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KJC3_003940-T2, KJC3_003940-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003940-T2
Unique NameKJC3_003940-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:3485520..3487884+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003940-T2 ID=KJC3_003940-T2|Name=KJC3_003940-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2365bp|location=Sequence derived from alignment at ch3:3485520..3487884+ (Aspergillus niger KJC3)
CAGCAACGTAAGTCTAAATACTACTACTTTACTCATCCCCCCCATTTTCT
CCGTGCTTTCCGCCCTGTCTTTCTTTCTTCTCCTTCTCTCCCTCTCCAAT
TCGGCGGCATTGCTGCATCCTCCTCCATTCATTGCATCGTCTTGGGTATC
ATCATGTCTGCCTCTTGTTCAGCGTTGAGACGGCTGACCCACAGGTCTCC
CCGCACTTGGCCCTCCCGCATCTCCTCCGTCTCCAGGCCTGCATCTTCTC
TTTCCTCCGTTGCTCGTCCGAGTCGCAGCACACCCTCAACTTTTTCTCAC
ATCTCTCGATTTTCCACCATGTCTCCCCTTCAACATGCTGCTCCCGTCGT
TCCCGGCGATAAGCCGTACGACCCAGAGATCAAGGATATGGCCGACTATA
TCCACAACTACAATGTGAACTCGGACTTGGCGGTACGAGGGTTCTCCCAT
GTTTTGATTGACTTTCTTCTGTGTGCGATGGACTAATTGAAGACATCCTG
ACTTTTAGTATGACACCGCCCGTTTGGTGTTCCTCGACACTCTGGGGTGC
GGTTTGGAGGCATTGAAGTTCAAGGAATGCTCCAAGCTCCTGGGCCCGGT
GGTGGACGGCACCGTGGTGCCCAACGGAACTCGCGTTCCTGGAACGCCCT
ACCAGCTGGACCCTGTCAACGGCGCTTTCAACATTGGCGCTATGATCCGC
TGGCTGGACTACAACGACTGCTGGTTGGCTGCTGAATGGGGTCACCCCTC
GGACAACCTGGGTGGAATCCTTGCTGTCGCCGACTGGGTTTCTCGCACAA
ACCGTGCGGGCGGAAACATTGCCAACGGCAAGATCTTCAAGGTCAAGGAC
GTCCTGGAGGCCATGATCAAGGCGCACGAGATTCAGGGTGTGTTGGCGCT
GGAGAACTCCTTCAACAAGGTCGGCTTGGACCACGTCGTTCTCGTCAAGG
TTGCTACCACTGCTGTCGTTGCAAAGATGCTCGGCCTTAGCGAGAAGCAG
ACCGCAGATGCGATTACCCAAGCATTCGTGGACGGACAGTCTCTCCGTAC
CTACAGACACTCCCCCAACACCATGTCGAGGAAGTCCTGGGCTGCGGGTG
ACGCATGCCAGCGGGCCGTGAACCTCGTCTTGAAGGTGCAGAAGGGCGAG
GGTGGCCTGCACACCGTCCTGTCTGCTCCCGTTTGGGGTTTCTATGATGT
CCTGTTCAAGGGCAACAAGTTCCAGTTCCAGCGCCCCTACGGTAGTTATG
TCATGGAGAATGTTCTGTTCAAGGTCTCCTACCCGGGTAAGTCTAGCATC
AGACGTCAGTATGGAGGGAATACTAACAGTTGCCATGATAGCCGAGTTCC
ACTCCCAGACCGCGATCGAGGCCGCTGAGATGGTTAACGTGAAGCTCAAG
GCTCTCGGAAAGACTGCCGCCGACATTAAGGAGATCAGAAACCGCACCCA
CGAGGCGTGCATTCGTATCATCGACAAGCAGTTCAAGGCGATGGACAACT
TCGCCGATCGTGACCACTGTGTTCAGGTAGGTCCTGCCGTATCCAAAATT
TGAGTGTCATGCACCACGCATACTGACAACCGCGCCAGTACATGGTTGCG
ACCATGTTGGTCTTCAACCGGTTGACTGCCAACGACTACGCCGACGGATC
