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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3270831..3273500+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003870-T1 ID=KJC3_003870-T1|Name=KJC3_003870-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2670bp|location=Sequence derived from alignment at ch3:3270831..3273500+ (Aspergillus niger KJC3)
GTGAAGTCCGGTTGCGGAAGCATCAGTTTCTAGCTTCTCCCTTCCCCTTT
CCACCCCTTAACGCTTTAGGCCATCTGTTTGCAATGGCTTTTCGGGCTCG
CTCCGTCGCCCTTCTTCGTTGGGGGTTGGAGCCGAGATCATCCCAGCTGA
GTGTGCTGGGTAGGAGACGTGGGTTGGCGACAGTGTCAGATGGGACGCGG
TATGTTTTTCCATCCTGTACGTGGTTTTCTTTGGTGGTTAGGTGCTAATT
CTGGTTTGTTCACAGGGCATATGATGTGGTGGTCATTGGAGGAGGCCATG
CTGGCTCCGAAGCCTGTGCCGCGGCTGCTCGTTCAGGCGCCCGAACCGCA
TTAATCACGCCCTCGCTATCCAACATCGGTGTCTGTTCGTGTAATCCGAG
TTTCGGTGGAATCGGAAAGGGTACCATGATACGAGAAGTTGATGCGATGG
ACGGAGTCGCGGGACGAATTATTGATAAGGCCGGTATTATGTTTCGCACG
CTGAACCGATCCAAGGGCCCAGCTGTTTGGGGTCCCCGTGCTCAGATTGA
TCGCGATCTGTATAAGAAGTATATGCAGGAGGAGTTGCAGGGGACGGAAG
GATTGAGCATCGTCGAGGGTAAGGTTGCGGATATCGTGGTGTCGAAGGAT
GGGGTCGAGCATACTCCCGGGGCGCAGGGCAAGATTGTTGGTGTTAGGCT
GGAGTCTGGCGAGGTTATACCCACTGGCAAGGTGGTTATCACAACGGGCA
CGTTCTTGGGTGGGGAGATTCATATTGGGCTTGAAGCATACCCGTCTGGT
CGGATGGGTGAAGCTGCTACCTTCGGACTCAGTAAGTCCTTGCGGGATGC
CGGGTTCACGTTGGGTCGTTTGAAGACGGGCACACCTCCGCGGTTGGATA
GAAAGACGATCAATTTTGCGCCTCTGGAAGTTCAGGAGGGTGATCACCCC
CCGAGTCCGTTCTCCTATCTCAATGGCAGGGTTCAGGTCGACGATGAGGC
CCAGCTTACTTGCTGGATGACCTACACTAATGACGATGTTCACGATATTG
TCCGAGCGAACCTGGACAAGACCATTCACATCCGCGAGACCGTTAGGGGC
CCCAGATACTGTCCTTCGCTCGAGTCTAAGATCATCCGCTTCACCGATAA
GAAGCGCCATCTGATCTGGCTCGAGCCAGAGGGTTTCGCGCCAAACGACG
TCATCTACCCTAACGGTATCTCCATGACCATTCCCGCCGATGCCCAGTAC
GCCATGCTGCGAAAGGTCCACGGTCTCGAGAACGTGACCATGCTTCAACC
CGGCTACGGAGTCGAGTACGACTACATCGACCCGCGCAATCTCCGACCCA
CGCTCGAAACCAAACTCATCAGCGGTCTCTACCTTGCCGGTCAGATCAAC
GGTACCACCGGCTACGAAGAAGCCGCTGGACAAGGTATCATCGCTGGTAC
CAACGCTGGATTATCCGCCCAAGGTCGGGAACCGCTCACTCTCCGCCGGT
CCGACGCATTCATCGGCATCATGATCGACGACCTCATCACAAAGGGCGTC
TCCGAGCCCTACCGCATGTTCACAACGCGAAGCGAATACCGCATTACCAC
TCGCTCCGACAACGCCGATCTCCGTCTCACCCGGATGGCCCGCGAAGCCG
