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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3759271..3761172+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004042-T1 ID=KJC3_004042-T1|Name=KJC3_004042-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1902bp|location=Sequence derived from alignment at ch3:3759271..3761172+ (Aspergillus niger KJC3)
CCAGAACTCGCTCCAACGCGCTCCCCTCCGTCTTTCGACTTCCATCCCTT
CCGTCCCCAATTCGTCCACACAACACATTCTACGCAATACAGCTCACCTA
TCACTTCCTCTATCGCTCTTATCCACCACCCATACAGCTACTCACAATTG
CGCCCAATGACTTCACTCTCTGCTAAACGCAAGTCTTCTGAAGACGCGTC
CCACAATGACGAAGCAAGGACACCTACGAACAGCCCTCCTCGGAAGAAGC
TTCGTATTACCCGCAGACAAAAGCAAGCCCTGATTGACAACCTGCAGCTC
GAACGTGCGCTCTCTTGATACCTCGCTTACCTGGCAATCCACTAACCAGG
CCATAGTTACCGAGCGCGCCCGCAAACTTCGCGCACAGTATGCCCTCCAG
GCGAACGATCTTCGGGCACGGATTGAAAGACGTGTCAATCGGATTCCTGT
TGCCCTTCGCAAGGCGACAATGGGCGAGCTGCTGGAGAAACACATGGCCT
CTCTTCGGGCCCAACAGGCGAATCCCTCTCCACGGAAACTTCTCAGCCCG
GCCAAAGCGTCAAGGAGTTTCAGAACCGTTTCTGTGAGCCCCAATGTGCG
CAAGGCCTCTGCTGCGAGCCCTAGCGCCCGCAGAGTCAAGAAGCAAAGGT
ACGGCATGAGTGCCTTCAACTTATACGTGCATGTATCGTTGAACAGCGCT
GACTCGAGCATCCAGCCACGGAGAAATCTATTCCGACAAGGAAAACGCCC
CTGCAGCTGGCAAACAGCTCGATGTCCTCAAGAACCCAAAGAGACGTGGA
CCTGGTGCCGCTGCTGGTACTTCGCGTGTTGTGTCCCAAGAGATGAGGGG
TGCAGACTACAGAATCCTATCTCCCAAGACGTCCAATTCCAGAACATATC
CGCACTCGCCGTTACGCGCCTCACCCGAGAAGCCAACGAACTCTTCCTAC
CTTGCAAGACCCATGTCGCCTCTGAAACCCACCAGCCCACTCAAATCAAC
ATCAGCTAGCATTCCTGCACTGGCAGACAACGCTCGCATTAGGCCAGTCA
AAAATACCTCTACCTCGATTAAGGACAACCGCCCCCCATCACAGGCTAAG
AGACCCGCCAGCCGAGCCGCCACAGCCACTAGCAAGACTACGCGCTCACC
ACTGCCAAGGCCCGCGACTCGCCAGCTCGAACGCAGAGGCAGTGTGTCAT
CGTCCGCATCCTCCGGAACAACCGTTGCCAAGCCAACAAGGACAGGTGCC
GGTGCCCGGAAGGCAACGACAGCATCGACTTCAAGCGCGACCGCGAAGAA
GACAACAGTCGCCCGGAGCCAAGCAACTTCGGCCACCGCGAAGAGAAACA
CAACTTCGGCCACCAGCAAGAGGGCTCCCACTCCTGCCGGTGGTGAGGCT
CCAACTGCGGCTCGTAGAGTCCTTCGGAAACGCGCATAAGTGCTGTATTC
TCAACTCAAATTAACCCTTTTGAATTAGCATGTTTCGTTTCAATCATTGG
CTTATCTGCAGGGACATGGAGTAAAAAGGGGTGTATTATCTCTGGGCGGG
ATTATAATATGGAAGGATAACCGGTGTACAAATGGAGTTCTGTCCTGTCC
TTTTTCCAATCAGGTCCTTTTGTGACCATATTGGCTTTCTGATTTTGCTT
CTCTTGATACTGCCGCTTATTGATTATTTCCGATTACAAGTGGCTTTCTT
TCAAATCTTCGACACTTTACATCTCTCCACTGGCTTGACTCGTATCGCAG