GGAGGCTGCTACTTCTCAGCTCCTGGAAGACCTGCGCAAGCGCATTTACT
GTGTCGAGGATCCCCAGTTCACTAAGGATTACCACGACCCTGCGAAGCGC
ACCATCCCCAACGCCCTTACCGTTACTCTGAATGACGGAACGGTGCTGGA
TGAGGTGGTTGTCGAGGCACCCTTGGGCCACCGCCTGCGGCGTGAGGAGG
CCAAGCCGGAGATTCTGGCCAAGTACAAGCGTCATCTGCAGGCGCACTTT
GACCAGGCCCGCATTGACCAGCTGATTCAGGTTGGCTGGGACCAGGCCGC
TCTTGAGGGCTACGACGTTGACCAGTACGTCGACTTGTATGTCAAGGACC
AGATGGTGGCAGCTCAGTAGAGTCATGATTGTATATGCGGCATGGAGAAA
TTATACCATAATCAGAAGCGAGACTTTGGAGACATCGTGTATGAGATTAA
CGAGAATTAGCCACTGATAGAATACATTGAATTACCATATGGTGGGACAG
CGATAATCAGGATTCTGCAGGCAGGAGGAATGAATAGAGGTCGGGCTAGG
ATACTAGTGGATGGCCTCGCTGCCGACGGTTACGCGACACGCTGCCGAAC
CCGCCAACAACAAGATCCATGTTTATCAGTCAGGATCAAGAGCTTGCCGA
CCCTCCCTATGTTATCATCTTGCAGAGTAGTCGAGCTAGTAGATTTCCCC
ATACAGACAACAGCT
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Coding sequence (CDS) from alignment at ch3:3485520..3487884+

>KJC3_003940-T2 ID=KJC3_003940-T2|Name=KJC3_003940-T2|organism=Aspergillus niger KJC3|type=CDS|length=6036bp|location=Sequence derived from alignment at ch3:3485520..3487884+ (Aspergillus niger KJC3)
ATGTCTCCCCTTCAACATGCTGCTCCCGTCGTTCCCGGCGATAAGCCGTA
CGACCCAGAGATCAAGGATATGGCCGACTATATCCACAACTACAATGTGA
ACTCGGACTTGGCGTATGACACCGCCCGTTTGGTGTTCCTCGACACTCTG
GGGTGCGGTTTGGAGGCATTGAAGTTCAAGGAATGCTCCAAGCTCCTGGG
CCCGGTGGTGGACGGCACCGTGGTGCCCAACGGAACTCGCGTTCCTGGAA
CGCCCTACCAGCTGGACCCTGTCAACGGCGCTTTCAACATTGGCGCTATG
ATCCGCTGGCTGGACTACAACGACTGCTGGTTGGCTGCTGAATGGGGTCA
CCCCTCGGACAACCTGGGTGGAATCCTTGCTGTCGCCGACTGGGTTTCTC
GCACAAACCGTGCGGGCGGAAACATTGCCAACGGCAAGATCTTCAAGGTC
AAGGACGTCCTGGAGGCCATGATCAAGGCGCACGAGATTCAGGGTGTGTT
GGCGCTGGAGAACTCCTTCAACAAGGTCGGCTTGGACCACGTCGTTCTCG
TCAAGGTTGCTACCACTGCTGTCGTTGCAAAGATGCTCGGCCTTAGCGAG
AAGCAGACCGCAGATGCGATTACCCAAGCATTCGTGGACGGACAGTCTCT
CCGTACCTACAGACACTCCCCCAACACCATGTCGAGGAAGTCCTGGGCTG
CGGGTGACGCATGCCAGCGGGCCGTGAACCTCGTCTTGAAGGTGCAGAAG
GGCGAGGGTGGCCTGCACACCGTCCTGTCTGCTCCCGTTTGGGGTTTCTA
TGATGTCCTGTTCAAGGGCAACAAGTTCCAGTTCCAGCGCCCCTACGGTA
GTTATGTCATGGAGAATGTTCTGTTCAAGGTCTCCTACCCGGCCGAGTTC
CACTCCCAGACCGCGATCGAGGCCGCTGAGATGGTTAACGTGAAGCTCAA
GGCTCTCGGAAAGACTGCCGCCGACATTAAGGAGATCAGAAACCGCACCC
ACGAGGCGTGCATTCGTATCATCGACAAGCAGTTCAAGGCGATGGACAAC
TTCGCCGATCGTGACCACTGTGTTCAGTACATGGTTGCGACCATGTTGGT
