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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4040060..4042005- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004139-T1 ID=KJC3_004139-T1|Name=KJC3_004139-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1946bp|location=Sequence derived from alignment at ch3:4040060..4042005- (Aspergillus niger KJC3)
GTTGGATCGAGTTGTTTGTGCTCTGAAACACACTAGACCACAATAAAGCA
AAACAGGCTGTTCACTTCGACTGTGTGATAAGTCAGAGATGCTGCCGACG
TGTACCCGTTGCAGAAGCCGGAGGATCAAGGTACCTACCTTCCCTTATCG
CAATTATCATCAAATAGTAGACTAAGGCACGTTCCTGCAGTGCGACTCCT
TGCTTCCAGCGTGCGCCAACTGCTCTAAGCATGATGTTGAATGTACCTTT
CGAGATGAAGCTTTGCAAGCAGATGTTACCCGAGGGTCAGCAGGACGGCG
TCCCACACTCAATCATCCATAGGCTCATCAATTCACAGCTATCTCAAGAC
ATTGCAGGATAGAATCGAGAAGCTGAACTCTGAGCTAGCGTTGAACTCTC
AAATCTCTTCAAGGTGAAAGGACGTCGTTGCCAGTATTATCTGCCCGAAG
CTAATCTGACTATGGAGGGCGGAAGTGGCCTTACAGAGAGGTCTCCTGAT
GGCATGTCAACACGGCCTTCCTTGGTCTCTTCCTTCATCCTTATGCCTAA
ATCTGGTAGAGATATGTACCTAGATCTTTCACTCTCATCACGTCTTGTCG
AGGTCACACTCGAGGTACTTTCACAACATCACAAAACAAATGACTGGAGG
ACTATTGATAAAGAAAGTGACCCGTTACCAGATATCCCGCACCTTGACAG
GTCCATGCTTACACCTGGCGTGGTGCGCGGGCTTCTGAAAGACTACCATC
GCTTCGTTCGACCAAAATATGATATCGTGGAGCTTGATATTCTGAGCCAT
GACGGCATCCACCTACGGAAGCTCCCGGAAATGCGAAGGTTTCAAATACT
GATGGCCCGTTCTATTTCCGCCGCCCAAAAAACGTACAAATCTCCAAATT
GGAAGCCGTTCGCCCATACGTGTCGTGAGTGGGCTAATGACTTCATCGCC
CCAATCATTTGTGCTGCGGACGCAGATTCTATGAAAGTTATCCTACTACT
TCTCGTATATGAACTGGCCGATCCAACTCGCGGCATCATCTGGGAACTCC
TCGATGTTGCGCGAAGAACATGCTTGCAGCTAGGCTGGAACCGAACCGCG
TCGAACTCCAACGACTTCACTAGTAATGAGGAATCGGTTTCAGCTGATCC
TGTGAGAACCCATCTCATGTGCGTACTTAGGGAGATTGAAGGGTGGGCAC
AGCACTGAATTCATTAGTCCTTCTTGGCTCATCTTTTGTAGGTCACTACG
AACGGTATCCAATCGGCCAATCTTGTTGATCGAAGATATGTCATATTGCG
CACCGGAAAAGGATATATCTTCTATCTTATACAACAAACTATTCCACGCA
ACCTACGGTACTAGTCGAATTGGTGATGCCGAAAGCTGCCCTTTTGTTGG
TGAAGTCTCAGGGCTGCTTGATAGGGCCGATGTTATTGCAGATGCTAGCC
CAGCATCCCAGGAAATCTGGCTTGTCCTCCTAGCAACTTGTGTCAGGCAT
AAGCAGTGCGTGGCCTGCTATCAAGAACCGGACGACCAGCAGGGAAAGGG
GATGAGAACATTAAGACGTAAGATTGTCAGGGCAGCGGCAGAACTCTTAT
CAAATACACACAGAGCAACCTTCATTGAGGAAGAGTTTGTATCACCGATT
ATAGCGTGCTCAAGGGCCCTTATATCTGGATGCTCACTAGCGACAGCTAT
AGTGAAGAGGTGGACATCCTTTCAGTCGCACTTCAGAGACTTGATTCTAT
GCAGCGAAATCCTAACCTTCTTCTCTTCTCATTGGAAGGGTGGCCAATCT
TACCTTCATGCCTGGCAAACTATTATGGACCTTTTGCATAGCCATATGGA
