You are here

Home

KJC3_004003-T1, KJC3_004003-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004003-T1
Unique NameKJC3_004003-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:3649961..3652003-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004003-T1 ID=KJC3_004003-T1|Name=KJC3_004003-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2043bp|location=Sequence derived from alignment at ch3:3649961..3652003- (Aspergillus niger KJC3)
GGCAAAATATGAGATTCTCGTGCAGTCACAAAATACATCAAATAGTCTCC
GGCCTGTCCCAACGGCTCTATACTCAATGCACACCTCGTCCTCCGAAGGA
GGGCCGTGATATGCTGTGCCAAGAACACTTGTATCTGTGCTTGTAGGTCA
TAGTAATGCGGTTCCGAGTACAACACCAAATATCGGATATTATCACAATA
TTCACAGTGGTCTTAGTAAGAGAAAGCCAAGACTTGACGCTAAAGAGCTA
TATAGCATATGATGAATAGCAGTATCCTACTCCGAGGACACCTCCGATAT
ACTATATTACGGAAAGCCATACCCGCCAGGTGCGCATATGTGGTCAGTGC
CCATCACGTGCATCCCCGCGGATGGGGCTAAACTAGCGGAAATCCTCCGA
TCACGGCGTCCGTTAAGCGGATGTTTTTCTCCAGCCAGCAGGAACTCTCT
TTCTTGCATCCCCTTTTGCACGGTATTCACAATGGCTGCTGCTGCTAGGA
CGCTTCGCATAGGTCAATTGCTCCTCTCCATCTCTTAACGTTCTTCTCCT
GCCCGTCTAGTTGCTGACATCTTCTCTCGTGCAGGTCTCATCCCCGGTGA
CGGCATCGGCCGAGAGGTCATTCCGGTGAGTCACCACCAGCAAATAGCTT
CCTGTCGAAACACCAATTCTAACGAAACGCTCTTCATCAGGCCGGCCGGA
AGGTTTTGGAGTCTCTCCCCTCCTCTCTGAACCTCAAGTTCAGCTTCGTC
GATCTCGATGCGGGCTTCGACACCTTCAAGCGCACCGGTAGCGCTCTCCC
CGATAAGACAGTCGAGATCCTCAAGAAGGAGTGCGATGGTGCTCTGTTCG
GCGCTGTCAGGTGAGTGCTACATCGATATCTCCTGTCCTTGTCTGTCACT
GAATTCCCTCCTAACTAATCTCTGTAGCTCCCCTAGCACCAAGGTCGCCG
GCTACTCCTCTCCCATCGTCGCCCTCCGTAAGAAGCTTGACCTGTACGCC
AACGTCCGCCCCGTCAAGACCACCGCCGGCAGCACCGACGGCAAGCCCAT
TGACCTGGTGATTGTTCGTGAGAACACCGAGGATCTCTACGTCAAGGAAG
AGCAGACCAAGGAGACCCCCAATGGCAAGGTTGCCGAGGCTATCAAGCGT
ATCTCCGAGAACGCTTCCTCCCGCATCTCCACCATTGCCGGTGAAATTGC
CCTCCGTCGCCAGAAGATCCGCAGCGTTGCTGGTATCGCTGGCCTCCGCA
CCGAACCCATGGTGACCATCACCCACAAGTCCAACGTTCTCTCTCAGACC
GACGGTCTCTTCCGTGAGACCGCCCGTAAGGCCCTTTCCGCCGACCGCTT
CTCCTCTGTCCAGGTTGAGGAGCAGATCGTCGACTCCATGGTTTACAAGC
TCTTCCGTCAGCCCGAATACTACGACGTCATTGTCGCCCCCAACTTGTAC
GGTGATATCCTGTCGGATGGTGCTGCTGCCCTGGTTGGTAGTCTGGGACT
GGTTCCTAGCGCTAACGTTGGTGATGGCTTCGCCATCGGTGAGCCCTGCC
ACGGCAGTGCCCCCGACATTGAGGGCAAGGGTATTGCCAACCCCATCGCC
ACTCTGCGCAGTGTTGCCCTGATGCTGGAGTTCTTGGGTGAGGAGACTGC
CGCTGCCAAGATCTACACTGCTGTTGATGCCAACCTTGATGAGGCCAAGT