CTTCAACCGGTTGACTGCCAACGACTACGCCGACGGATCGGAGGCTGCTA
CTTCTCAGCTCCTGGAAGACCTGCGCAAGCGCATTTACTGTGTCGAGGAT
CCCCAGTTCACTAAGGATTACCACGACCCTGCGAAGCGCACCATCCCCAA
CGCCCTTACCGTTACTCTGAATGACGGAACGGTGCTGGATGAGGTGGTTG
TCGAGGCACCCTTGGGCCACCGCCTGCGGCGTGAGGAGGCCAAGCCGGAG
ATTCTGGCCAAGTACAAGCGTCATCTGCAGGCGCACTTTGACCAGGCCCG
CATTGACCAGCTGATTCAGGTTGGCTGGGACCAGGCCGCTCTTGAGGGCT
ACGACGTTGACCAGTACGTCGACTTGTATGTCAAGGACCAGATGGTGGCA
GCTCAGTAGATGTCTCCCCTTCAACATGCTGCTCCCGTCGTTCCCGGCGA
TAAGCCGTACGACCCAGAGATCAAGGATATGGCCGACTATATCCACAACT
ACAATGTGAACTCGGACTTGGCGTATGACACCGCCCGTTTGGTGTTCCTC
GACACTCTGGGGTGCGGTTTGGAGGCATTGAAGTTCAAGGAATGCTCCAA
GCTCCTGGGCCCGGTGGTGGACGGCACCGTGGTGCCCAACGGAACTCGCG
TTCCTGGAACGCCCTACCAGCTGGACCCTGTCAACGGCGCTTTCAACATT
GGCGCTATGATCCGCTGGCTGGACTACAACGACTGCTGGTTGGCTGCTGA
ATGGGGTCACCCCTCGGACAACCTGGGTGGAATCCTTGCTGTCGCCGACT
GGGTTTCTCGCACAAACCGTGCGGGCGGAAACATTGCCAACGGCAAGATC
TTCAAGGTCAAGGACGTCCTGGAGGCCATGATCAAGGCGCACGAGATTCA
GGGTGTGTTGGCGCTGGAGAACTCCTTCAACAAGGTCGGCTTGGACCACG
TCGTTCTCGTCAAGGTTGCTACCACTGCTGTCGTTGCAAAGATGCTCGGC
CTTAGCGAGAAGCAGACCGCAGATGCGATTACCCAAGCATTCGTGGACGG
ACAGTCTCTCCGTACCTACAGACACTCCCCCAACACCATGTCGAGGAAGT
CCTGGGCTGCGGGTGACGCATGCCAGCGGGCCGTGAACCTCGTCTTGAAG
GTGCAGAAGGGCGAGGGTGGCCTGCACACCGTCCTGTCTGCTCCCGTTTG
GGGTTTCTATGATGTCCTGTTCAAGGGCAACAAGTTCCAGTTCCAGCGCC
CCTACGGTAGTTATGTCATGGAGAATGTTCTGTTCAAGGTCTCCTACCCG
GCCGAGTTCCACTCCCAGACCGCGATCGAGGCCGCTGAGATGGTTAACGT
GAAGCTCAAGGCTCTCGGAAAGACTGCCGCCGACATTAAGGAGATCAGAA
ACCGCACCCACGAGGCGTGCATTCGTATCATCGACAAGCAGTTCAAGGCG
ATGGACAACTTCGCCGATCGTGACCACTGTGTTCAGTACATGGTTGCGAC
CATGTTGGTCTTCAACCGGTTGACTGCCAACGACTACGCCGACGGATCGG
AGGCTGCTACTTCTCAGCTCCTGGAAGACCTGCGCAAGCGCATTTACTGT
GTCGAGGATCCCCAGTTCACTAAGGATTACCACGACCCTGCGAAGCGCAC
CATCCCCAACGCCCTTACCGTTACTCTGAATGACGGAACGGTGCTGGATG
AGGTGGTTGTCGAGGCACCCTTGGGCCACCGCCTGCGGCGTGAGGAGGCC
AAGCCGGAGATTCTGGCCAAGTACAAGCGTCATCTGCAGGCGCACTTTGA
CCAGGCCCGCATTGACCAGCTGATTCAGGTTGGCTGGGACCAGGCCGCTC
TTGAGGGCTACGACGTTGACCAGTACGTCGACTTGTATGTCAAGGACCAG
ATGGTGGCAGCTCAGTAGATGTCTCCCCTTCAACATGCTGCTCCCGTCGT
TCCCGGCGATAAGCCGTACGACCCAGAGATCAAGGATATGGCCGACTATA
TCCACAACTACAATGTGAACTCGGACTTGGCGTATGACACCGCCCGTTTG
GTGTTCCTCGACACTCTGGGGTGCGGTTTGGAGGCATTGAAGTTCAAGGA
