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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3492746..3496754+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_003943-T1 ID=KJC3_003943-T1|Name=KJC3_003943-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4009bp|location=Sequence derived from alignment at ch3:3492746..3496754+ (Aspergillus niger KJC3)
TGTCCTCTTGGTTGGTTTGTCTCGGCTCGGTGTCTCTAATGGCCCTGCTT
CGACCAGGTTACATGTCAAGTCTGACAGGACATTCCTCCCCGACAGGCAC
ACCGCGAGCAAGTGGAGCAACGGCAAGCACGCGATAGAACCGATAGACGA
TGCATGGGCTCGGCAGGAGGACTCGGTCCAAGACTGGTAAGGATCCCCAC
CAGTTCTGTCTTACGCAAATTGTCTAGGTTGCTTTTTTTGTCCCAGAACG
GTCGGACTTACTGCACCATAGGTTGTCGCACGTGTAGAATTCGCAAGGTC
AAATGCGACGAAGAAAAACTATTCGTTCCCGGTCAGGAGGAGCCACAATG
CCGGCGTTGCACAGCGGCCCGGATCGTATGTGAGTGGAAGGGCGGCCCCA
TCCCCCGGGGTCCAGCAAAAAGGCCCGGAAAAGACCCTCGCTCGGTGGAA
GCGCAGATGGTCCGTCAGTCTGTTCCGTCTCCTGCACGCTCTTTATCGCC
CACCGGGGCTGCTGGGAATAGCATTCAAGCGGCCAATTCCCTTGTTATAT
CGGACTTTGATCGCTCGTGCTTGAATTATCTTCAGGATTCCGCGCTGGTC
GTGATCCTCGGAAAGCATTGGCCATGGTCTACAGTCTCTTATGCATACCA
CAAAATCGCAGTTAAAGAACCCATGGTCATGAGCATGATGTTGGCGACTA
CATCTAGTGAGATCAACCGGTCGCGTCTGTACGACCGGGACAAGACGGAG
GGACCATGTACTATTGAGAGCCTGTCCGACATGGACAGTAGATTGCACTA
TGGTCGGGCTCTCTCTGGCCTCCGGGAAGCGCTGAAACCAGACGTCAAGC
CCCCGGAGCAGATCGAAGCCATCTTCATCACCTTGTGGATGATGATTGAC
TATGAGAACCGATTCGGCAGCGGGACTGCTGGAATCAATATTCACATTCG
CGGAATCGAGAGTCTACTCTTCAACCACGTCGTCCCATCACTCAAACAAA
TAGGGCCTCCAGATATCGCAATTGCAGAAGCAAGTTCAAAGACTGCACTA
TGTCATGTCACAGACGAGGCCCAGGGCACGAGCGCATGTGACAGCCCTGG
GCCGCAACAGACTGCCGAATTGTCCAAGAATAGGCTTCGACATACAGCGG
TCCCTCTTTTTCTGCTTTGGACTTTGTACTTTTTCACACCGGGCGCTTTG
CTCTCTGGCCCAGGCGCTGCAAGGCTCGATGCCGACCTCTTCCGGTTTTT
CATGAAAGAGGAAGCAGGAAGTGTGGGATTGAGTCTTTCCGAGCTATACA
GGATTGGCAGACAGTCACCGTCTCGATTCTGGGGGGATTCCTACCCCACC
ACAGCCCAGCTGGATGATATGGAGAATATGCCCGGGCTATCGCTGTATCA
TCGAAGTCATGTACTGCAATTCAAGATTACGGAGTTATTTCGGCAAGGAA
GTCATTCGGTCACGACGGGTCTTGAGATCATTAGTGAACTCAACATGTTA
TCTGATGTAAGTTCCCGTCTTAGTCCTGCAGATGACCTGTCATTTATCTT
CATATGGATGGTGACGGCGACTAATCCGCTGATCAGGAATACGATACCTT
GTTGGGTTCCGCCAAGTCTGCGCCCTCGTGTGAAATCGTGGGTGACGGAC