TCCTTTCTCCTGACATGGGCGGTAAGGCTACTACCCAGGAGGTTTTGGAT
GATGTCCTGAAGAGGCTGTAAAGGGTTGTTAAAAAAATGACTCTTGATGT
ATAAATAGCGAGATAAAAGAATCAAGCTTTTAGAGCGAATGTGATGTCAA
TTTTGTTTACAACATCTAAGGGTCTTGCAATAGTGGATGACTAGAATTCC
TTGTCACGGGAATAAATACCATCCTACCTTACTAAGATTGAGAGGTTGAC
AGGAGATTGTACAAGGTAAGATGGTAAGAGGGGTAATTCCATTGCTTATA
TTTTTGTGGTCCCGTGAGCAGGTAATTCAATAAGAGGCAGTCT
back to top

Coding sequence (CDS) from alignment at ch3:3649961..3652003-

>KJC3_004003-T1 ID=KJC3_004003-T1|Name=KJC3_004003-T1|organism=Aspergillus niger KJC3|type=CDS|length=4920bp|location=Sequence derived from alignment at ch3:3649961..3652003- (Aspergillus niger KJC3)
CTCCCCTAGCACCAAGGTCGCCGGCTACTCCTCTCCCATCGTCGCCCTCC
GTAAGAAGCTTGACCTGTACGCCAACGTCCGCCCCGTCAAGACCACCGCC
GGCAGCACCGACGGCAAGCCCATTGACCTGGTGATTGTTCGTGAGAACAC
CGAGGATCTCTACGTCAAGGAAGAGCAGACCAAGGAGACCCCCAATGGCA
AGGTTGCCGAGGCTATCAAGCGTATCTCCGAGAACGCTTCCTCCCGCATC
TCCACCATTGCCGGTGAAATTGCCCTCCGTCGCCAGAAGATCCGCAGCGT
TGCTGGTATCGCTGGCCTCCGCACCGAACCCATGGTGACCATCACCCACA
AGTCCAACGTTCTCTCTCAGACCGACGGTCTCTTCCGTGAGACCGCCCGT
AAGGCCCTTTCCGCCGACCGCTTCTCCTCTGTCCAGGTTGAGGAGCAGAT
CGTCGACTCCATGGTTTACAAGCTCTTCCGTCAGCCCGAATACTACGACG
TCATTGTCGCCCCCAACTTGTACGGTGATATCCTGTCGGATGGTGCTGCT
GCCCTGGTTGGTAGTCTGGGACTGGTTCCTAGCGCTAACGTTGGTGATGG
CTTCGCCATCGGTGAGCCCTGCCACGGCAGTGCCCCCGACATTGAGGGCA
AGGGTATTGCCAACCCCATCGCCACTCTGCGCAGTGTTGCCCTGATGCTG
GAGTTCTTGGGTGAGGAGACTGCCGCTGCCAAGATCTACACTGCTGTTGA
TGCCAACCTTGATGAGGCCAAGTTCCTTTCTCCTGACATGGGCGGTAAGG
CTACTACCCAGGAGGTTTTGGATGATGTCCTGAAGAGGCTGTAAGCCGGC
CGGAAGGTTTTGGAGTCTCTCCCCTCCTCTCTGAACCTCAAGTTCAGCTT
CGTCGATCTCGATGCGGGCTTCGACACCTTCAAGCGCACCGGTAGCGCTC
TCCCCGATAAGACAGTCGAGATCCTCAAGAAGGAGTGCGATGGTGCTCTG
TTCGGCGCTGTCAGGTCTCATCCCCGGTGACGGCATCGGCCGAGAGGTCA
TTCCGATGTGGTCAGTGCCCATCACGTGCATCCCCGCGGATGGGGCTAAA
CTAGCGGAAATCCTCCGATCACGGCGTCCGTTAAGCGGATGTTTTTCTCC
AGCCAGCAGGAACTCTCTTTCTTGCATCCCCTTTTGCACGGTATTCACAA
TGGCTGCTGCTGCTAGGACGCTTCGCATAGCTCCCCTAGCACCAAGGTCG
CCGGCTACTCCTCTCCCATCGTCGCCCTCCGTAAGAAGCTTGACCTGTAC
GCCAACGTCCGCCCCGTCAAGACCACCGCCGGCAGCACCGACGGCAAGCC
CATTGACCTGGTGATTGTTCGTGAGAACACCGAGGATCTCTACGTCAAGG
AAGAGCAGACCAAGGAGACCCCCAATGGCAAGGTTGCCGAGGCTATCAAG
CGTATCTCCGAGAACGCTTCCTCCCGCATCTCCACCATTGCCGGTGAAAT
TGCCCTCCGTCGCCAGAAGATCCGCAGCGTTGCTGGTATCGCTGGCCTCC