ATGCTCCAAGCTCCTGGGCCCGGTGGTGGACGGCACCGTGGTGCCCAACG
GAACTCGCGTTCCTGGAACGCCCTACCAGCTGGACCCTGTCAACGGCGCT
TTCAACATTGGCGCTATGATCCGCTGGCTGGACTACAACGACTGCTGGTT
GGCTGCTGAATGGGGTCACCCCTCGGACAACCTGGGTGGAATCCTTGCTG
TCGCCGACTGGGTTTCTCGCACAAACCGTGCGGGCGGAAACATTGCCAAC
GGCAAGATCTTCAAGGTCAAGGACGTCCTGGAGGCCATGATCAAGGCGCA
CGAGATTCAGGGTGTGTTGGCGCTGGAGAACTCCTTCAACAAGGTCGGCT
TGGACCACGTCGTTCTCGTCAAGGTTGCTACCACTGCTGTCGTTGCAAAG
ATGCTCGGCCTTAGCGAGAAGCAGACCGCAGATGCGATTACCCAAGCATT
CGTGGACGGACAGTCTCTCCGTACCTACAGACACTCCCCCAACACCATGT
CGAGGAAGTCCTGGGCTGCGGGTGACGCATGCCAGCGGGCCGTGAACCTC
GTCTTGAAGGTGCAGAAGGGCGAGGGTGGCCTGCACACCGTCCTGTCTGC
TCCCGTTTGGGGTTTCTATGATGTCCTGTTCAAGGGCAACAAGTTCCAGT
TCCAGCGCCCCTACGGTAGTTATGTCATGGAGAATGTTCTGTTCAAGGTC
TCCTACCCGGCCGAGTTCCACTCCCAGACCGCGATCGAGGCCGCTGAGAT
GGTTAACGTGAAGCTCAAGGCTCTCGGAAAGACTGCCGCCGACATTAAGG
AGATCAGAAACCGCACCCACGAGGCGTGCATTCGTATCATCGACAAGCAG
TTCAAGGCGATGGACAACTTCGCCGATCGTGACCACTGTGTTCAGTACAT
GGTTGCGACCATGTTGGTCTTCAACCGGTTGACTGCCAACGACTACGCCG
ACGGATCGGAGGCTGCTACTTCTCAGCTCCTGGAAGACCTGCGCAAGCGC
ATTTACTGTGTCGAGGATCCCCAGTTCACTAAGGATTACCACGACCCTGC
GAAGCGCACCATCCCCAACGCCCTTACCGTTACTCTGAATGACGGAACGG
TGCTGGATGAGGTGGTTGTCGAGGCACCCTTGGGCCACCGCCTGCGGCGT
GAGGAGGCCAAGCCGGAGATTCTGGCCAAGTACAAGCGTCATCTGCAGGC
GCACTTTGACCAGGCCCGCATTGACCAGCTGATTCAGGTTGGCTGGGACC
AGGCCGCTCTTGAGGGCTACGACGTTGACCAGTACGTCGACTTGTATGTC
AAGGACCAGATGGTGGCAGCTCAGTAGATGTCTCCCCTTCAACATGCTGC
TCCCGTCGTTCCCGGCGATAAGCCGTACGACCCAGAGATCAAGGATATGG
CCGACTATATCCACAACTACAATGTGAACTCGGACTTGGCGTATGACACC
GCCCGTTTGGTGTTCCTCGACACTCTGGGGTGCGGTTTGGAGGCATTGAA
GTTCAAGGAATGCTCCAAGCTCCTGGGCCCGGTGGTGGACGGCACCGTGG
TGCCCAACGGAACTCGCGTTCCTGGAACGCCCTACCAGCTGGACCCTGTC
AACGGCGCTTTCAACATTGGCGCTATGATCCGCTGGCTGGACTACAACGA
CTGCTGGTTGGCTGCTGAATGGGGTCACCCCTCGGACAACCTGGGTGGAA
TCCTTGCTGTCGCCGACTGGGTTTCTCGCACAAACCGTGCGGGCGGAAAC
ATTGCCAACGGCAAGATCTTCAAGGTCAAGGACGTCCTGGAGGCCATGAT
CAAGGCGCACGAGATTCAGGGTGTGTTGGCGCTGGAGAACTCCTTCAACA
AGGTCGGCTTGGACCACGTCGTTCTCGTCAAGGTTGCTACCACTGCTGTC
GTTGCAAAGATGCTCGGCCTTAGCGAGAAGCAGACCGCAGATGCGATTAC
CCAAGCATTCGTGGACGGACAGTCTCTCCGTACCTACAGACACTCCCCCA
ACACCATGTCGAGGAAGTCCTGGGCTGCGGGTGACGCATGCCAGCGGGCC
GTGAACCTCGTCTTGAAGGTGCAGAAGGGCGAGGGTGGCCTGCACACCGT
CCTGTCTGCTCCCGTTTGGGGTTTCTATGATGTCCTGTTCAAGGGCAACA
