|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3249123..3250517+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003859-T1 ID=KJC3_003859-T1|Name=KJC3_003859-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1395bp|location=Sequence derived from alignment at ch3:3249123..3250517+ (Aspergillus niger KJC3)
GTCCGCAGCCTCGAAATTTTGACCAGCCTGTAACCACACCTTCTCAAGTA
GTGGTCCCTTATTCTTTTTTCCGTCATTGAGCCAGATACCCCCAGATACC
CCCCCTCTGCACATCATGATTTCCATCGGTCTGGAGAGCTCCGCCAACAA
ACTGGGCGTGGGCATCATGGTGCATCCCGACGATGGCAAGCCCCCGCAGG
TGCTGGCCAATGTTCGGCACACCTATGTCACCCCTCCGGGTGAAGGATTC
CTTCCCAAGGACACCGCCCGTCACCACCGCGCCTGGGTCGTGAAGCTGGT
CAAGAAGGCTCTTCGTGAAGCTCGGATCTCCCCCAAGGATGTGGATTGCA
TCTGCTTCACCAAGGGCCCCGGCATGGGAGCCCCTCTTCAGAGCGCCGCC
ATTGCGGCCCGCATGTTGAGTCTACTATGGGGCAAGGAATTGGTGGGCGT
GAATCACTGTGTTGGACGTATGTGTTATGCCTAGTACTTGATCGGTTTAT
TTATCTATCAGTCCCCTATCCTATCTGCACCGTGCGGGGAACCCTTTTGC
CCCTTCTCATCCCTTGCATAGCTTGGCCCTCCTATTGCAACCATCGCTGA
CAATGTCCCGGTTGTATATATAGATATTGAAATGGGTCGATTGATTACCG
GTGCTACAAATCCCGTCGTCCTCTACGTCTCCGGAGGAAATACCCAAGTC
ATCGCATACAGCTCTCAACGGTACCGCATCTTCGGCGAGACCTTGGATAT
CGCAGTAGGAAACTGCTTAGACCGCTTTGCGCGCACGCTGCGCATTTCCA
ACGATCCCGCCCCAGGATATAACATCGAACAATTAGCCAAGAAGGGTAGG
AAACTGGTCGATCTACCGTACACGGTCAAGGGAATGGACATTTCCATGTC
CGGTATCTTGGCGGCCATTGATGGACTAGCAGTGCAGTATGGCTTGGACG
GAGACTGGAATGACGACGAGGATGTTGCTAACAATGCATCTACATCGGAC
GATCTGGAGAACGCGAAACCGACGCGTGCAGATCTATGCTTCTCGCTCCA
GGAAACGGTTTACTCCATGCTGGTCGAGATCACAGAGCGCGCCATGGCAC
ATGTCGGCTCCAAGGATGTTCTGATCGTCGGTGGAGTGGGCTGTAATGAG
CGCCTGCAGGAAATGATGGGCATCATGGCTCGCGACCGCGGCGGTACCAT
TCATGCGACCGACGAGAGGTTCTGTATTGATAACGGCATCATGATCGCGC
AGGCTGGATTACTGGCATATAAGTCCGGTAGCACAACGCCCTTGAAGGAT
TCCACTTGTACTCAGCGCTTCCGGACGGACGATGTCTTTGTCAAATGGAG
GGATTGATTTTCTATTTCTTGTTCCATTGGATGATGATGATTTAG back to topCoding sequence (CDS) from alignment at ch3:3249123..3250517+ >KJC3_003859-T1 ID=KJC3_003859-T1|Name=KJC3_003859-T1|organism=Aspergillus niger KJC3|type=CDS|length=2172bp|location=Sequence derived from alignment at ch3:3249123..3250517+ (Aspergillus niger KJC3)
ATGATTTCCATCGGTCTGGAGAGCTCCGCCAACAAACTGGGCGTGGGCAT
CATGGTGCATCCCGACGATGGCAAGCCCCCGCAGGTGCTGGCCAATGTTC
GGCACACCTATGTCACCCCTCCGGGTGAAGGATTCCTTCCCAAGGACACC
GCCCGTCACCACCGCGCCTGGGTCGTGAAGCTGGTCAAGAAGGCTCTTCG
TGAAGCTCGGATCTCCCCCAAGGATGTGGATTGCATCTGCTTCACCAAGG
GCCCCGGCATGGGAGCCCCTCTTCAGAGCGCCGCCATTGCGGCCCGCATG
TTGAGTCTACTATGGGGCAAGGAATTGGTGGGCGTGAATCACTGTGTTGG
ACATATTGAAATGGGTCGATTGATTACCGGTGCTACAAATCCCGTCGTCC
TCTACGTCTCCGGAGGAAATACCCAAGTCATCGCATACAGCTCTCAACGG