GCACTTGCATAGGCAGGGCAGAGCGCTTTCTCGGGCTATCGTAACAGTAC
TACTCTTCTTCATCACCAAAACATGAGAGATAGACTTAGGAGTAATTGCG
GGTAACGTCTTCAATTAGATAGATGCCATTAATGGGTACTACGCGTATGC
GA back to topCoding sequence (CDS) from alignment at ch3:3759271..3761172+ >KJC3_004042-T1 ID=KJC3_004042-T1|Name=KJC3_004042-T1|organism=Aspergillus niger KJC3|type=CDS|length=3492bp|location=Sequence derived from alignment at ch3:3759271..3761172+ (Aspergillus niger KJC3)
ATGACTTCACTCTCTGCTAAACGCAAGTCTTCTGAAGACGCGTCCCACAA
TGACGAAGCAAGGACACCTACGAACAGCCCTCCTCGGAAGAAGCTTCGTA
TTACCCGCAGACAAAAGCAAGCCCTGATTGACAACCTGCAGCTCGAACTT
ACCGAGCGCGCCCGCAAACTTCGCGCACAGTATGCCCTCCAGGCGAACGA
TCTTCGGGCACGGATTGAAAGACGTGTCAATCGGATTCCTGTTGCCCTTC
GCAAGGCGACAATGGGCGAGCTGCTGGAGAAACACATGGCCTCTCTTCGG
GCCCAACAGGCGAATCCCTCTCCACGGAAACTTCTCAGCCCGGCCAAAGC
GTCAAGGAGTTTCAGAACCGTTTCTGTGAGCCCCAATGTGCGCAAGGCCT
CTGCTGCGAGCCCTAGCGCCCGCAGAGTCAAGAAGCAAAGCCACGGAGAA
ATCTATTCCGACAAGGAAAACGCCCCTGCAGCTGGCAAACAGCTCGATGT
CCTCAAGAACCCAAAGAGACGTGGACCTGGTGCCGCTGCTGGTACTTCGC
GTGTTGTGTCCCAAGAGATGAGGGGTGCAGACTACAGAATCCTATCTCCC
AAGACGTCCAATTCCAGAACATATCCGCACTCGCCGTTACGCGCCTCACC
CGAGAAGCCAACGAACTCTTCCTACCTTGCAAGACCCATGTCGCCTCTGA
AACCCACCAGCCCACTCAAATCAACATCAGCTAGCATTCCTGCACTGGCA
GACAACGCTCGCATTAGGCCAGTCAAAAATACCTCTACCTCGATTAAGGA
CAACCGCCCCCCATCACAGGCTAAGAGACCCGCCAGCCGAGCCGCCACAG
CCACTAGCAAGACTACGCGCTCACCACTGCCAAGGCCCGCGACTCGCCAG
CTCGAACGCAGAGGCAGTGTGTCATCGTCCGCATCCTCCGGAACAACCGT
TGCCAAGCCAACAAGGACAGGTGCCGGTGCCCGGAAGGCAACGACAGCAT
CGACTTCAAGCGCGACCGCGAAGAAGACAACAGTCGCCCGGAGCCAAGCA
ACTTCGGCCACCGCGAAGAGAAACACAACTTCGGCCACCAGCAAGAGGGC
TCCCACTCCTGCCGGTGGTGAGGCTCCAACTGCGGCTCGTAGAGTCCTTC
GGAAACGCGCATAAATGACTTCACTCTCTGCTAAACGCAAGTCTTCTGAA
GACGCGTCCCACAATGACGAAGCAAGGACACCTACGAACAGCCCTCCTCG
GAAGAAGCTTCGTATTACCCGCAGACAAAAGCAAGCCCTGATTGACAACC
TGCAGCTCGAACTTACCGAGCGCGCCCGCAAACTTCGCGCACAGTATGCC
CTCCAGGCGAACGATCTTCGGGCACGGATTGAAAGACGTGTCAATCGGAT
TCCTGTTGCCCTTCGCAAGGCGACAATGGGCGAGCTGCTGGAGAAACACA
TGGCCTCTCTTCGGGCCCAACAGGCGAATCCCTCTCCACGGAAACTTCTC
AGCCCGGCCAAAGCGTCAAGGAGTTTCAGAACCGTTTCTGTGAGCCCCAA
TGTGCGCAAGGCCTCTGCTGCGAGCCCTAGCGCCCGCAGAGTCAAGAAGC
AAAGCCACGGAGAAATCTATTCCGACAAGGAAAACGCCCCTGCAGCTGGC
AAACAGCTCGATGTCCTCAAGAACCCAAAGAGACGTGGACCTGGTGCCGC
TGCTGGTACTTCGCGTGTTGTGTCCCAAGAGATGAGGGGTGCAGACTACA
