You are here

Home

KJC3_003986-T1, KJC3_003986-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_003986-T1
Unique NameKJC3_003986-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:3609850..3611407+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_003986-T1 ID=KJC3_003986-T1|Name=KJC3_003986-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1558bp|location=Sequence derived from alignment at ch3:3609850..3611407+ (Aspergillus niger KJC3)
TATCTCACTGTCTCCTCTCCTAGCCCAGAACTTACTGAGCAGGCAGTAAT
CCTCCACCATGTTCTCCCGCCGAAACCTCGTCGCCCTAGGGCTGGCAGCC
ACCGTCAGCGCCGGCCCCTGTGACATCTACGAAGCCGGCGACACGCCCTG
CGTAGCCGCGCACAGCACCACCCGCGCCCTATACAGCTCCTTCAGCGGCG
CCCTCTACCAGCTCCAACGTGGCTCCGACGACACCACCACCACCATCTCC
CCGCTCACAGCCGGCGGCGTCGCCGACGCCTCCGCCCAAGACACCTTCTG
TGCCAACACCACCTGCTTGATCACCATCATCTACGACCAATCCGGCAACG
GCAACCACCTGACCCAAGCACCCCCGGGAGGCTTCGACGGCCCCGACGTC
GACGGCTACGACAACCTCGCCAGCGCCATCGGCGCCCCCGTCACCCTCAA
TGGCCAAAAGGCCTACGGCGTGTTCATGTCCCCCGGCACGGGCTACCGTA
ACAACGAAGCCACCGGCACCGCCACCGGCGACGAACCCGAAGGCATGTAC
GCCGTCCTGGACGGCACGCACTACAACGACGCCTGCTGCTTCGACTACGG
CAACGCCGAGACCAGCAGCACCGACACTGGCGCCGGCCACATGGAGGCCA
TCTACCTCGGGAACAGCACCACCTGGGGCTACGGCGCCGGTGACGGGCCC
TGGATCATGGTCGATATGGAGAACAACCTCTTCTCCGGTGCTGATGAGGG
ATATAACTCCGGAGATCCCTCGATCAGCTACAGCTTTGTCACTGCCGCGG
TCAAGGGCGGGGCTGATAAGTGGGCTATTCGCGGTGGTAATGCTGCCTCT
GGGTCCCTCTCTACTTACTACAGCGGCGCTCGCCCGGATTACTCCGGCTA
TAACCCCATGAGCAAGGAGGGCGCTATCATCCTGGGTATCGGCGGTGACA
ACAGCAACGGCGCCCAGGGTACCTTCTACGAGGGTGTCATGACCTCCGGC
TACCCGTCGGACGATGTCGAGAACTCCGTCCAGGAGAACATCGTGGCTGC
GAAATACGTCTCCGGCTCGCTGGTCAGCGGCCCGTCGTTCACCTCCGGAG
AGGTGGTCTCGCTGCGTGTCACTACGCCCGGTTACACGACGCGGTATATT
GCGCACACTGACACCACTGTGAACACGCAGGTCGTGGACGACGATAGTTC
CACCACGCTGAAGGAGGAGGCTAGCTGGACCGTGGTGACCGGTCTGGCTA
ATAGTCAGTGCTTCTCGTTCGAGTCGGTTGATACCCCTGGTAGCTATATC
CGGCATTACAACTTTGAGTTGCTGCTTAATGCCAATGATGGCACGAAGCA
GTTCCATGAGGATGCTACTTTCTGTCCTCAGGCGCCGTTGAATGGAGAGG
GTACTTCGTTGAGATCGTGGAGTTATCCGACGAGGTATTTCAGACATTAT
GATAATGTCCTGTATGCTGCTAGTAATGGCGGTGTGCAGACGTTTGATTC
CAAGACATCGTTCAATAATGATGTTAGCTTTGAGATTGAGACGGCGTTTG
CTTCGTAA
back to top

