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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3485520..3487884+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003940-T1 ID=KJC3_003940-T1|Name=KJC3_003940-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2365bp|location=Sequence derived from alignment at ch3:3485520..3487884+ (Aspergillus niger KJC3)
CAGCAACGTAAGTCTAAATACTACTACTTTACTCATCCCCCCCATTTTCT
CCGTGCTTTCCGCCCTGTCTTTCTTTCTTCTCCTTCTCTCCCTCTCCAAT
TCGGCGGCATTGCTGCATCCTCCTCCATTCATTGCATCGTCTTGGGTATC
ATCATGTCTGCCTCTTGTTCAGCGTTGAGACGGCTGACCCACAGGTCTCC
CCGCACTTGGCCCTCCCGCATCTCCTCCGTCTCCAGGCCTGCATCTTCTC
TTTCCTCCGTTGCTCGTCCGAGTCGCAGCACACCCTCAACTTTTTCTCAC
ATCTCTCGATTTTCCACCATGTCTCCCCTTCAACATGCTGCTCCCGTCGT
TCCCGGCGATAAGCCGTACGACCCAGAGATCAAGGATATGGCCGACTATA
TCCACAACTACAATGTGAACTCGGACTTGGCGGTACGAGGGTTCTCCCAT
GTTTTGATTGACTTTCTTCTGTGTGCGATGGACTAATTGAAGACATCCTG
ACTTTTAGTATGACACCGCCCGTTTGGTGTTCCTCGACACTCTGGGGTGC
GGTTTGGAGGCATTGAAGTTCAAGGAATGCTCCAAGCTCCTGGGCCCGGT
GGTGGACGGCACCGTGGTGCCCAACGGAACTCGCGTTCCTGGAACGCCCT
ACCAGCTGGACCCTGTCAACGGCGCTTTCAACATTGGCGCTATGATCCGC
TGGCTGGACTACAACGACTGCTGGTTGGCTGCTGAATGGGGTCACCCCTC
GGACAACCTGGGTGGAATCCTTGCTGTCGCCGACTGGGTTTCTCGCACAA
ACCGTGCGGGCGGAAACATTGCCAACGGCAAGATCTTCAAGGTCAAGGAC
GTCCTGGAGGCCATGATCAAGGCGCACGAGATTCAGGGTGTGTTGGCGCT
GGAGAACTCCTTCAACAAGGTCGGCTTGGACCACGTCGTTCTCGTCAAGG
TTGCTACCACTGCTGTCGTTGCAAAGATGCTCGGCCTTAGCGAGAAGCAG
ACCGCAGATGCGATTACCCAAGCATTCGTGGACGGACAGTCTCTCCGTAC
CTACAGACACTCCCCCAACACCATGTCGAGGAAGTCCTGGGCTGCGGGTG
ACGCATGCCAGCGGGCCGTGAACCTCGTCTTGAAGGTGCAGAAGGGCGAG
GGTGGCCTGCACACCGTCCTGTCTGCTCCCGTTTGGGGTTTCTATGATGT
CCTGTTCAAGGGCAACAAGTTCCAGTTCCAGCGCCCCTACGGTAGTTATG
TCATGGAGAATGTTCTGTTCAAGGTCTCCTACCCGGGTAAGTCTAGCATC
AGACGTCAGTATGGAGGGAATACTAACAGTTGCCATGATAGCCGAGTTCC
ACTCCCAGACCGCGATCGAGGCCGCTGAGATGGTTAACGTGAAGCTCAAG
GCTCTCGGAAAGACTGCCGCCGACATTAAGGAGATCAGAAACCGCACCCA
CGAGGCGTGCATTCGTATCATCGACAAGCAGTTCAAGGCGATGGACAACT
TCGCCGATCGTGACCACTGTGTTCAGGTAGGTCCTGCCGTATCCAAAATT
TGAGTGTCATGCACCACGCATACTGACAACCGCGCCAGTACATGGTTGCG
ACCATGTTGGTCTTCAACCGGTTGACTGCCAACGACTACGCCGACGGATC
GGAGGCTGCTACTTCTCAGCTCCTGGAAGACCTGCGCAAGCGCATTTACT
GTGTCGAGGATCCCCAGTTCACTAAGGATTACCACGACCCTGCGAAGCGC
