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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3445631..3446544+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003922-T1 ID=KJC3_003922-T1|Name=KJC3_003922-T1|organism=Aspergillus niger KJC3|type=mRNA|length=914bp|location=Sequence derived from alignment at ch3:3445631..3446544+ (Aspergillus niger KJC3)
CGGAGAAGACCTTGTTATTTTCCGGCCACGTGGCTGCGAGCTGACACCGG
AGCAGGCAATACGAACTTGTGGCACACGCGTTGGCTTGACTACTAGCATC
TACCATGGCTTTTCCTCCGATAGCTAGGGCGACCTTGCAAGCTGCGCTGA
TCAATGCTGGTTCCAATGTTCTGGCTCAGACTATTGGAGCTTACAGGGAT
GAGGTATGTTGATTTGTTCCTCGGTAAAAGTAAATTGCCTAGCAAATGAT
GTCGGGTCAGAGATAAAATGATTCGTTCGCTCTTGTGTGGAGTGATAGCT
ACTATTCGATTACCACTTCACTAACCATGGATATGGTTCATTGGCAATCC
GTGTGGGTGGCCCCCCATGGTTGCCGATATTATGATGCCTATAGAGACCC
TTTGAATTAGACACTCAAGCCTTATTTCAGTTCACTACTTGTGCCTTCGT
TCTTTCACCCTTGACCTTCCTGTGGCTTGAAGGCCTCGAGGCAAAGCTCC
CGGGCTATGATGAGAGCTCTGTCCCCAAGCCAAAAGCGGAGAAGAAGGTG
GCACAGAAGCCCAGGCTAAATGTCACCAATACTGTGGCGAAGATTATCAT
CGATCAGATCATCGGCGGTGCCTGGAACACGGCAGTCTTTATCACGACGA
TGGGGCTTCTGCGCGGCCAGAGCTGGGACGCCATTACGCTGCAGATCCAG
AAGGTTTGTTTTCCAGGCTTGTATTAATATGACCTGTACTGGATTGCTGA
CCTATCATTGTCAGGATTTCTGGCCCATCCTGATCGCCGGATTCAAACTG
TGGCCAATTGTCTCTATCCTGAACTTCACCGTTGTCCCAACAGACAAACG
GCTACTCGTTGGCAGTCTGTTCGGTGTGCTCTGGGCTGTTTATCTGAGCC
TGATGTCGGGTTGA back to topCoding sequence (CDS) from alignment at ch3:3445631..3446544+ >KJC3_003922-T1 ID=KJC3_003922-T1|Name=KJC3_003922-T1|organism=Aspergillus niger KJC3|type=CDS|length=1674bp|location=Sequence derived from alignment at ch3:3445631..3446544+ (Aspergillus niger KJC3)
ATGGCTTTTCCTCCGATAGCTAGGGCGACCTTGCAAGCTGCGCTGATCAA
TGCTGGTTCCAATGTTCTGGCTCAGACTATTGGAGCTTACAGGGATGAGA
GACCCTTTGAATTAGACACTCAAGCCTTATTTCAGTTCACTACTTGTGCC
TTCGTTCTTTCACCCTTGACCTTCCTGTGGCTTGAAGGCCTCGAGGCAAA
GCTCCCGGGCTATGATGAGAGCTCTGTCCCCAAGCCAAAAGCGGAGAAGA
AGGTGGCACAGAAGCCCAGGCTAAATGTCACCAATACTGTGGCGAAGATT
ATCATCGATCAGATCATCGGCGGTGCCTGGAACACGGCAGTCTTTATCAC
GACGATGGGGCTTCTGCGCGGCCAGAGCTGGGACGCCATTACGCTGCAGA
TCCAGAAGGATTTCTGGCCCATCCTGATCGCCGGATTCAAACTGTGGCCA
ATTGTCTCTATCCTGAACTTCACCGTTGTCCCAACAGACAAACGGCTACT
CGTTGGCAGTCTGTTCGGTGTGCTCTGGGCTGTTTATCTGAGCCTGATGT
CGGGTTGAATGGCTTTTCCTCCGATAGCTAGGGCGACCTTGCAAGCTGCG
CTGATCAATGCTGGTTCCAATGTTCTGGCTCAGACTATTGGAGCTTACAG
GGATGAGAGACCCTTTGAATTAGACACTCAAGCCTTATTTCAGTTCACTA
CTTGTGCCTTCGTTCTTTCACCCTTGACCTTCCTGTGGCTTGAAGGCCTC
GAGGCAAAGCTCCCGGGCTATGATGAGAGCTCTGTCCCCAAGCCAAAAGC
GGAGAAGAAGGTGGCACAGAAGCCCAGGCTAAATGTCACCAATACTGTGG
CGAAGATTATCATCGATCAGATCATCGGCGGTGCCTGGAACACGGCAGTC
TTTATCACGACGATGGGGCTTCTGCGCGGCCAGAGCTGGGACGCCATTAC
GCTGCAGATCCAGAAGGATTTCTGGCCCATCCTGATCGCCGGATTCAAAC
TGTGGCCAATTGTCTCTATCCTGAACTTCACCGTTGTCCCAACAGACAAA
CGGCTACTCGTTGGCAGTCTGTTCGGTGTGCTCTGGGCTGTTTATCTGAG
CCTGATGTCGGGTTGAATGGCTTTTCCTCCGATAGCTAGGGCGACCTTGC
AAGCTGCGCTGATCAATGCTGGTTCCAATGTTCTGGCTCAGACTATTGGA
GCTTACAGGGATGAGAGACCCTTTGAATTAGACACTCAAGCCTTATTTCA
GTTCACTACTTGTGCCTTCGTTCTTTCACCCTTGACCTTCCTGTGGCTTG
AAGGCCTCGAGGCAAAGCTCCCGGGCTATGATGAGAGCTCTGTCCCCAAG
CCAAAAGCGGAGAAGAAGGTGGCACAGAAGCCCAGGCTAAATGTCACCAA
TACTGTGGCGAAGATTATCATCGATCAGATCATCGGCGGTGCCTGGAACA
CGGCAGTCTTTATCACGACGATGGGGCTTCTGCGCGGCCAGAGCTGGGAC
GCCATTACGCTGCAGATCCAGAAGGATTTCTGGCCCATCCTGATCGCCGG
ATTCAAACTGTGGCCAATTGTCTCTATCCTGAACTTCACCGTTGTCCCAA
CAGACAAACGGCTACTCGTTGGCAGTCTGTTCGGTGTGCTCTGGGCTGTT
TATCTGAGCCTGATGTCGGGTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003922-T1.utr5p1 | KJC3_003922-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007248 |
| DBxref | PFAM:PF04117 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3445631..3446544 + |
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