ACATAGAAGTTGAATCAGGATAGTCAATTTGGCAAGCACGGTGTCATGCA
AGTCATTGAGGCTTAAAACTATAGGAGAGAAAAATCTCATCTATGC back to topCoding sequence (CDS) from alignment at ch3:4040060..4042005- >KJC3_004139-T1 ID=KJC3_004139-T1|Name=KJC3_004139-T1|organism=Aspergillus niger KJC3|type=CDS|length=7755bp|location=Sequence derived from alignment at ch3:4040060..4042005- (Aspergillus niger KJC3)
GTCACTACGAACGGTATCCAATCGGCCAATCTTGTTGATCGAAGATATGT
CATATTGCGCACCGGAAAAGGATATATCTTCTATCTTATACAACAAACTA
TTCCACGCAACCTACGGTACTAGTCGAATTGGTGATGCCGAAAGCTGCCC
TTTTGTTGGTGAAGTCTCAGGGCTGCTTGATAGGGCCGATGTTATTGCAG
ATGCTAGCCCAGCATCCCAGGAAATCTGGCTTGTCCTCCTAGCAACTTGT
GTCAGGCATAAGCAGTGCGTGGCCTGCTATCAAGAACCGGACGACCAGCA
GGGAAAGGGGATGAGAACATTAAGACGTAAGATTGTCAGGGCAGCGGCAG
AACTCTTATCAAATACACACAGAGCAACCTTCATTGAGGAAGAGTTTGTA
TCACCGATTATAGCGTGCTCAAGGGCCCTTATATCTGGATGCTCACTAGC
GACAGCTATAGTGAAGAGGTGGACATCCTTTCAGTCGCACTTCAGAGACT
TGATTCTATGCAGCGAAATCCTAACCTTCTTCTCTTCTCATTGGAAGGGT
GGCCAATCTTACCTTCATGCCTGGCAAACTATTATGGACCTTTTGCATAG
CCATATGGAACATAGAAGTTGATGGCCTTACAGAGAGGTCTCCTGATGGC
ATGTCAACACGGCCTTCCTTGGTCTCTTCCTTCATCCTTATGCCTAAATC
TGGTAGAGATATGTACCTAGATCTTTCACTCTCATCACGTCTTGTCGAGG
TCACACTCGAGGTACTTTCACAACATCACAAAACAAATGACTGGAGGACT
ATTGATAAAGAAAGTGACCCGTTACCAGATATCCCGCACCTTGACAGGTC
CATGCTTACACCTGGCGTGGTGCGCGGGCTTCTGAAAGACTACCATCGCT
TCGTTCGACCAAAATATGATATCGTGGAGCTTGATATTCTGAGCCATGAC
GGCATCCACCTACGGAAGCTCCCGGAAATGCGAAGGTTTCAAATACTGAT
GGCCCGTTCTATTTCCGCCGCCCAAAAAACGTACAAATCTCCAAATTGGA
AGCCGTTCGCCCATACGTGTCGTGAGTGGGCTAATGACTTCATCGCCCCA
ATCATTTGTGCTGCGGACGCAGATTCTATGAAAGTTATCCTACTACTTCT
CGTATATGAACTGGCCGATCCAACTCGCGGCATCATCTGGGAACTCCTCG
ATGTTGCGCGAAGAACATGCTTGCAGCTAGGCTGGAACCGAACCGCGTCG
AACTCCAACGACTTCACTAGTAATGAGGAATCGGTTTCAGCTGATCCTGT
GAGAACCCATCTCATGTGCGTACTTAGGGAGATTGAAGGCTATCTCAAGA
CATTGCAGGATAGAATCGAGAAGCTGAACTCTGAGCTAGCGTTGAACTCT
CAAATCTCTTCAAGTGCGACTCCTTGCTTCCAGCGTGCGCCAACTGCTCT
AAGCATGATGTTGAATGTACCTTTCGAGATGAAGCTTTGCAAGCAGATGT
TACCCGAGGATGCTGCCGACGTGTACCCGTTGCAGAAGCCGGAGGATCAA
GGTCACTACGAACGGTATCCAATCGGCCAATCTTGTTGATCGAAGATATG
TCATATTGCGCACCGGAAAAGGATATATCTTCTATCTTATACAACAAACT
ATTCCACGCAACCTACGGTACTAGTCGAATTGGTGATGCCGAAAGCTGCC
CTTTTGTTGGTGAAGTCTCAGGGCTGCTTGATAGGGCCGATGTTATTGCA
GATGCTAGCCCAGCATCCCAGGAAATCTGGCTTGTCCTCCTAGCAACTTG
TGTCAGGCATAAGCAGTGCGTGGCCTGCTATCAAGAACCGGACGACCAGC