ACCATCCCCAACGCCCTTACCGTTACTCTGAATGACGGAACGGTGCTGGA
TGAGGTGGTTGTCGAGGCACCCTTGGGCCACCGCCTGCGGCGTGAGGAGG
CCAAGCCGGAGATTCTGGCCAAGTACAAGCGTCATCTGCAGGCGCACTTT
GACCAGGCCCGCATTGACCAGCTGATTCAGGTTGGCTGGGACCAGGCCGC
TCTTGAGGGCTACGACGTTGACCAGTACGTCGACTTGTATGTCAAGGACC
AGATGGTGGCAGCTCAGTAGAGTCATGATTGTATATGCGGCATGGAGAAA
TTATACCATAATCAGAAGCGAGACTTTGGAGACATCGTGTATGAGATTAA
CGAGAATTAGCCACTGATAGAATACATTGAATTACCATATGGTGGGACAG
CGATAATCAGGATTCTGCAGGCAGGAGGAATGAATAGAGGTCGGGCTAGG
ATACTAGTGGATGGCCTCGCTGCCGACGGTTACGCGACACGCTGCCGAAC
CCGCCAACAACAAGATCCATGTTTATCAGTCAGGATCAAGAGCTTGCCGA
CCCTCCCTATGTTATCATCTTGCAGAGTAGTCGAGCTAGTAGATTTCCCC
ATACAGACAACAGCT back to topCoding sequence (CDS) from alignment at ch3:3485520..3487884+ >KJC3_003940-T1 ID=KJC3_003940-T1|Name=KJC3_003940-T1|organism=Aspergillus niger KJC3|type=CDS|length=6696bp|location=Sequence derived from alignment at ch3:3485520..3487884+ (Aspergillus niger KJC3)
ATGTCTGCCTCTTGTTCAGCGTTGAGACGGCTGACCCACAGGTCTCCCCG
CACTTGGCCCTCCCGCATCTCCTCCGTCTCCAGGCCTGCATCTTCTCTTT
CCTCCGTTGCTCGTCCGAGTCGCAGCACACCCTCAACTTTTTCTCACATC
TCTCGATTTTCCACCATGTCTCCCCTTCAACATGCTGCTCCCGTCGTTCC
CGGCGATAAGCCGTACGACCCAGAGATCAAGGATATGGCCGACTATATCC
ACAACTACAATGTGAACTCGGACTTGGCGTATGACACCGCCCGTTTGGTG
TTCCTCGACACTCTGGGGTGCGGTTTGGAGGCATTGAAGTTCAAGGAATG
CTCCAAGCTCCTGGGCCCGGTGGTGGACGGCACCGTGGTGCCCAACGGAA
CTCGCGTTCCTGGAACGCCCTACCAGCTGGACCCTGTCAACGGCGCTTTC
AACATTGGCGCTATGATCCGCTGGCTGGACTACAACGACTGCTGGTTGGC
TGCTGAATGGGGTCACCCCTCGGACAACCTGGGTGGAATCCTTGCTGTCG
CCGACTGGGTTTCTCGCACAAACCGTGCGGGCGGAAACATTGCCAACGGC
AAGATCTTCAAGGTCAAGGACGTCCTGGAGGCCATGATCAAGGCGCACGA
GATTCAGGGTGTGTTGGCGCTGGAGAACTCCTTCAACAAGGTCGGCTTGG
ACCACGTCGTTCTCGTCAAGGTTGCTACCACTGCTGTCGTTGCAAAGATG
CTCGGCCTTAGCGAGAAGCAGACCGCAGATGCGATTACCCAAGCATTCGT
GGACGGACAGTCTCTCCGTACCTACAGACACTCCCCCAACACCATGTCGA
GGAAGTCCTGGGCTGCGGGTGACGCATGCCAGCGGGCCGTGAACCTCGTC
TTGAAGGTGCAGAAGGGCGAGGGTGGCCTGCACACCGTCCTGTCTGCTCC
CGTTTGGGGTTTCTATGATGTCCTGTTCAAGGGCAACAAGTTCCAGTTCC
AGCGCCCCTACGGTAGTTATGTCATGGAGAATGTTCTGTTCAAGGTCTCC
TACCCGGCCGAGTTCCACTCCCAGACCGCGATCGAGGCCGCTGAGATGGT
TAACGTGAAGCTCAAGGCTCTCGGAAAGACTGCCGCCGACATTAAGGAGA
TCAGAAACCGCACCCACGAGGCGTGCATTCGTATCATCGACAAGCAGTTC
