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KJC3_003903-T1, KJC3_003903-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003903-T1
Unique NameKJC3_003903-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:3387421..3388671-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003903-T1 ID=KJC3_003903-T1|Name=KJC3_003903-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1251bp|location=Sequence derived from alignment at ch3:3387421..3388671- (Aspergillus niger KJC3)
ATGGCGCCCGCAAGCACTTCTCACCGACAGACGCATAATCTGCTCTTGAT
TTCAAAGCTTCTTAGCCTGAGAGATACCGCATCACCGCTTACCTTGGTCT
TGGACTCACTAGAGCAGCCCGCGACCCCATTGACCAAAGAATACATTCGG
CGTGCAAAGGTAGGCATGCTGTTTGCTCTGAGAATTGGAGGGCTGTTCGC
ACAGTTGAAAGTCGGCTACGAGGCAGTTGAACAATGGCCCTCGTGCCATT
AAGTGCCTGTTCCGTCATTGCTTGCCGACGTGGCTAACTGTCGTCGCAAC
AGCTTTCCAGGACCCATGTAACCCTCCTTGCCTTTGAAACATTGAAACCC
CCGGAGGGCGTCGATGCATTCATTCCCGCTCGCCGGAAGAGTCCTTTAGA
GATCCTGAAAGCAGTTGGCGCTGCTTACCAAAATGTCTCATCGAATAGCC
CTACCCGAAGTATGCCTATCCCAAGCTTCTTCCGCCGAGCTTCATCCGTG
AATTGGCTAATGTATCCAAGGGAGACTCATCCTCATTGACGCCATCAACC
CGCTTCTACACTCGAAAAAGAATGATCCTCAGTTCCATGTATCACAATTT
CTAAGCTCCTTCCTGATTCCACCGAATCCCACAGCTCCGAAGGTGGAGGT
GTCGCTCGTGGTAAACTTTCATCAGGATGTTCCCAGCCCACCTGCTCTCT
CGCCCTACGCACCCTCGCCCCTCTCAATGCTGACATACCTCGCTACTACA
ATCATCACACTCCATTCATTCTCGCATATTCTCGCGCAGAAAGCGGCACG
CGATCGGAGTTTGGCCGCGCCTGTCTTTGGTCTTGAAGAAGAGCAGGATG
GTGTGCTCCTTGGCCGACTGGACAGACCGAGTGGTCAAGACTCATCAGAG
GGGATTGTACTCGAGCTGGAGCACCGCAGAAAGAGTGGTCGCGGCGTCTT
GGAATGGTACTTCCTTCCTCCTGCGTCTCGTTACCCTCCCCAATACGTGA
AGGAGATTGTGACGTTGCTGGACGACCATCCCTTGTACCGCCCGCCGCAG
GAGCCGGACGCTGGTGCAGGCGAAGAAGAGCCCGAATCAACATTCGAATT
GCGCCTTACGGAAAGACAGAGACGAGAGCGAGAGGGTGTGGTGCTGCCGT
ACTTCGATGCCCAGCAGGGCGACGGTCCTGGTGAAGGAGGACGCATCTTA
TACGACATGGGAGAAGAGGACGATTTTGACGAAGAGGAAGATGAAATCTA
G
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Coding sequence (CDS) from alignment at ch3:3387421..3388671-

>KJC3_003903-T1 ID=KJC3_003903-T1|Name=KJC3_003903-T1|organism=Aspergillus niger KJC3|type=CDS|length=3141bp|location=Sequence derived from alignment at ch3:3387421..3388671- (Aspergillus niger KJC3)
GGAGACTCATCCTCATTGACGCCATCAACCCGCTTCTACACTCGAAAAAG
AATGATCCTCAGTTCCATGTATCACAATTTCTAAGCTCCTTCCTGATTCC
ACCGAATCCCACAGCTCCGAAGGTGGAGGTGTCGCTCGTGGTAAACTTTC
ATCAGGATGTTCCCAGCCCACCTGCTCTCTCGCCCTACGCACCCTCGCCC
CTCTCAATGCTGACATACCTCGCTACTACAATCATCACACTCCATTCATT
CTCGCATATTCTCGCGCAGAAAGCGGCACGCGATCGGAGTTTGGCCGCGC
CTGTCTTTGGTCTTGAAGAAGAGCAGGATGGTGTGCTCCTTGGCCGACTG
GACAGACCGAGTGGTCAAGACTCATCAGAGGGGATTGTACTCGAGCTGGA
GCACCGCAGAAAGAGTGGTCGCGGCGTCTTGGAATGGTACTTCCTTCCTC
CTGCGTCTCGTTACCCTCCCCAATACGTGAAGGAGATTGTGACGTTGCTG
GACGACCATCCCTTGTACCGCCCGCCGCAGGAGCCGGACGCTGGTGCAGG
CGAAGAAGAGCCCGAATCAACATTCGAATTGCGCCTTACGGAAAGACAGA
GACGAGAGCGAGAGGGTGTGGTGCTGCCGTACTTCGATGCCCAGCAGGGC
GACGGTCCTGGTGAAGGAGGACGCATCTTATACGACATGGGAGAAGAGGA
CGATTTTGACGAAGAGGAAGATGAAATCTAGCTTTCCAGGACCCATGTAA
CCCTCCTTGCCTTTGAAACATTGAAACCCCCGGAGGGCGTCGATGCATTC
ATTCCCGCTCGCCGGAAGAGTCCTTTAGAGATCCTGAAAGCAGTTGGCGC
TGCTTACCAAAATGTCTCATCGAATAGCCCTACCCGAAATGGCGCCCGCA
AGCACTTCTCACCGACAGACGCATAATCTGCTCTTGATTTCAAAGCTTCT