TACCGCATCTTCGGCGAGACCTTGGATATCGCAGTAGGAAACTGCTTAGA
CCGCTTTGCGCGCACGCTGCGCATTTCCAACGATCCCGCCCCAGGATATA
ACATCGAACAATTAGCCAAGAAGGGTAGGAAACTGGTCGATCTACCGTAC
ACGGTCAAGGGAATGGACATTTCCATGTCCGGTATCTTGGCGGCCATTGA
TGGACTAGCAGTGCAGTATGGCTTGGACGGAGACTGGAATGACGACGAGG
ATGTTGCTAACAATGCATCTACATCGGACGATCTGGAGAACGCGAAACCG
ACGCGTGCAGATCTATGCTTCTCGCTCCAGGAAACGGTTTACTCCATGCT
GGTCGAGATCACAGAGCGCGCCATGGCACATGTCGGCTCCAAGGATGTTC
TGATCGTCGGTGGAGTGGGCTGTAATGAGCGCCTGCAGGAAATGATGGGC
ATCATGGCTCGCGACCGCGGCGGTACCATTCATGCGACCGACGAGAGGTT
CTGTATTGATAACGGCATCATGATCGCGCAGGCTGGATTACTGGCATATA
AGTCCGGTAGCACAACGCCCTTGAAGGATTCCACTTGTACTCAGCGCTTC
CGGACGGACGATGTCTTTGTCAAATGGAGGGATTGAATGATTTCCATCGG
TCTGGAGAGCTCCGCCAACAAACTGGGCGTGGGCATCATGGTGCATCCCG
ACGATGGCAAGCCCCCGCAGGTGCTGGCCAATGTTCGGCACACCTATGTC
ACCCCTCCGGGTGAAGGATTCCTTCCCAAGGACACCGCCCGTCACCACCG
CGCCTGGGTCGTGAAGCTGGTCAAGAAGGCTCTTCGTGAAGCTCGGATCT
CCCCCAAGGATGTGGATTGCATCTGCTTCACCAAGGGCCCCGGCATGGGA
GCCCCTCTTCAGAGCGCCGCCATTGCGGCCCGCATGTTGAGTCTACTATG
GGGCAAGGAATTGGTGGGCGTGAATCACTGTGTTGGACATATTGAAATGG
GTCGATTGATTACCGGTGCTACAAATCCCGTCGTCCTCTACGTCTCCGGA
GGAAATACCCAAGTCATCGCATACAGCTCTCAACGGTACCGCATCTTCGG
CGAGACCTTGGATATCGCAGTAGGAAACTGCTTAGACCGCTTTGCGCGCA
CGCTGCGCATTTCCAACGATCCCGCCCCAGGATATAACATCGAACAATTA
GCCAAGAAGGGTAGGAAACTGGTCGATCTACCGTACACGGTCAAGGGAAT
GGACATTTCCATGTCCGGTATCTTGGCGGCCATTGATGGACTAGCAGTGC
AGTATGGCTTGGACGGAGACTGGAATGACGACGAGGATGTTGCTAACAAT
GCATCTACATCGGACGATCTGGAGAACGCGAAACCGACGCGTGCAGATCT
ATGCTTCTCGCTCCAGGAAACGGTTTACTCCATGCTGGTCGAGATCACAG
AGCGCGCCATGGCACATGTCGGCTCCAAGGATGTTCTGATCGTCGGTGGA
GTGGGCTGTAATGAGCGCCTGCAGGAAATGATGGGCATCATGGCTCGCGA
CCGCGGCGGTACCATTCATGCGACCGACGAGAGGTTCTGTATTGATAACG
GCATCATGATCGCGCAGGCTGGATTACTGGCATATAAGTCCGGTAGCACA
ACGCCCTTGAAGGATTCCACTTGTACTCAGCGCTTCCGGACGGACGATGT
CTTTGTCAAATGGAGGGATTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000408 | EKC/KEOPS complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0002949 | tRNA threonylcarbamoyladenosine modification |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003859-T1.utr5p1 | KJC3_003859-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003859-T1.utr3p1 | KJC3_003859-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926347W |
| DBxref | InterPro:IPR043129 |
| DBxref | InterPro:IPR034680 |
| DBxref | InterPro:IPR000905 |
| DBxref | InterPro:IPR017861 |
| DBxref | PFAM:PF00814 |
| Product | putative tRNA threonylcarbamoyladenosine biosynthesis protein kae1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3249123..3250517 + |
|