GAATCGTCTCCGACAAGCGCTGGCGACACTTCACGGAAACGGAAGCGCAA
ATCAACGAGCTTCAAACCCTCCTCGAGAACACCAAAATGTCCTCCTACGC
CTGGGCTCGCAAAGGCTTCAAGGCCCGCATCGACCCCTCTCAACGCTCCG
CTCTCGACCTCCTCTGTCTCCGCGAGAGCGATATTGACTCCCTCATCCCA
CATATTGAGTCCCCCACCGGCACCGTCTACTTTGCCTCTTCCTTCCCTCC
GGAGATCCGTAACCGTGTCTCCATTGAAGGCCGCTACGCTCCCTTTGTGA
TCCGCCAGGAAAACGCAGCCAAGAAATCCCTCCGCGACGAAAATTTGTCT
ATCCCTGCTGACTTGGACTATGCTACTGTTCAGGGCATCAGCATCGAGGA
AAAGCAGGCCCTGGAGCGCGTCCGTCCCGTCAGTATCGGCATGGCGAGGC
GCATCGAGGGCGTTACTCCGTCCGGTGTCCTGAGGGTGCTCATGCATGTG
CATAGGACCAGTAGGGATAGGACTGCTGCTTCTGCTCCTCCTGCTTCGGA
GGGGCTTGAGGAGACCCCTGATGATGTTATCAGCCAGGCACCTTGAAACT
GGCGGATAGATGATCACGTGTTTGTTTGATTACGGTGTTGGACGACGGCT
ATACTATACTATTGCATCACAGCGACGGGCGAATCGAGTCGACTGGACTA
GGCGTATTGGTGTTATTTCTGGACTCTTAGAACTGAAAAGATGGTTGGCT
TGGAGGCCCTGTTATGTATATTATACCTTTCATATCTTATTTTCGAGGCC
TATGTATATTATACTTTTCTCTGTGGATCTCGGATACGTGCATATACCAA
TTCATCTCTCTTTTTGTCTGTTTCTTCAGTGAGCGATCGATTCAATCACA
CGGTTCGTGGTGATATAACGAACTTAGTCTGGATTCTGTATCCGACCCGT
GAACCTTACATCGGGTGATGGGTTGTTGTTGCTACTGTATACTAATTGAG
AAACAAGATGATAAACAAAC back to topCoding sequence (CDS) from alignment at ch3:3270831..3273500+ >KJC3_003870-T1 ID=KJC3_003870-T1|Name=KJC3_003870-T1|organism=Aspergillus niger KJC3|type=CDS|length=4194bp|location=Sequence derived from alignment at ch3:3270831..3273500+ (Aspergillus niger KJC3)
ATGGCTTTTCGGGCTCGCTCCGTCGCCCTTCTTCGTTGGGGGTTGGAGCC
GAGATCATCCCAGCTGAGTGTGCTGGGTAGGAGACGTGGGTTGGCGACAG
TGTCAGATGGGACGCGGGCATATGATGTGGTGGTCATTGGAGGAGGCCAT
GCTGGCTCCGAAGCCTGTGCCGCGGCTGCTCGTTCAGGCGCCCGAACCGC
ATTAATCACGCCCTCGCTATCCAACATCGGTGTCTGTTCGTGTAATCCGA
GTTTCGGTGGAATCGGAAAGGGTACCATGATACGAGAAGTTGATGCGATG
GACGGAGTCGCGGGACGAATTATTGATAAGGCCGGTATTATGTTTCGCAC
GCTGAACCGATCCAAGGGCCCAGCTGTTTGGGGTCCCCGTGCTCAGATTG
ATCGCGATCTGTATAAGAAGTATATGCAGGAGGAGTTGCAGGGGACGGAA
GGATTGAGCATCGTCGAGGGTAAGGTTGCGGATATCGTGGTGTCGAAGGA
TGGGGTCGAGCATACTCCCGGGGCGCAGGGCAAGATTGTTGGTGTTAGGC
TGGAGTCTGGCGAGGTTATACCCACTGGCAAGGTGGTTATCACAACGGGC
ACGTTCTTGGGTGGGGAGATTCATATTGGGCTTGAAGCATACCCGTCTGG
TCGGATGGGTGAAGCTGCTACCTTCGGACTCAGTAAGTCCTTGCGGGATG
CCGGGTTCACGTTGGGTCGTTTGAAGACGGGCACACCTCCGCGGTTGGAT