GTCGCGTGATGGAAACGATCTTTTGGGCAGCCATTACTTACTACGGCACG
ATCGTGTACTTCCACCTGTGCTTCAAAGACACCCTGGCCAAAGGTATGCA
GGGTGCAGGGATGATGACTCTGCATGATGCCGTTTCCCAGGTTCTGGAAC
TCTCTTTGAAGCTACATCGCAGCAGACCGCACTTGATGGTGCGCATCACG
TGGCCTCTCTTCATCGCGGGGATAGCCACATCTGACAGGATCTACCAAGA
CTGGGTGTCGTTTCGGCTGCGCGAGCTTGGTCGCTATGGGCTCAACTACA
GCCGGGTCAGCGCCCGGTTTGACGAGATCATCCAAGGAGGCGATCCCTTT
GCGCACGGACGAAGGCCATTGTGCGCGCAGTAGTGCAATTCGGCAAGACG
TTGAAGTGAGTTGATAGGATATCTGGATCCCAGTGGTGACGACGATAAGG
CCAGGATAGCCCGGGGATCTGCTTGACGTGTGGTTCTAGAAAGTTTCGGG
AAGGGGATCCTAGCCAAATCGTGGGGACTTCCCAGACTGCCAACATCTGC
TACACTCTAGACGTGCAGCTAGTGGTCGTACATTATCGCGCTCATTCAGG
GTCTGCCATGCATAACGACTATGCTTGGTTCTAAAGGTGACATCGTGGTC
ATGGTGACGACCCTATTCGAACGAGTCAAACGGGCATGGACGGGCTTAGA
GTTTGCCAACCATAGCGCTAGTCTTGGCAAAGATATACACGGAAACAAAG
GACTATCCATTGCGGTCACTGGCTATCTGCAATGTTGTAGCGGGCTATTC
GCTGAAATAAGATGTTTGACAAATCGGGCATCTATACTGATGGTATTCGA
ACCATGATGCGAGACAGGACGCATGAAAGACATGGTGGCAACGGTTAAGG
ACCAGGATGTTTCTCCGCCCAGACACTCGATCGGCCTCCATCGCGTCATG
CAGGCTGGGTTCGTCGTGGGGTGATGGTGCGACCCAGGCCGGCTCGGGAA
AAGGAAGGGTATCTTGGGACGCTGCTAGGGTTGACAGACATATGGGACTA
CCAAGGAAGCCATGCGTCAGTTCTATGGAACGCAAGTCCGGCCAAGACCG
CTACCAGCAGTGTGTCCCCGCATCTCGGCCAAGCGTTGGCGCCACCCAAA
GGAGAACAGCCTTACCAGGATTCCTGAGCGTATAGCCGGTCCTCGCAGCT
CGCGTGTGTCTGCTCGTCCAGCCATCGATCGACCGATACCTGCCGCATTA
TGCCGCCATCGGTGAGGTTGCGGAGTTCGCTACTGCGTCTGGCAGTTGCT
CGTCGACGATGATGGTACAACACGATACTGACAGGTTAGAGATACGTCTA
AACAATGGAGTTCAATCAGCGTGCAGCATCTCCACCAGGCATGCATGCAG
CAGTTGAGCTTCCAATAGGGGACACTGGAACACTAGCACTTACAATGGGA
TCGTACTCAAGGCCGCAAACAACACCACAGCACCAACGATGACACCCACT
ATTCCGGTGTGGTGCGTATCCCCAGCCATCGGAAGTATACGGAAAAAAAC
AACAAAGATAAGATCGATAGGTCAACTGCGCTTAGGAGATGACGCGTCGG
ATAAATCGGCTCGAAGCCAGCGACTCACTCCTCACGACAGCCTCCAAACA
GCATCAGCATCAGCATCAGCAGGGGAAAGTTGGTGGGGATGGTCGCATGG
GAGGGGGGGATACTGGGAATAGGATCCATTACCGGCGGGGGAATTGGGGC
AGGTCTCCGAGGACAGCGACGGCTGCATTTAAAGTTGAGCCAGCGAGTGG
CCCTCAGACCCCCGCGCAGCAGCACGCCAAGGCCACCGGACAGACACCCT
GGGATGCAGGCCATCCGAGGCGGGCCAATCCTCAGGATTTTTGCCTCAGG
AGACGCCAAGTCTCCGCGCTCCGGAACACCTTGGCGTTTCCGCTGGGGCC
ACTGGGCCGCTGCACCAATCACATCGCTCCGTCTCAGGTCTCGGTGCTCG