GAATCCTATCTCCCAAGACGTCCAATTCCAGAACATATCCGCACTCGCCG
TTACGCGCCTCACCCGAGAAGCCAACGAACTCTTCCTACCTTGCAAGACC
CATGTCGCCTCTGAAACCCACCAGCCCACTCAAATCAACATCAGCTAGCA
TTCCTGCACTGGCAGACAACGCTCGCATTAGGCCAGTCAAAAATACCTCT
ACCTCGATTAAGGACAACCGCCCCCCATCACAGGCTAAGAGACCCGCCAG
CCGAGCCGCCACAGCCACTAGCAAGACTACGCGCTCACCACTGCCAAGGC
CCGCGACTCGCCAGCTCGAACGCAGAGGCAGTGTGTCATCGTCCGCATCC
TCCGGAACAACCGTTGCCAAGCCAACAAGGACAGGTGCCGGTGCCCGGAA
GGCAACGACAGCATCGACTTCAAGCGCGACCGCGAAGAAGACAACAGTCG
CCCGGAGCCAAGCAACTTCGGCCACCGCGAAGAGAAACACAACTTCGGCC
ACCAGCAAGAGGGCTCCCACTCCTGCCGGTGGTGAGGCTCCAACTGCGGC
TCGTAGAGTCCTTCGGAAACGCGCATAAATGACTTCACTCTCTGCTAAAC
GCAAGTCTTCTGAAGACGCGTCCCACAATGACGAAGCAAGGACACCTACG
AACAGCCCTCCTCGGAAGAAGCTTCGTATTACCCGCAGACAAAAGCAAGC
CCTGATTGACAACCTGCAGCTCGAACTTACCGAGCGCGCCCGCAAACTTC
GCGCACAGTATGCCCTCCAGGCGAACGATCTTCGGGCACGGATTGAAAGA
CGTGTCAATCGGATTCCTGTTGCCCTTCGCAAGGCGACAATGGGCGAGCT
GCTGGAGAAACACATGGCCTCTCTTCGGGCCCAACAGGCGAATCCCTCTC
CACGGAAACTTCTCAGCCCGGCCAAAGCGTCAAGGAGTTTCAGAACCGTT
TCTGTGAGCCCCAATGTGCGCAAGGCCTCTGCTGCGAGCCCTAGCGCCCG
CAGAGTCAAGAAGCAAAGCCACGGAGAAATCTATTCCGACAAGGAAAACG
CCCCTGCAGCTGGCAAACAGCTCGATGTCCTCAAGAACCCAAAGAGACGT
GGACCTGGTGCCGCTGCTGGTACTTCGCGTGTTGTGTCCCAAGAGATGAG
GGGTGCAGACTACAGAATCCTATCTCCCAAGACGTCCAATTCCAGAACAT
ATCCGCACTCGCCGTTACGCGCCTCACCCGAGAAGCCAACGAACTCTTCC
TACCTTGCAAGACCCATGTCGCCTCTGAAACCCACCAGCCCACTCAAATC
AACATCAGCTAGCATTCCTGCACTGGCAGACAACGCTCGCATTAGGCCAG
TCAAAAATACCTCTACCTCGATTAAGGACAACCGCCCCCCATCACAGGCT
AAGAGACCCGCCAGCCGAGCCGCCACAGCCACTAGCAAGACTACGCGCTC
ACCACTGCCAAGGCCCGCGACTCGCCAGCTCGAACGCAGAGGCAGTGTGT
CATCGTCCGCATCCTCCGGAACAACCGTTGCCAAGCCAACAAGGACAGGT
GCCGGTGCCCGGAAGGCAACGACAGCATCGACTTCAAGCGCGACCGCGAA
GAAGACAACAGTCGCCCGGAGCCAAGCAACTTCGGCCACCGCGAAGAGAA
ACACAACTTCGGCCACCAGCAAGAGGGCTCCCACTCCTGCCGGTGGTGAG
GCTCCAACTGCGGCTCGTAGAGTCCTTCGGAAACGCGCATAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004042-T1.utr5p1 | KJC3_004042-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004042-T1.utr3p1 | KJC3_004042-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018851 |
| DBxref | PFAM:PF10444 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3759271..3761172 + |
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