AGAAAGACGATCAATTTTGCGCCTCTGGAAGTTCAGGAGGGTGATCACCC
CCCGAGTCCGTTCTCCTATCTCAATGGCAGGGTTCAGGTCGACGATGAGG
CCCAGCTTACTTGCTGGATGACCTACACTAATGACGATGTTCACGATATT
GTCCGAGCGAACCTGGACAAGACCATTCACATCCGCGAGACCGTTAGGGG
CCCCAGATACTGTCCTTCGCTCGAGTCTAAGATCATCCGCTTCACCGATA
AGAAGCGCCATCTGATCTGGCTCGAGCCAGAGGGTTTCGCGCCAAACGAC
GTCATCTACCCTAACGGTATCTCCATGACCATTCCCGCCGATGCCCAGTA
CGCCATGCTGCGAAAGGTCCACGGTCTCGAGAACGTGACCATGCTTCAAC
CCGGCTACGGAGTCGAGTACGACTACATCGACCCGCGCAATCTCCGACCC
ACGCTCGAAACCAAACTCATCAGCGGTCTCTACCTTGCCGGTCAGATCAA
CGGTACCACCGGCTACGAAGAAGCCGCTGGACAAGGTATCATCGCTGGTA
CCAACGCTGGATTATCCGCCCAAGGTCGGGAACCGCTCACTCTCCGCCGG
TCCGACGCATTCATCGGCATCATGATCGACGACCTCATCACAAAGGGCGT
CTCCGAGCCCTACCGCATGTTCACAACGCGAAGCGAATACCGCATTACCA
CTCGCTCCGACAACGCCGATCTCCGTCTCACCCGGATGGCCCGCGAAGCC
GGAATCGTCTCCGACAAGCGCTGGCGACACTTCACGGAAACGGAAGCGCA
AATCAACGAGCTTCAAACCCTCCTCGAGAACACCAAAATGTCCTCCTACG
CCTGGGCTCGCAAAGGCTTCAAGGCCCGCATCGACCCCTCTCAACGCTCC
GCTCTCGACCTCCTCTGTCTCCGCGAGAGCGATATTGACTCCCTCATCCC
ACATATTGAGTCCCCCACCGGCACCGTCTACTTTGCCTCTTCCTTCCCTC
CGGAGATCCGTAACCGTGTCTCCATTGAAGGCCGCTACGCTCCCTTTGTG
ATCCGCCAGGAAAACGCAGCCAAGAAATCCCTCCGCGACGAAAATTTGTC
TATCCCTGCTGACTTGGACTATGCTACTGTTCAGGGCATCAGCATCGAGG
AAAAGCAGGCCCTGGAGCGCGTCCGTCCCGTCAGTATCGGCATGGCGAGG
CGCATCGAGGGCGTTACTCCGTCCGGTGTCCTGAGGGTGCTCATGCATGT
GCATAGGACCAGTAGGGATAGGACTGCTGCTTCTGCTCCTCCTGCTTCGG
AGGGGCTTGAGGAGACCCCTGATGATGTTATCAGCCAGGCACCTTGAATG
GCTTTTCGGGCTCGCTCCGTCGCCCTTCTTCGTTGGGGGTTGGAGCCGAG
ATCATCCCAGCTGAGTGTGCTGGGTAGGAGACGTGGGTTGGCGACAGTGT
CAGATGGGACGCGGGCATATGATGTGGTGGTCATTGGAGGAGGCCATGCT
GGCTCCGAAGCCTGTGCCGCGGCTGCTCGTTCAGGCGCCCGAACCGCATT
AATCACGCCCTCGCTATCCAACATCGGTGTCTGTTCGTGTAATCCGAGTT
TCGGTGGAATCGGAAAGGGTACCATGATACGAGAAGTTGATGCGATGGAC
GGAGTCGCGGGACGAATTATTGATAAGGCCGGTATTATGTTTCGCACGCT
GAACCGATCCAAGGGCCCAGCTGTTTGGGGTCCCCGTGCTCAGATTGATC
GCGATCTGTATAAGAAGTATATGCAGGAGGAGTTGCAGGGGACGGAAGGA
TTGAGCATCGTCGAGGGTAAGGTTGCGGATATCGTGGTGTCGAAGGATGG
GGTCGAGCATACTCCCGGGGCGCAGGGCAAGATTGTTGGTGTTAGGCTGG
AGTCTGGCGAGGTTATACCCACTGGCAAGGTGGTTATCACAACGGGCACG
TTCTTGGGTGGGGAGATTCATATTGGGCTTGAAGCATACCCGTCTGGTCG