AAGGCGATGGACAACTTCGCCGATCGTGACCACTGTGTTCAGTACATGGT
TGCGACCATGTTGGTCTTCAACCGGTTGACTGCCAACGACTACGCCGACG
GATCGGAGGCTGCTACTTCTCAGCTCCTGGAAGACCTGCGCAAGCGCATT
TACTGTGTCGAGGATCCCCAGTTCACTAAGGATTACCACGACCCTGCGAA
GCGCACCATCCCCAACGCCCTTACCGTTACTCTGAATGACGGAACGGTGC
TGGATGAGGTGGTTGTCGAGGCACCCTTGGGCCACCGCCTGCGGCGTGAG
GAGGCCAAGCCGGAGATTCTGGCCAAGTACAAGCGTCATCTGCAGGCGCA
CTTTGACCAGGCCCGCATTGACCAGCTGATTCAGGTTGGCTGGGACCAGG
CCGCTCTTGAGGGCTACGACGTTGACCAGTACGTCGACTTGTATGTCAAG
GACCAGATGGTGGCAGCTCAGTAGATGTCTGCCTCTTGTTCAGCGTTGAG
ACGGCTGACCCACAGGTCTCCCCGCACTTGGCCCTCCCGCATCTCCTCCG
TCTCCAGGCCTGCATCTTCTCTTTCCTCCGTTGCTCGTCCGAGTCGCAGC
ACACCCTCAACTTTTTCTCACATCTCTCGATTTTCCACCATGTCTCCCCT
TCAACATGCTGCTCCCGTCGTTCCCGGCGATAAGCCGTACGACCCAGAGA
TCAAGGATATGGCCGACTATATCCACAACTACAATGTGAACTCGGACTTG
GCGTATGACACCGCCCGTTTGGTGTTCCTCGACACTCTGGGGTGCGGTTT
GGAGGCATTGAAGTTCAAGGAATGCTCCAAGCTCCTGGGCCCGGTGGTGG
ACGGCACCGTGGTGCCCAACGGAACTCGCGTTCCTGGAACGCCCTACCAG
CTGGACCCTGTCAACGGCGCTTTCAACATTGGCGCTATGATCCGCTGGCT
GGACTACAACGACTGCTGGTTGGCTGCTGAATGGGGTCACCCCTCGGACA
ACCTGGGTGGAATCCTTGCTGTCGCCGACTGGGTTTCTCGCACAAACCGT
GCGGGCGGAAACATTGCCAACGGCAAGATCTTCAAGGTCAAGGACGTCCT
GGAGGCCATGATCAAGGCGCACGAGATTCAGGGTGTGTTGGCGCTGGAGA
ACTCCTTCAACAAGGTCGGCTTGGACCACGTCGTTCTCGTCAAGGTTGCT
ACCACTGCTGTCGTTGCAAAGATGCTCGGCCTTAGCGAGAAGCAGACCGC
AGATGCGATTACCCAAGCATTCGTGGACGGACAGTCTCTCCGTACCTACA
GACACTCCCCCAACACCATGTCGAGGAAGTCCTGGGCTGCGGGTGACGCA
TGCCAGCGGGCCGTGAACCTCGTCTTGAAGGTGCAGAAGGGCGAGGGTGG
CCTGCACACCGTCCTGTCTGCTCCCGTTTGGGGTTTCTATGATGTCCTGT
TCAAGGGCAACAAGTTCCAGTTCCAGCGCCCCTACGGTAGTTATGTCATG
GAGAATGTTCTGTTCAAGGTCTCCTACCCGGCCGAGTTCCACTCCCAGAC
CGCGATCGAGGCCGCTGAGATGGTTAACGTGAAGCTCAAGGCTCTCGGAA
AGACTGCCGCCGACATTAAGGAGATCAGAAACCGCACCCACGAGGCGTGC
ATTCGTATCATCGACAAGCAGTTCAAGGCGATGGACAACTTCGCCGATCG
TGACCACTGTGTTCAGTACATGGTTGCGACCATGTTGGTCTTCAACCGGT
TGACTGCCAACGACTACGCCGACGGATCGGAGGCTGCTACTTCTCAGCTC
CTGGAAGACCTGCGCAAGCGCATTTACTGTGTCGAGGATCCCCAGTTCAC
TAAGGATTACCACGACCCTGCGAAGCGCACCATCCCCAACGCCCTTACCG
TTACTCTGAATGACGGAACGGTGCTGGATGAGGTGGTTGTCGAGGCACCC
TTGGGCCACCGCCTGCGGCGTGAGGAGGCCAAGCCGGAGATTCTGGCCAA
GTACAAGCGTCATCTGCAGGCGCACTTTGACCAGGCCCGCATTGACCAGC
TGATTCAGGTTGGCTGGGACCAGGCCGCTCTTGAGGGCTACGACGTTGAC