TAGCCTGAGAGATACCGCATCACCGCTTACCTTGGTCTTGGACTCACTAG
AGCAGCCCGCGACCCCATTGACCAAAGAATACATTCGGCGTGCAAAGGGA
GACTCATCCTCATTGACGCCATCAACCCGCTTCTACACTCGAAAAAGAAT
GATCCTCAGTTCCATGTATCACAATTTCTAAGCTCCTTCCTGATTCCACC
GAATCCCACAGCTCCGAAGGTGGAGGTGTCGCTCGTGGTAAACTTTCATC
AGGATGTTCCCAGCCCACCTGCTCTCTCGCCCTACGCACCCTCGCCCCTC
TCAATGCTGACATACCTCGCTACTACAATCATCACACTCCATTCATTCTC
GCATATTCTCGCGCAGAAAGCGGCACGCGATCGGAGTTTGGCCGCGCCTG
TCTTTGGTCTTGAAGAAGAGCAGGATGGTGTGCTCCTTGGCCGACTGGAC
AGACCGAGTGGTCAAGACTCATCAGAGGGGATTGTACTCGAGCTGGAGCA
CCGCAGAAAGAGTGGTCGCGGCGTCTTGGAATGGTACTTCCTTCCTCCTG
CGTCTCGTTACCCTCCCCAATACGTGAAGGAGATTGTGACGTTGCTGGAC
GACCATCCCTTGTACCGCCCGCCGCAGGAGCCGGACGCTGGTGCAGGCGA
AGAAGAGCCCGAATCAACATTCGAATTGCGCCTTACGGAAAGACAGAGAC
GAGAGCGAGAGGGTGTGGTGCTGCCGTACTTCGATGCCCAGCAGGGCGAC
GGTCCTGGTGAAGGAGGACGCATCTTATACGACATGGGAGAAGAGGACGA
TTTTGACGAAGAGGAAGATGAAATCTAGCTTTCCAGGACCCATGTAACCC
TCCTTGCCTTTGAAACATTGAAACCCCCGGAGGGCGTCGATGCATTCATT
CCCGCTCGCCGGAAGAGTCCTTTAGAGATCCTGAAAGCAGTTGGCGCTGC
TTACCAAAATGTCTCATCGAATAGCCCTACCCGAAATGGCGCCCGCAAGC
ACTTCTCACCGACAGACGCATAATCTGCTCTTGATTTCAAAGCTTCTTAG
CCTGAGAGATACCGCATCACCGCTTACCTTGGTCTTGGACTCACTAGAGC
AGCCCGCGACCCCATTGACCAAAGAATACATTCGGCGTGCAAAGGGAGAC
TCATCCTCATTGACGCCATCAACCCGCTTCTACACTCGAAAAAGAATGAT
CCTCAGTTCCATGTATCACAATTTCTAAGCTCCTTCCTGATTCCACCGAA
TCCCACAGCTCCGAAGGTGGAGGTGTCGCTCGTGGTAAACTTTCATCAGG
ATGTTCCCAGCCCACCTGCTCTCTCGCCCTACGCACCCTCGCCCCTCTCA
ATGCTGACATACCTCGCTACTACAATCATCACACTCCATTCATTCTCGCA
TATTCTCGCGCAGAAAGCGGCACGCGATCGGAGTTTGGCCGCGCCTGTCT
TTGGTCTTGAAGAAGAGCAGGATGGTGTGCTCCTTGGCCGACTGGACAGA
CCGAGTGGTCAAGACTCATCAGAGGGGATTGTACTCGAGCTGGAGCACCG
CAGAAAGAGTGGTCGCGGCGTCTTGGAATGGTACTTCCTTCCTCCTGCGT
CTCGTTACCCTCCCCAATACGTGAAGGAGATTGTGACGTTGCTGGACGAC
CATCCCTTGTACCGCCCGCCGCAGGAGCCGGACGCTGGTGCAGGCGAAGA
AGAGCCCGAATCAACATTCGAATTGCGCCTTACGGAAAGACAGAGACGAG
AGCGAGAGGGTGTGGTGCTGCCGTACTTCGATGCCCAGCAGGGCGACGGT
CCTGGTGAAGGAGGACGCATCTTATACGACATGGGAGAAGAGGACGATTT
TGACGAAGAGGAAGATGAAATCTAGCTTTCCAGGACCCATGTAACCCTCC
TTGCCTTTGAAACATTGAAACCCCCGGAGGGCGTCGATGCATTCATTCCC
GCTCGCCGGAAGAGTCCTTTAGAGATCCTGAAAGCAGTTGGCGCTGCTTA
CCAAAATGTCTCATCGAATAGCCCTACCCGAAATGGCGCCCGCAAGCACT
TCTCACCGACAGACGCATAATCTGCTCTTGATTTCAAAGCTTCTTAGCCT
GAGAGATACCGCATCACCGCTTACCTTGGTCTTGGACTCACTAGAGCAGC
CCGCGACCCCATTGACCAAAGAATACATTCGGCGTGCAAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0033588Elongator holoenzyme complex
Vocabulary: Biological Process
TermDefinition
GO:0002098tRNA wobble uridine modification
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003903KJC3_003903Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003903-T1KJC3_003903-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003903-T1.cdsKJC3_003903-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003903-T1.exon3KJC3_003903-T1.exon3Aspergillus niger KJC3exon
KJC3_003903-T1.exon2KJC3_003903-T1.exon2Aspergillus niger KJC3exon
KJC3_003903-T1.exon1KJC3_003903-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
DBxrefInterPro:IPR019519
DBxrefPFAM:PF10483
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:3387421..3388671 -
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