GCACCGAACCCATGGTGACCATCACCCACAAGTCCAACGTTCTCTCTCAG
ACCGACGGTCTCTTCCGTGAGACCGCCCGTAAGGCCCTTTCCGCCGACCG
CTTCTCCTCTGTCCAGGTTGAGGAGCAGATCGTCGACTCCATGGTTTACA
AGCTCTTCCGTCAGCCCGAATACTACGACGTCATTGTCGCCCCCAACTTG
TACGGTGATATCCTGTCGGATGGTGCTGCTGCCCTGGTTGGTAGTCTGGG
ACTGGTTCCTAGCGCTAACGTTGGTGATGGCTTCGCCATCGGTGAGCCCT
GCCACGGCAGTGCCCCCGACATTGAGGGCAAGGGTATTGCCAACCCCATC
GCCACTCTGCGCAGTGTTGCCCTGATGCTGGAGTTCTTGGGTGAGGAGAC
TGCCGCTGCCAAGATCTACACTGCTGTTGATGCCAACCTTGATGAGGCCA
AGTTCCTTTCTCCTGACATGGGCGGTAAGGCTACTACCCAGGAGGTTTTG
GATGATGTCCTGAAGAGGCTGTAAGCCGGCCGGAAGGTTTTGGAGTCTCT
CCCCTCCTCTCTGAACCTCAAGTTCAGCTTCGTCGATCTCGATGCGGGCT
TCGACACCTTCAAGCGCACCGGTAGCGCTCTCCCCGATAAGACAGTCGAG
ATCCTCAAGAAGGAGTGCGATGGTGCTCTGTTCGGCGCTGTCAGGTCTCA
TCCCCGGTGACGGCATCGGCCGAGAGGTCATTCCGATGTGGTCAGTGCCC
ATCACGTGCATCCCCGCGGATGGGGCTAAACTAGCGGAAATCCTCCGATC
ACGGCGTCCGTTAAGCGGATGTTTTTCTCCAGCCAGCAGGAACTCTCTTT
CTTGCATCCCCTTTTGCACGGTATTCACAATGGCTGCTGCTGCTAGGACG
CTTCGCATAGCTCCCCTAGCACCAAGGTCGCCGGCTACTCCTCTCCCATC
GTCGCCCTCCGTAAGAAGCTTGACCTGTACGCCAACGTCCGCCCCGTCAA
GACCACCGCCGGCAGCACCGACGGCAAGCCCATTGACCTGGTGATTGTTC
GTGAGAACACCGAGGATCTCTACGTCAAGGAAGAGCAGACCAAGGAGACC
CCCAATGGCAAGGTTGCCGAGGCTATCAAGCGTATCTCCGAGAACGCTTC
CTCCCGCATCTCCACCATTGCCGGTGAAATTGCCCTCCGTCGCCAGAAGA
TCCGCAGCGTTGCTGGTATCGCTGGCCTCCGCACCGAACCCATGGTGACC
ATCACCCACAAGTCCAACGTTCTCTCTCAGACCGACGGTCTCTTCCGTGA
GACCGCCCGTAAGGCCCTTTCCGCCGACCGCTTCTCCTCTGTCCAGGTTG
AGGAGCAGATCGTCGACTCCATGGTTTACAAGCTCTTCCGTCAGCCCGAA
TACTACGACGTCATTGTCGCCCCCAACTTGTACGGTGATATCCTGTCGGA
TGGTGCTGCTGCCCTGGTTGGTAGTCTGGGACTGGTTCCTAGCGCTAACG
TTGGTGATGGCTTCGCCATCGGTGAGCCCTGCCACGGCAGTGCCCCCGAC
ATTGAGGGCAAGGGTATTGCCAACCCCATCGCCACTCTGCGCAGTGTTGC
CCTGATGCTGGAGTTCTTGGGTGAGGAGACTGCCGCTGCCAAGATCTACA
CTGCTGTTGATGCCAACCTTGATGAGGCCAAGTTCCTTTCTCCTGACATG
GGCGGTAAGGCTACTACCCAGGAGGTTTTGGATGATGTCCTGAAGAGGCT
GTAAGCCGGCCGGAAGGTTTTGGAGTCTCTCCCCTCCTCTCTGAACCTCA
AGTTCAGCTTCGTCGATCTCGATGCGGGCTTCGACACCTTCAAGCGCACC
GGTAGCGCTCTCCCCGATAAGACAGTCGAGATCCTCAAGAAGGAGTGCGA
TGGTGCTCTGTTCGGCGCTGTCAGGTCTCATCCCCGGTGACGGCATCGGC
CGAGAGGTCATTCCGATGTGGTCAGTGCCCATCACGTGCATCCCCGCGGA
TGGGGCTAAACTAGCGGAAATCCTCCGATCACGGCGTCCGTTAAGCGGAT
GTTTTTCTCCAGCCAGCAGGAACTCTCTTTCTTGCATCCCCTTTTGCACG
GTATTCACAATGGCTGCTGCTGCTAGGACGCTTCGCATAGCTCCCCTAGC
ACCAAGGTCGCCGGCTACTCCTCTCCCATCGTCGCCCTCCGTAAGAAGCT