CAGTACGTCGACTTGTATGTCAAGGACCAGATGGTGGCAGCTCAGTAGAT
GTCTGCCTCTTGTTCAGCGTTGAGACGGCTGACCCACAGGTCTCCCCGCA
CTTGGCCCTCCCGCATCTCCTCCGTCTCCAGGCCTGCATCTTCTCTTTCC
TCCGTTGCTCGTCCGAGTCGCAGCACACCCTCAACTTTTTCTCACATCTC
TCGATTTTCCACCATGTCTCCCCTTCAACATGCTGCTCCCGTCGTTCCCG
GCGATAAGCCGTACGACCCAGAGATCAAGGATATGGCCGACTATATCCAC
AACTACAATGTGAACTCGGACTTGGCGTATGACACCGCCCGTTTGGTGTT
CCTCGACACTCTGGGGTGCGGTTTGGAGGCATTGAAGTTCAAGGAATGCT
CCAAGCTCCTGGGCCCGGTGGTGGACGGCACCGTGGTGCCCAACGGAACT
CGCGTTCCTGGAACGCCCTACCAGCTGGACCCTGTCAACGGCGCTTTCAA
CATTGGCGCTATGATCCGCTGGCTGGACTACAACGACTGCTGGTTGGCTG
CTGAATGGGGTCACCCCTCGGACAACCTGGGTGGAATCCTTGCTGTCGCC
GACTGGGTTTCTCGCACAAACCGTGCGGGCGGAAACATTGCCAACGGCAA
GATCTTCAAGGTCAAGGACGTCCTGGAGGCCATGATCAAGGCGCACGAGA
TTCAGGGTGTGTTGGCGCTGGAGAACTCCTTCAACAAGGTCGGCTTGGAC
CACGTCGTTCTCGTCAAGGTTGCTACCACTGCTGTCGTTGCAAAGATGCT
CGGCCTTAGCGAGAAGCAGACCGCAGATGCGATTACCCAAGCATTCGTGG
ACGGACAGTCTCTCCGTACCTACAGACACTCCCCCAACACCATGTCGAGG
AAGTCCTGGGCTGCGGGTGACGCATGCCAGCGGGCCGTGAACCTCGTCTT
GAAGGTGCAGAAGGGCGAGGGTGGCCTGCACACCGTCCTGTCTGCTCCCG
TTTGGGGTTTCTATGATGTCCTGTTCAAGGGCAACAAGTTCCAGTTCCAG
CGCCCCTACGGTAGTTATGTCATGGAGAATGTTCTGTTCAAGGTCTCCTA
CCCGGCCGAGTTCCACTCCCAGACCGCGATCGAGGCCGCTGAGATGGTTA
ACGTGAAGCTCAAGGCTCTCGGAAAGACTGCCGCCGACATTAAGGAGATC
AGAAACCGCACCCACGAGGCGTGCATTCGTATCATCGACAAGCAGTTCAA
GGCGATGGACAACTTCGCCGATCGTGACCACTGTGTTCAGTACATGGTTG
CGACCATGTTGGTCTTCAACCGGTTGACTGCCAACGACTACGCCGACGGA
TCGGAGGCTGCTACTTCTCAGCTCCTGGAAGACCTGCGCAAGCGCATTTA
CTGTGTCGAGGATCCCCAGTTCACTAAGGATTACCACGACCCTGCGAAGC
GCACCATCCCCAACGCCCTTACCGTTACTCTGAATGACGGAACGGTGCTG
GATGAGGTGGTTGTCGAGGCACCCTTGGGCCACCGCCTGCGGCGTGAGGA
GGCCAAGCCGGAGATTCTGGCCAAGTACAAGCGTCATCTGCAGGCGCACT
TTGACCAGGCCCGCATTGACCAGCTGATTCAGGTTGGCTGGGACCAGGCC
GCTCTTGAGGGCTACGACGTTGACCAGTACGTCGACTTGTATGTCAAGGA
CCAGATGGTGGCAGCTCAGTAGATGTCTGCCTCTTGTTCAGCGTTGAGAC
GGCTGACCCACAGGTCTCCCCGCACTTGGCCCTCCCGCATCTCCTCCGTC
TCCAGGCCTGCATCTTCTCTTTCCTCCGTTGCTCGTCCGAGTCGCAGCAC
ACCCTCAACTTTTTCTCACATCTCTCGATTTTCCACCATGTCTCCCCTTC
AACATGCTGCTCCCGTCGTTCCCGGCGATAAGCCGTACGACCCAGAGATC
AAGGATATGGCCGACTATATCCACAACTACAATGTGAACTCGGACTTGGC
GTATGACACCGCCCGTTTGGTGTTCCTCGACACTCTGGGGTGCGGTTTGG
AGGCATTGAAGTTCAAGGAATGCTCCAAGCTCCTGGGCCCGGTGGTGGAC
