064..3211201- >KJC3_003845-T1 ID=KJC3_003845-T1|Name=KJC3_003845-T1|organism=Aspergillus niger KJC3|type=CDS|length=2172bp|location=Sequence derived from alignment at ch3:3210064..3211201- (Aspergillus niger KJC3)
TCTCAAGGCGACCCGGAAGATATGGATGATGACGACGATGACGACGATGA
CGACGACGAAGATGACGAAGACGACAATGATGATGCCCAGGACGACGTTC
AAGCCTCACTAAGCAGTATCTCGTTCGGCGCATTGGCGAAAGCGCAAGCA
TCTATAGGACCCAAATCAAAGCGGTCGTCCAAGGCCTCCCGGACAGAAGA
CGAGCCTGCCGCTCCTTCCCCCTTAGACGACATTCGGGCGCGGATTCAAG
AGGCACGCGAACAGAAACGCCAAGCGCTGGCGAAAAATAAGGATTCGGAA
AAGCTCTCTCGTTCCTCCAAGCATGCGCCGGCCGTACAATCCTCCAAACA
TGCCGTCTCCCGCAAACGGACCATCATTGAGCCGCCAAGTGTACCCAAGT
CGCGAGACCCCCGTTTTGACCCGACTGTCCTGAGCCAGGGTGGTCGCGGA
AACCCTCAAGGAACGAGCAACGCTTACGCATTCTTGGACGAGTATCGCCG
GGACGAACTGAAGCAGTTGAAGGAACAATACGCCAAGACGAAGAACCAAG
AACAGAAAGAAGCTCTGAAGCGTACGATTCGGTCGACTCAAGACCGTCTT
CGAGCGATGGAGAATAGGAAACGCGAGAAGGAGATCTTAGCGGAGCATAA
GAAGAAGGAGAAACAGCTCATCCGCGAAGGAAAGAAGAGCAACCCGTACT
TCTTGAAGAAGTCGGACCTGAAGAAGCAGGTGCTGCTCAAGAAGTACGAG
AATATGAACTCCAAGGACCGCACCAAGGCACTCGAGAGGAAGCGCAAGAA
GACTGCCGCCAAGGAAAGAAAGGAGATGCCCATGGAGCGGAGAGCCTTGG
CTGGCGACGATGCGCCGAGTGGCGGTGGAGGTGGCGGCTGGAAACGCCGC
AGAGTTGCATAGATGGCTATCTCAGACCTACTGAATCGCCGTGTGCGAGC
TGTCGCTCAGGACGACGAGGAGCTTTACTCTGACCAGTCTGGCTCGGATC
AGGCGAGCGACGATCTCCGCTCTGACGAGTCAGGCTCAGAAAGTGGCAGT
GATGGTTCCCTAGACGAAGACGACGACGACGATGTGTCTCAAGGCGACCC
GGAAGATATGGATGATGACGACGATGACGACGATGACGACGACGAAGATG
ACGAAGACGACAATGATGATGCCCAGGACGACGTTCAAGCCTCACTAAGC
AGTATCTCGTTCGGCGCATTGGCGAAAGCGCAAGCATCTATAGGACCCAA
ATCAAAGCGGTCGTCCAAGGCCTCCCGGACAGAAGACGAGCCTGCCGCTC
CTTCCCCCTTAGACGACATTCGGGCGCGGATTCAAGAGGCACGCGAACAG
AAACGCCAAGCGCTGGCGAAAAATAAGGATTCGGAAAAGCTCTCTCGTTC
CTCCAAGCATGCGCCGGCCGTACAATCCTCCAAACATGCCGTCTCCCGCA
AACGGACCATCATTGAGCCGCCAAGTGTACCCAAGTCGCGAGACCCCCGT
TTTGACCCGACTGTCCTGAGCCAGGGTGGTCGCGGAAACCCTCAAGGAAC
GAGCAACGCTTACGCATTCTTGGACGAGTATCGCCGGGACGAACTGAAGC
AGTTGAAGGAACAATACGCCAAGACGAAGAACCAAGAACAGAAAGAAGCT
CTGAAGCGTACGATTCGGTCGACTCAAGACCGTCTTCGAGCGATGGAGAA
TAGGAAACGCGAGAAGGAGATCTTAGCGGAGCATAAGAAGAAGGAGAAAC
AGCTCATCCGCGAAGGAAAGAAGAGCAACCCGTACTTCTTGAAGAAGTCG
GACCTGAAGAAGCAGGTGCTGCTCAAGAAGTACGAGAATATGAACTCCAA
GGACCGCACCAAGGCACTCGAGAGGAAGCGCAAGAAGACTGCCGCCAAGG
AAAGAAAGGAGATGCCCATGGAGCGGAGAGCCTTGGCTGGCGACGATGCG
CCGAGTGGCGGTGGAGGTGGCGGCTGGAAACGCCGCAGAGTTGCATAGAT
GGCTATCTCAGACCTACTGAATCGCCGTGTGCGAGCTGTCGCTCAGGACG
ACGAGGAGCTTTACTCTGACCAGTCTGGCTCGGATCAGGCGAGCGACGAT
CTCCGCTCTGACGAGTCAGGCTCAGAAAGTGGCAGTGATGGTTCCCTAGA
CGAAGACGACGACGACGATGTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000469 | cleavage involved in rRNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265M98 |
| DBxref | InterPro:IPR009292 |
| DBxref | PFAM:PF06102 |
| Product | rRNA bioproteinsis protein rrp36 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3210064..3211201 - |
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