TACTGGCTCACGTGGCGGAATGCTGTTGTCGTATGCGTCATAATCCCCAA
AGAGGCGAGACTCGCCGACTTCGCGCCCAAGGTTGGCGCCAAGGCATCGC
TTCCGGGGGTTCTGTGATTGGCGCTTGGCGGGCTGGGCAGTCTGCTCGGC
CTTGGGTGTCTATCTTCCATGCCAAGACTGCTTCCCAGGTCCGGCGATAG
AGGAAGCAACTTATAAGAAGGAGGAATTCCCCGGAATCATGTCGAGGAGA
GAGAGTTTAGAATTTGGAAATAAGAAGCAGAATCAGGATCTAGACCAGTT
CAGATCAGATCAATCTAGTGCTTTGCCTCAAGTGTATGGACTCTCATTCC
ATAGAGGAT back to topCoding sequence (CDS) from alignment at ch3:3492746..3496754+ >KJC3_003943-T1 ID=KJC3_003943-T1|Name=KJC3_003943-T1|organism=Aspergillus niger KJC3|type=CDS|length=5157bp|location=Sequence derived from alignment at ch3:3492746..3496754+ (Aspergillus niger KJC3)
ATGCATGGGCTCGGCAGGAGGACTCGGTCCAAGACTGGTTGTCGCACGTG
TAGAATTCGCAAGGTCAAATGCGACGAAGAAAAACTATTCGTTCCCGGTC
AGGAGGAGCCACAATGCCGGCGTTGCACAGCGGCCCGGATCGTATGTGAG
TGGAAGGGCGGCCCCATCCCCCGGGGTCCAGCAAAAAGGCCCGGAAAAGA
CCCTCGCTCGGTGGAAGCGCAGATGGTCCGTCAGTCTGTTCCGTCTCCTG
CACGCTCTTTATCGCCCACCGGGGCTGCTGGGAATAGCATTCAAGCGGCC
AATTCCCTTGTTATATCGGACTTTGATCGCTCGTGCTTGAATTATCTTCA
GGATTCCGCGCTGGTCGTGATCCTCGGAAAGCATTGGCCATGGTCTACAG
TCTCTTATGCATACCACAAAATCGCAGTTAAAGAACCCATGGTCATGAGC
ATGATGTTGGCGACTACATCTAGTGAGATCAACCGGTCGCGTCTGTACGA
CCGGGACAAGACGGAGGGACCATGTACTATTGAGAGCCTGTCCGACATGG
ACAGTAGATTGCACTATGGTCGGGCTCTCTCTGGCCTCCGGGAAGCGCTG
AAACCAGACGTCAAGCCCCCGGAGCAGATCGAAGCCATCTTCATCACCTT
GTGGATGATGATTGACTATGAGAACCGATTCGGCAGCGGGACTGCTGGAA
TCAATATTCACATTCGCGGAATCGAGAGTCTACTCTTCAACCACGTCGTC
CCATCACTCAAACAAATAGGGCCTCCAGATATCGCAATTGCAGAAGCAAG
TTCAAAGACTGCACTATGTCATGTCACAGACGAGGCCCAGGGCACGAGCG
CATGTGACAGCCCTGGGCCGCAACAGACTGCCGAATTGTCCAAGAATAGG
CTTCGACATACAGCGGTCCCTCTTTTTCTGCTTTGGACTTTGTACTTTTT
CACACCGGGCGCTTTGCTCTCTGGCCCAGGCGCTGCAAGGCTCGATGCCG
ACCTCTTCCGGTTTTTCATGAAAGAGGAAGCAGGAAGTGTGGGATTGAGT
CTTTCCGAGCTATACAGGATTGGCAGACAGTCACCGTCTCGATTCTGGGG
GGATTCCTACCCCACCACAGCCCAGCTGGATGATATGGAGAATATGCCCG
GGCTATCGCTGTATCATCGAAGTCATGTACTGCAATTCAAGATTACGGAG
TTATTTCGGCAAGGAAGTCATTCGGTCACGACGGGTCTTGAGATCATTAG
TGAACTCAACATGTTATCTGATGAATACGATACCTTGTTGGGTTCCGCCA
AGTCTGCGCCCTCGTGTGAAATCGTGGGTGACGGACGTCGCGTGATGGAA
ACGATCTTTTGGGCAGCCATTACTTACTACGGCACGATCGTGTACTTCCA