GGCACCGTGGTGCCCAACGGAACTCGCGTTCCTGGAACGCCCTACCAGCT
GGACCCTGTCAACGGCGCTTTCAACATTGGCGCTATGATCCGCTGGCTGG
ACTACAACGACTGCTGGTTGGCTGCTGAATGGGGTCACCCCTCGGACAAC
CTGGGTGGAATCCTTGCTGTCGCCGACTGGGTTTCTCGCACAAACCGTGC
GGGCGGAAACATTGCCAACGGCAAGATCTTCAAGGTCAAGGACGTCCTGG
AGGCCATGATCAAGGCGCACGAGATTCAGGGTGTGTTGGCGCTGGAGAAC
TCCTTCAACAAGGTCGGCTTGGACCACGTCGTTCTCGTCAAGGTTGCTAC
CACTGCTGTCGTTGCAAAGATGCTCGGCCTTAGCGAGAAGCAGACCGCAG
ATGCGATTACCCAAGCATTCGTGGACGGACAGTCTCTCCGTACCTACAGA
CACTCCCCCAACACCATGTCGAGGAAGTCCTGGGCTGCGGGTGACGCATG
CCAGCGGGCCGTGAACCTCGTCTTGAAGGTGCAGAAGGGCGAGGGTGGCC
TGCACACCGTCCTGTCTGCTCCCGTTTGGGGTTTCTATGATGTCCTGTTC
AAGGGCAACAAGTTCCAGTTCCAGCGCCCCTACGGTAGTTATGTCATGGA
GAATGTTCTGTTCAAGGTCTCCTACCCGGCCGAGTTCCACTCCCAGACCG
CGATCGAGGCCGCTGAGATGGTTAACGTGAAGCTCAAGGCTCTCGGAAAG
ACTGCCGCCGACATTAAGGAGATCAGAAACCGCACCCACGAGGCGTGCAT
TCGTATCATCGACAAGCAGTTCAAGGCGATGGACAACTTCGCCGATCGTG
ACCACTGTGTTCAGTACATGGTTGCGACCATGTTGGTCTTCAACCGGTTG
ACTGCCAACGACTACGCCGACGGATCGGAGGCTGCTACTTCTCAGCTCCT
GGAAGACCTGCGCAAGCGCATTTACTGTGTCGAGGATCCCCAGTTCACTA
AGGATTACCACGACCCTGCGAAGCGCACCATCCCCAACGCCCTTACCGTT
ACTCTGAATGACGGAACGGTGCTGGATGAGGTGGTTGTCGAGGCACCCTT
GGGCCACCGCCTGCGGCGTGAGGAGGCCAAGCCGGAGATTCTGGCCAAGT
ACAAGCGTCATCTGCAGGCGCACTTTGACCAGGCCCGCATTGACCAGCTG
ATTCAGGTTGGCTGGGACCAGGCCGCTCTTGAGGGCTACGACGTTGACCA
GTACGTCGACTTGTATGTCAAGGACCAGATGGTGGCAGCTCAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0019629 | propionate catabolic process, 2-methylcitrate cycle |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0047547 | 2-methylcitrate dehydratase activity |
| GO:0051537 | 2 iron, 2 sulfur cluster binding |
| GO:0016829 | lyase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003940-T1.utr5p1 | KJC3_003940-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003940-T1.utr3p1 | KJC3_003940-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036148 |
| DBxref | InterPro:IPR012705 |
| DBxref | InterPro:IPR042183 |
| DBxref | InterPro:IPR042188 |
| DBxref | InterPro:IPR005656 |
| DBxref | PFAM:PF03972 |
| Product | ATP-binding cassette transporter CGR1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3485520..3487884 + |
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