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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:3903392..3903987- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004082-T1 ID=KJC3_004082-T1|Name=KJC3_004082-T1|organism=Aspergillus niger KJC3|type=mRNA|length=596bp|location=Sequence derived from alignment at ch3:3903392..3903987- (Aspergillus niger KJC3)
CCACCATCAACCACCACCGCATCAATAACTTCACCTACCACACCCAACAT
TCCATATTCACCAAAAAGGAAAAAATGCCCACCCCCTCTCTCACCCACCG
CCCCAAATCCCGCCCTACGGCATCTTGCCTCCCCTGCCGGACCCGAAAAG
TCAAAGTACTACCTTGCCCCCCATCCTTTACATTTCAATCCAAATCTAAT
CAAATGCAGTGCAACCGTCTCCAACCATGTGAAACCTGCAGTGCGCGAAA
CATCGCACATGAATGCAAGTACGCTGTTCCGGACGAGGACAGGCAGGCGA
TTGCGCAGGCGGAGATCATTGCTGAGTTACGGGCGGAGGTGAATCGGCTG
CGGCAGCAGATGAATGAGTATGAACAGGAGCATGAGGATTATATGGAGGG
AGGGGGGAGAGGTGAAGTTGATGTCGATGGTCTTCTTTTAGAAGGGGATG
ATGATGATGGTCTGGGAGAGGGGGTAGGAGAAGGGGATGAGTTGGAGAGG
GTGTATCAGATTTTGAAAGATGGGTCGTGGGAGAGGGTGAGGGAGGTGGT
GGGGAGGATTCGGAGGGGGGAGGATGTTACGGGTATTACTGTTTGA back to topCoding sequence (CDS) from alignment at ch3:3903392..3903987- >KJC3_004082-T1 ID=KJC3_004082-T1|Name=KJC3_004082-T1|organism=Aspergillus niger KJC3|type=CDS|length=936bp|location=Sequence derived from alignment at ch3:3903392..3903987- (Aspergillus niger KJC3)
TGCAACCGTCTCCAACCATGTGAAACCTGCAGTGCGCGAAACATCGCACA
TGAATGCAAGTACGCTGTTCCGGACGAGGACAGGCAGGCGATTGCGCAGG
CGGAGATCATTGCTGAGTTACGGGCGGAGGTGAATCGGCTGCGGCAGCAG
ATGAATGAGTATGAACAGGAGCATGAGGATTATATGGAGGGAGGGGGGAG
AGGTGAAGTTGATGTCGATGGTCTTCTTTTAGAAGGGGATGATGATGATG
GTCTGGGAGAGGGGGTAGGAGAAGGGGATGAGTTGGAGAGGGTGTATCAG
ATTTTGAAAGATGGGTCGTGGGAGAGGGTGAGGGAGGTGGTGGGGAGGAT
TCGGAGGGGGGAGGATGTTACGGGTATTACTGTTTGAATGCCCACCCCCT
CTCTCACCCACCGCCCCAAATCCCGCCCTACGGCATCTTGCCTCCCCTGC
CGGACCCGAAAAGTCAAATGCAACCGTCTCCAACCATGTGAAACCTGCAG
TGCGCGAAACATCGCACATGAATGCAAGTACGCTGTTCCGGACGAGGACA
GGCAGGCGATTGCGCAGGCGGAGATCATTGCTGAGTTACGGGCGGAGGTG
AATCGGCTGCGGCAGCAGATGAATGAGTATGAACAGGAGCATGAGGATTA
TATGGAGGGAGGGGGGAGAGGTGAAGTTGATGTCGATGGTCTTCTTTTAG
AAGGGGATGATGATGATGGTCTGGGAGAGGGGGTAGGAGAAGGGGATGAG
TTGGAGAGGGTGTATCAGATTTTGAAAGATGGGTCGTGGGAGAGGGTGAG
GGAGGTGGTGGGGAGGATTCGGAGGGGGGAGGATGTTACGGGTATTACTG
TTTGAATGCCCACCCCCTCTCTCACCCACCGCCCCAAATCCCGCCCTACG
GCATCTTGCCTCCCCTGCCGGACCCGAAAAGTCAAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004082-T1.utr5p1 | KJC3_004082-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:3903392..3903987 - |
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