TGACCTGTACGCCAACGTCCGCCCCGTCAAGACCACCGCCGGCAGCACCG
ACGGCAAGCCCATTGACCTGGTGATTGTTCGTGAGAACACCGAGGATCTC
TACGTCAAGGAAGAGCAGACCAAGGAGACCCCCAATGGCAAGGTTGCCGA
GGCTATCAAGCGTATCTCCGAGAACGCTTCCTCCCGCATCTCCACCATTG
CCGGTGAAATTGCCCTCCGTCGCCAGAAGATCCGCAGCGTTGCTGGTATC
GCTGGCCTCCGCACCGAACCCATGGTGACCATCACCCACAAGTCCAACGT
TCTCTCTCAGACCGACGGTCTCTTCCGTGAGACCGCCCGTAAGGCCCTTT
CCGCCGACCGCTTCTCCTCTGTCCAGGTTGAGGAGCAGATCGTCGACTCC
ATGGTTTACAAGCTCTTCCGTCAGCCCGAATACTACGACGTCATTGTCGC
CCCCAACTTGTACGGTGATATCCTGTCGGATGGTGCTGCTGCCCTGGTTG
GTAGTCTGGGACTGGTTCCTAGCGCTAACGTTGGTGATGGCTTCGCCATC
GGTGAGCCCTGCCACGGCAGTGCCCCCGACATTGAGGGCAAGGGTATTGC
CAACCCCATCGCCACTCTGCGCAGTGTTGCCCTGATGCTGGAGTTCTTGG
GTGAGGAGACTGCCGCTGCCAAGATCTACACTGCTGTTGATGCCAACCTT
GATGAGGCCAAGTTCCTTTCTCCTGACATGGGCGGTAAGGCTACTACCCA
GGAGGTTTTGGATGATGTCCTGAAGAGGCTGTAAGCCGGCCGGAAGGTTT
TGGAGTCTCTCCCCTCCTCTCTGAACCTCAAGTTCAGCTTCGTCGATCTC
GATGCGGGCTTCGACACCTTCAAGCGCACCGGTAGCGCTCTCCCCGATAA
GACAGTCGAGATCCTCAAGAAGGAGTGCGATGGTGCTCTGTTCGGCGCTG
TCAGGTCTCATCCCCGGTGACGGCATCGGCCGAGAGGTCATTCCGATGTG
GTCAGTGCCCATCACGTGCATCCCCGCGGATGGGGCTAAACTAGCGGAAA
TCCTCCGATCACGGCGTCCGTTAAGCGGATGTTTTTCTCCAGCCAGCAGG
AACTCTCTTTCTTGCATCCCCTTTTGCACGGTATTCACAATGGCTGCTGC
TGCTAGGACGCTTCGCATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0000287magnesium ion binding
GO:0051287NAD binding
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LYS12KJC3_004003Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004003-T1KJC3_004003-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004003-T1.cdsKJC3_004003-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004003-T1.utr3p1KJC3_004003-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004003-T1.exon4KJC3_004003-T1.exon4Aspergillus niger KJC3exon
KJC3_004003-T1.exon3KJC3_004003-T1.exon3Aspergillus niger KJC3exon
KJC3_004003-T1.exon2KJC3_004003-T1.exon2Aspergillus niger KJC3exon
KJC3_004003-T1.exon1KJC3_004003-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004003-T1.utr5p1KJC3_004003-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR019818
DBxrefInterPro:IPR024084
DBxrefPFAM:PF00180
Producthomoisocitrate dehydrogenase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:3649961..3652003 -
Powered by Drupal