CCTGTGCTTCAAAGACACCCTGGCCAAAGGTATGCAGGGTGCAGGGATGA
TGACTCTGCATGATGCCGTTTCCCAGGTTCTGGAACTCTCTTTGAAGCTA
CATCGCAGCAGACCGCACTTGATGGTGCGCATCACGTGGCCTCTCTTCAT
CGCGGGGATAGCCACATCTGACAGGATCTACCAAGACTGGGTGTCGTTTC
GGCTGCGCGAGCTTGGTCGCTATGGGCTCAACTACAGCCGGGTCAGCGCC
CGGTTTGACGAGATCATCCAAGGAGGCGATCCCTTTGCGCACGGACGAAG
GCCATTGTGCGCGCAGTAGATGCATGGGCTCGGCAGGAGGACTCGGTCCA
AGACTGGTTGTCGCACGTGTAGAATTCGCAAGGTCAAATGCGACGAAGAA
AAACTATTCGTTCCCGGTCAGGAGGAGCCACAATGCCGGCGTTGCACAGC
GGCCCGGATCGTATGTGAGTGGAAGGGCGGCCCCATCCCCCGGGGTCCAG
CAAAAAGGCCCGGAAAAGACCCTCGCTCGGTGGAAGCGCAGATGGTCCGT
CAGTCTGTTCCGTCTCCTGCACGCTCTTTATCGCCCACCGGGGCTGCTGG
GAATAGCATTCAAGCGGCCAATTCCCTTGTTATATCGGACTTTGATCGCT
CGTGCTTGAATTATCTTCAGGATTCCGCGCTGGTCGTGATCCTCGGAAAG
CATTGGCCATGGTCTACAGTCTCTTATGCATACCACAAAATCGCAGTTAA
AGAACCCATGGTCATGAGCATGATGTTGGCGACTACATCTAGTGAGATCA
ACCGGTCGCGTCTGTACGACCGGGACAAGACGGAGGGACCATGTACTATT
GAGAGCCTGTCCGACATGGACAGTAGATTGCACTATGGTCGGGCTCTCTC
TGGCCTCCGGGAAGCGCTGAAACCAGACGTCAAGCCCCCGGAGCAGATCG
AAGCCATCTTCATCACCTTGTGGATGATGATTGACTATGAGAACCGATTC
GGCAGCGGGACTGCTGGAATCAATATTCACATTCGCGGAATCGAGAGTCT
ACTCTTCAACCACGTCGTCCCATCACTCAAACAAATAGGGCCTCCAGATA
TCGCAATTGCAGAAGCAAGTTCAAAGACTGCACTATGTCATGTCACAGAC
GAGGCCCAGGGCACGAGCGCATGTGACAGCCCTGGGCCGCAACAGACTGC
CGAATTGTCCAAGAATAGGCTTCGACATACAGCGGTCCCTCTTTTTCTGC
TTTGGACTTTGTACTTTTTCACACCGGGCGCTTTGCTCTCTGGCCCAGGC
GCTGCAAGGCTCGATGCCGACCTCTTCCGGTTTTTCATGAAAGAGGAAGC
AGGAAGTGTGGGATTGAGTCTTTCCGAGCTATACAGGATTGGCAGACAGT
CACCGTCTCGATTCTGGGGGGATTCCTACCCCACCACAGCCCAGCTGGAT
GATATGGAGAATATGCCCGGGCTATCGCTGTATCATCGAAGTCATGTACT
GCAATTCAAGATTACGGAGTTATTTCGGCAAGGAAGTCATTCGGTCACGA
CGGGTCTTGAGATCATTAGTGAACTCAACATGTTATCTGATGAATACGAT
ACCTTGTTGGGTTCCGCCAAGTCTGCGCCCTCGTGTGAAATCGTGGGTGA
CGGACGTCGCGTGATGGAAACGATCTTTTGGGCAGCCATTACTTACTACG
GCACGATCGTGTACTTCCACCTGTGCTTCAAAGACACCCTGGCCAAAGGT
ATGCAGGGTGCAGGGATGATGACTCTGCATGATGCCGTTTCCCAGGTTCT
GGAACTCTCTTTGAAGCTACATCGCAGCAGACCGCACTTGATGGTGCGCA
TCACGTGGCCTCTCTTCATCGCGGGGATAGCCACATCTGACAGGATCTAC
CAAGACTGGGTGTCGTTTCGGCTGCGCGAGCTTGGTCGCTATGGGCTCAA
CTACAGCCGGGTCAGCGCCCGGTTTGACGAGATCATCCAAGGAGGCGATC
CCTTTGCGCACGGACGAAGGCCATTGTGCGCGCAGTAGATGCATGGGCTC