AGGGAAAGGGGATGAGAACATTAAGACGTAAGATTGTCAGGGCAGCGGCA
GAACTCTTATCAAATACACACAGAGCAACCTTCATTGAGGAAGAGTTTGT
ATCACCGATTATAGCGTGCTCAAGGGCCCTTATATCTGGATGCTCACTAG
CGACAGCTATAGTGAAGAGGTGGACATCCTTTCAGTCGCACTTCAGAGAC
TTGATTCTATGCAGCGAAATCCTAACCTTCTTCTCTTCTCATTGGAAGGG
TGGCCAATCTTACCTTCATGCCTGGCAAACTATTATGGACCTTTTGCATA
GCCATATGGAACATAGAAGTTGATGGCCTTACAGAGAGGTCTCCTGATGG
CATGTCAACACGGCCTTCCTTGGTCTCTTCCTTCATCCTTATGCCTAAAT
CTGGTAGAGATATGTACCTAGATCTTTCACTCTCATCACGTCTTGTCGAG
GTCACACTCGAGGTACTTTCACAACATCACAAAACAAATGACTGGAGGAC
TATTGATAAAGAAAGTGACCCGTTACCAGATATCCCGCACCTTGACAGGT
CCATGCTTACACCTGGCGTGGTGCGCGGGCTTCTGAAAGACTACCATCGC
TTCGTTCGACCAAAATATGATATCGTGGAGCTTGATATTCTGAGCCATGA
CGGCATCCACCTACGGAAGCTCCCGGAAATGCGAAGGTTTCAAATACTGA
TGGCCCGTTCTATTTCCGCCGCCCAAAAAACGTACAAATCTCCAAATTGG
AAGCCGTTCGCCCATACGTGTCGTGAGTGGGCTAATGACTTCATCGCCCC
AATCATTTGTGCTGCGGACGCAGATTCTATGAAAGTTATCCTACTACTTC
TCGTATATGAACTGGCCGATCCAACTCGCGGCATCATCTGGGAACTCCTC
GATGTTGCGCGAAGAACATGCTTGCAGCTAGGCTGGAACCGAACCGCGTC
GAACTCCAACGACTTCACTAGTAATGAGGAATCGGTTTCAGCTGATCCTG
TGAGAACCCATCTCATGTGCGTACTTAGGGAGATTGAAGGCTATCTCAAG
ACATTGCAGGATAGAATCGAGAAGCTGAACTCTGAGCTAGCGTTGAACTC
TCAAATCTCTTCAAGTGCGACTCCTTGCTTCCAGCGTGCGCCAACTGCTC
TAAGCATGATGTTGAATGTACCTTTCGAGATGAAGCTTTGCAAGCAGATG
TTACCCGAGGATGCTGCCGACGTGTACCCGTTGCAGAAGCCGGAGGATCA
AGGTCACTACGAACGGTATCCAATCGGCCAATCTTGTTGATCGAAGATAT
GTCATATTGCGCACCGGAAAAGGATATATCTTCTATCTTATACAACAAAC
TATTCCACGCAACCTACGGTACTAGTCGAATTGGTGATGCCGAAAGCTGC
CCTTTTGTTGGTGAAGTCTCAGGGCTGCTTGATAGGGCCGATGTTATTGC
AGATGCTAGCCCAGCATCCCAGGAAATCTGGCTTGTCCTCCTAGCAACTT
GTGTCAGGCATAAGCAGTGCGTGGCCTGCTATCAAGAACCGGACGACCAG
CAGGGAAAGGGGATGAGAACATTAAGACGTAAGATTGTCAGGGCAGCGGC
AGAACTCTTATCAAATACACACAGAGCAACCTTCATTGAGGAAGAGTTTG
TATCACCGATTATAGCGTGCTCAAGGGCCCTTATATCTGGATGCTCACTA
GCGACAGCTATAGTGAAGAGGTGGACATCCTTTCAGTCGCACTTCAGAGA
CTTGATTCTATGCAGCGAAATCCTAACCTTCTTCTCTTCTCATTGGAAGG
GTGGCCAATCTTACCTTCATGCCTGGCAAACTATTATGGACCTTTTGCAT
AGCCATATGGAACATAGAAGTTGATGGCCTTACAGAGAGGTCTCCTGATG
GCATGTCAACACGGCCTTCCTTGGTCTCTTCCTTCATCCTTATGCCTAAA
TCTGGTAGAGATATGTACCTAGATCTTTCACTCTCATCACGTCTTGTCGA
GGTCACACTCGAGGTACTTTCACAACATCACAAAACAAATGACTGGAGGA
CTATTGATAAAGAAAGTGACCCGTTACCAGATATCCCGCACCTTGACAGG
TCCATGCTTACACCTGGCGTGGTGCGCGGGCTTCTGAAAGACTACCATCG
CTTCGTTCGACCAAAATATGATATCGTGGAGCTTGATATTCTGAGCCATG