AGTTCCAGTTCCAGCGCCCCTACGGTAGTTATGTCATGGAGAATGTTCTG
TTCAAGGTCTCCTACCCGGCCGAGTTCCACTCCCAGACCGCGATCGAGGC
CGCTGAGATGGTTAACGTGAAGCTCAAGGCTCTCGGAAAGACTGCCGCCG
ACATTAAGGAGATCAGAAACCGCACCCACGAGGCGTGCATTCGTATCATC
GACAAGCAGTTCAAGGCGATGGACAACTTCGCCGATCGTGACCACTGTGT
TCAGTACATGGTTGCGACCATGTTGGTCTTCAACCGGTTGACTGCCAACG
ACTACGCCGACGGATCGGAGGCTGCTACTTCTCAGCTCCTGGAAGACCTG
CGCAAGCGCATTTACTGTGTCGAGGATCCCCAGTTCACTAAGGATTACCA
CGACCCTGCGAAGCGCACCATCCCCAACGCCCTTACCGTTACTCTGAATG
ACGGAACGGTGCTGGATGAGGTGGTTGTCGAGGCACCCTTGGGCCACCGC
CTGCGGCGTGAGGAGGCCAAGCCGGAGATTCTGGCCAAGTACAAGCGTCA
TCTGCAGGCGCACTTTGACCAGGCCCGCATTGACCAGCTGATTCAGGTTG
GCTGGGACCAGGCCGCTCTTGAGGGCTACGACGTTGACCAGTACGTCGAC
TTGTATGTCAAGGACCAGATGGTGGCAGCTCAGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0019629propionate catabolic process, 2-methylcitrate cycle
Vocabulary: Molecular Function
TermDefinition
GO:00475472-methylcitrate dehydratase activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0016829lyase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PDH1_1KJC3_003940Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003940-T2KJC3_003940-T2-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003940-T2.utr5p1KJC3_003940-T2.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_003940-T2.utr5p2KJC3_003940-T2.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003940-T2.exon1KJC3_003940-T2.exon1Aspergillus niger KJC3exon
KJC3_003940-T2.exon2KJC3_003940-T2.exon2Aspergillus niger KJC3exon
KJC3_003940-T2.exon3KJC3_003940-T2.exon3Aspergillus niger KJC3exon
KJC3_003940-T2.exon4KJC3_003940-T2.exon4Aspergillus niger KJC3exon
KJC3_003940-T2.exon5KJC3_003940-T2.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003940-T2.cdsKJC3_003940-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003940-T2.utr3p1KJC3_003940-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036148
DBxrefInterPro:IPR012705
DBxrefInterPro:IPR042183
DBxrefInterPro:IPR042188
DBxrefInterPro:IPR005656
DBxrefPFAM:PF03972
Product variant 2
ProductATP-binding cassette transporter CGR1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:3485520..3487884 +
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