GGCAGGAGGACTCGGTCCAAGACTGGTTGTCGCACGTGTAGAATTCGCAA
GGTCAAATGCGACGAAGAAAAACTATTCGTTCCCGGTCAGGAGGAGCCAC
AATGCCGGCGTTGCACAGCGGCCCGGATCGTATGTGAGTGGAAGGGCGGC
CCCATCCCCCGGGGTCCAGCAAAAAGGCCCGGAAAAGACCCTCGCTCGGT
GGAAGCGCAGATGGTCCGTCAGTCTGTTCCGTCTCCTGCACGCTCTTTAT
CGCCCACCGGGGCTGCTGGGAATAGCATTCAAGCGGCCAATTCCCTTGTT
ATATCGGACTTTGATCGCTCGTGCTTGAATTATCTTCAGGATTCCGCGCT
GGTCGTGATCCTCGGAAAGCATTGGCCATGGTCTACAGTCTCTTATGCAT
ACCACAAAATCGCAGTTAAAGAACCCATGGTCATGAGCATGATGTTGGCG
ACTACATCTAGTGAGATCAACCGGTCGCGTCTGTACGACCGGGACAAGAC
GGAGGGACCATGTACTATTGAGAGCCTGTCCGACATGGACAGTAGATTGC
ACTATGGTCGGGCTCTCTCTGGCCTCCGGGAAGCGCTGAAACCAGACGTC
AAGCCCCCGGAGCAGATCGAAGCCATCTTCATCACCTTGTGGATGATGAT
TGACTATGAGAACCGATTCGGCAGCGGGACTGCTGGAATCAATATTCACA
TTCGCGGAATCGAGAGTCTACTCTTCAACCACGTCGTCCCATCACTCAAA
CAAATAGGGCCTCCAGATATCGCAATTGCAGAAGCAAGTTCAAAGACTGC
ACTATGTCATGTCACAGACGAGGCCCAGGGCACGAGCGCATGTGACAGCC
CTGGGCCGCAACAGACTGCCGAATTGTCCAAGAATAGGCTTCGACATACA
GCGGTCCCTCTTTTTCTGCTTTGGACTTTGTACTTTTTCACACCGGGCGC
TTTGCTCTCTGGCCCAGGCGCTGCAAGGCTCGATGCCGACCTCTTCCGGT
TTTTCATGAAAGAGGAAGCAGGAAGTGTGGGATTGAGTCTTTCCGAGCTA
TACAGGATTGGCAGACAGTCACCGTCTCGATTCTGGGGGGATTCCTACCC
CACCACAGCCCAGCTGGATGATATGGAGAATATGCCCGGGCTATCGCTGT
ATCATCGAAGTCATGTACTGCAATTCAAGATTACGGAGTTATTTCGGCAA
GGAAGTCATTCGGTCACGACGGGTCTTGAGATCATTAGTGAACTCAACAT
GTTATCTGATGAATACGATACCTTGTTGGGTTCCGCCAAGTCTGCGCCCT
CGTGTGAAATCGTGGGTGACGGACGTCGCGTGATGGAAACGATCTTTTGG
GCAGCCATTACTTACTACGGCACGATCGTGTACTTCCACCTGTGCTTCAA
AGACACCCTGGCCAAAGGTATGCAGGGTGCAGGGATGATGACTCTGCATG
ATGCCGTTTCCCAGGTTCTGGAACTCTCTTTGAAGCTACATCGCAGCAGA
CCGCACTTGATGGTGCGCATCACGTGGCCTCTCTTCATCGCGGGGATAGC
CACATCTGACAGGATCTACCAAGACTGGGTGTCGTTTCGGCTGCGCGAGC
TTGGTCGCTATGGGCTCAACTACAGCCGGGTCAGCGCCCGGTTTGACGAG
ATCATCCAAGGAGGCGATCCCTTTGCGCACGGACGAAGGCCATTGTGCGC
GCAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003943-T1.utr5p1 | KJC3_003943-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_003943-T1.utr3p1 | KJC3_003943-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3492746..3496754 + |
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