GATGGGTGAAGCTGCTACCTTCGGACTCAGTAAGTCCTTGCGGGATGCCG
GGTTCACGTTGGGTCGTTTGAAGACGGGCACACCTCCGCGGTTGGATAGA
AAGACGATCAATTTTGCGCCTCTGGAAGTTCAGGAGGGTGATCACCCCCC
GAGTCCGTTCTCCTATCTCAATGGCAGGGTTCAGGTCGACGATGAGGCCC
AGCTTACTTGCTGGATGACCTACACTAATGACGATGTTCACGATATTGTC
CGAGCGAACCTGGACAAGACCATTCACATCCGCGAGACCGTTAGGGGCCC
CAGATACTGTCCTTCGCTCGAGTCTAAGATCATCCGCTTCACCGATAAGA
AGCGCCATCTGATCTGGCTCGAGCCAGAGGGTTTCGCGCCAAACGACGTC
ATCTACCCTAACGGTATCTCCATGACCATTCCCGCCGATGCCCAGTACGC
CATGCTGCGAAAGGTCCACGGTCTCGAGAACGTGACCATGCTTCAACCCG
GCTACGGAGTCGAGTACGACTACATCGACCCGCGCAATCTCCGACCCACG
CTCGAAACCAAACTCATCAGCGGTCTCTACCTTGCCGGTCAGATCAACGG
TACCACCGGCTACGAAGAAGCCGCTGGACAAGGTATCATCGCTGGTACCA
ACGCTGGATTATCCGCCCAAGGTCGGGAACCGCTCACTCTCCGCCGGTCC
GACGCATTCATCGGCATCATGATCGACGACCTCATCACAAAGGGCGTCTC
CGAGCCCTACCGCATGTTCACAACGCGAAGCGAATACCGCATTACCACTC
GCTCCGACAACGCCGATCTCCGTCTCACCCGGATGGCCCGCGAAGCCGGA
ATCGTCTCCGACAAGCGCTGGCGACACTTCACGGAAACGGAAGCGCAAAT
CAACGAGCTTCAAACCCTCCTCGAGAACACCAAAATGTCCTCCTACGCCT
GGGCTCGCAAAGGCTTCAAGGCCCGCATCGACCCCTCTCAACGCTCCGCT
CTCGACCTCCTCTGTCTCCGCGAGAGCGATATTGACTCCCTCATCCCACA
TATTGAGTCCCCCACCGGCACCGTCTACTTTGCCTCTTCCTTCCCTCCGG
AGATCCGTAACCGTGTCTCCATTGAAGGCCGCTACGCTCCCTTTGTGATC
CGCCAGGAAAACGCAGCCAAGAAATCCCTCCGCGACGAAAATTTGTCTAT
CCCTGCTGACTTGGACTATGCTACTGTTCAGGGCATCAGCATCGAGGAAA
AGCAGGCCCTGGAGCGCGTCCGTCCCGTCAGTATCGGCATGGCGAGGCGC
ATCGAGGGCGTTACTCCGTCCGGTGTCCTGAGGGTGCTCATGCATGTGCA
TAGGACCAGTAGGGATAGGACTGCTGCTTCTGCTCCTCCTGCTTCGGAGG
GGCTTGAGGAGACCCCTGATGATGTTATCAGCCAGGCACCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0002098 | tRNA wobble uridine modification |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003870-T1.utr5p1 | KJC3_003870-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003870-T1.utr3p1 | KJC3_003870-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020595 |
| DBxref | InterPro:IPR004416 |
| DBxref | InterPro:IPR026904 |
| DBxref | InterPro:IPR036188 |
| DBxref | PFAM:PF13932 |
| DBxref | PFAM:PF01134 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3270831..3273500 + |
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