Coding sequence (CDS) from alignment at ch3:3609850..3611407+

>KJC3_003986-T1 ID=KJC3_003986-T1|Name=KJC3_003986-T1|organism=Aspergillus niger KJC3|type=CDS|length=1500bp|location=Sequence derived from alignment at ch3:3609850..3611407+ (Aspergillus niger KJC3)
ATGTTCTCCCGCCGAAACCTCGTCGCCCTAGGGCTGGCAGCCACCGTCAG
CGCCGGCCCCTGTGACATCTACGAAGCCGGCGACACGCCCTGCGTAGCCG
CGCACAGCACCACCCGCGCCCTATACAGCTCCTTCAGCGGCGCCCTCTAC
CAGCTCCAACGTGGCTCCGACGACACCACCACCACCATCTCCCCGCTCAC
AGCCGGCGGCGTCGCCGACGCCTCCGCCCAAGACACCTTCTGTGCCAACA
CCACCTGCTTGATCACCATCATCTACGACCAATCCGGCAACGGCAACCAC
CTGACCCAAGCACCCCCGGGAGGCTTCGACGGCCCCGACGTCGACGGCTA
CGACAACCTCGCCAGCGCCATCGGCGCCCCCGTCACCCTCAATGGCCAAA
AGGCCTACGGCGTGTTCATGTCCCCCGGCACGGGCTACCGTAACAACGAA
GCCACCGGCACCGCCACCGGCGACGAACCCGAAGGCATGTACGCCGTCCT
GGACGGCACGCACTACAACGACGCCTGCTGCTTCGACTACGGCAACGCCG
AGACCAGCAGCACCGACACTGGCGCCGGCCACATGGAGGCCATCTACCTC
GGGAACAGCACCACCTGGGGCTACGGCGCCGGTGACGGGCCCTGGATCAT
GGTCGATATGGAGAACAACCTCTTCTCCGGTGCTGATGAGGGATATAACT
CCGGAGATCCCTCGATCAGCTACAGCTTTGTCACTGCCGCGGTCAAGGGC
GGGGCTGATAAGTGGGCTATTCGCGGTGGTAATGCTGCCTCTGGGTCCCT
CTCTACTTACTACAGCGGCGCTCGCCCGGATTACTCCGGCTATAACCCCA
TGAGCAAGGAGGGCGCTATCATCCTGGGTATCGGCGGTGACAACAGCAAC
GGCGCCCAGGGTACCTTCTACGAGGGTGTCATGACCTCCGGCTACCCGTC
GGACGATGTCGAGAACTCCGTCCAGGAGAACATCGTGGCTGCGAAATACG
TCTCCGGCTCGCTGGTCAGCGGCCCGTCGTTCACCTCCGGAGAGGTGGTC
TCGCTGCGTGTCACTACGCCCGGTTACACGACGCGGTATATTGCGCACAC
TGACACCACTGTGAACACGCAGGTCGTGGACGACGATAGTTCCACCACGC
TGAAGGAGGAGGCTAGCTGGACCGTGGTGACCGGTCTGGCTAATAGTCAG
TGCTTCTCGTTCGAGTCGGTTGATACCCCTGGTAGCTATATCCGGCATTA
CAACTTTGAGTTGCTGCTTAATGCCAATGATGGCACGAAGCAGTTCCATG
AGGATGCTACTTTCTGTCCTCAGGCGCCGTTGAATGGAGAGGGTACTTCG
TTGAGATCGTGGAGTTATCCGACGAGGTATTTCAGACATTATGATAATGT
CCTGTATGCTGCTAGTAATGGCGGTGTGCAGACGTTTGATTCCAAGACAT
CGTTCAATAATGATGTTAGCTTTGAGATTGAGACGGCGTTTGCTTCGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046556alpha-L-arabinofuranosidase activity
Vocabulary: Biological Process
TermDefinition
GO:0046373L-arabinose metabolic process
GO:0031221arabinan metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_003986KJC3_003986Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003986-T1.utr5p1KJC3_003986-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003986-T1.exon1KJC3_003986-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003986-T1.cdsKJC3_003986-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_003986-T1KJC3_003986-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:CBM42
NoteCAZy:GH54
DBxrefInterPro:IPR036195
DBxrefInterPro:IPR013320
DBxrefInterPro:IPR007934
DBxrefInterPro:IPR015289
DBxrefPFAM:PF09206
DBxrefPFAM:PF05270
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:3609850..3611407 +
Powered by Drupal