ACGGCATCCACCTACGGAAGCTCCCGGAAATGCGAAGGTTTCAAATACTG
ATGGCCCGTTCTATTTCCGCCGCCCAAAAAACGTACAAATCTCCAAATTG
GAAGCCGTTCGCCCATACGTGTCGTGAGTGGGCTAATGACTTCATCGCCC
CAATCATTTGTGCTGCGGACGCAGATTCTATGAAAGTTATCCTACTACTT
CTCGTATATGAACTGGCCGATCCAACTCGCGGCATCATCTGGGAACTCCT
CGATGTTGCGCGAAGAACATGCTTGCAGCTAGGCTGGAACCGAACCGCGT
CGAACTCCAACGACTTCACTAGTAATGAGGAATCGGTTTCAGCTGATCCT
GTGAGAACCCATCTCATGTGCGTACTTAGGGAGATTGAAGGCTATCTCAA
GACATTGCAGGATAGAATCGAGAAGCTGAACTCTGAGCTAGCGTTGAACT
CTCAAATCTCTTCAAGTGCGACTCCTTGCTTCCAGCGTGCGCCAACTGCT
CTAAGCATGATGTTGAATGTACCTTTCGAGATGAAGCTTTGCAAGCAGAT
GTTACCCGAGGATGCTGCCGACGTGTACCCGTTGCAGAAGCCGGAGGATC
AAGGTCACTACGAACGGTATCCAATCGGCCAATCTTGTTGATCGAAGATA
TGTCATATTGCGCACCGGAAAAGGATATATCTTCTATCTTATACAACAAA
CTATTCCACGCAACCTACGGTACTAGTCGAATTGGTGATGCCGAAAGCTG
CCCTTTTGTTGGTGAAGTCTCAGGGCTGCTTGATAGGGCCGATGTTATTG
CAGATGCTAGCCCAGCATCCCAGGAAATCTGGCTTGTCCTCCTAGCAACT
TGTGTCAGGCATAAGCAGTGCGTGGCCTGCTATCAAGAACCGGACGACCA
GCAGGGAAAGGGGATGAGAACATTAAGACGTAAGATTGTCAGGGCAGCGG
CAGAACTCTTATCAAATACACACAGAGCAACCTTCATTGAGGAAGAGTTT
GTATCACCGATTATAGCGTGCTCAAGGGCCCTTATATCTGGATGCTCACT
AGCGACAGCTATAGTGAAGAGGTGGACATCCTTTCAGTCGCACTTCAGAG
ACTTGATTCTATGCAGCGAAATCCTAACCTTCTTCTCTTCTCATTGGAAG
GGTGGCCAATCTTACCTTCATGCCTGGCAAACTATTATGGACCTTTTGCA
TAGCCATATGGAACATAGAAGTTGATGGCCTTACAGAGAGGTCTCCTGAT
GGCATGTCAACACGGCCTTCCTTGGTCTCTTCCTTCATCCTTATGCCTAA
ATCTGGTAGAGATATGTACCTAGATCTTTCACTCTCATCACGTCTTGTCG
AGGTCACACTCGAGGTACTTTCACAACATCACAAAACAAATGACTGGAGG
ACTATTGATAAAGAAAGTGACCCGTTACCAGATATCCCGCACCTTGACAG
GTCCATGCTTACACCTGGCGTGGTGCGCGGGCTTCTGAAAGACTACCATC
GCTTCGTTCGACCAAAATATGATATCGTGGAGCTTGATATTCTGAGCCAT
GACGGCATCCACCTACGGAAGCTCCCGGAAATGCGAAGGTTTCAAATACT
GATGGCCCGTTCTATTTCCGCCGCCCAAAAAACGTACAAATCTCCAAATT
GGAAGCCGTTCGCCCATACGTGTCGTGAGTGGGCTAATGACTTCATCGCC
CCAATCATTTGTGCTGCGGACGCAGATTCTATGAAAGTTATCCTACTACT
TCTCGTATATGAACTGGCCGATCCAACTCGCGGCATCATCTGGGAACTCC
TCGATGTTGCGCGAAGAACATGCTTGCAGCTAGGCTGGAACCGAACCGCG
TCGAACTCCAACGACTTCACTAGTAATGAGGAATCGGTTTCAGCTGATCC
TGTGAGAACCCATCTCATGTGCGTACTTAGGGAGATTGAAGGCTATCTCA
AGACATTGCAGGATAGAATCGAGAAGCTGAACTCTGAGCTAGCGTTGAAC
TCTCAAATCTCTTCAAGTGCGACTCCTTGCTTCCAGCGTGCGCCAACTGC
TCTAAGCATGATGTTGAATGTACCTTTCGAGATGAAGCTTTGCAAGCAGA
TGTTACCCGAGGATGCTGCCGACGTGTACCCGTTGCAGAAGCCGGAGGAT
CAAGGTCACTACGAACGGTATCCAATCGGCCAATCTTGTTGATCGAAGAT
ATGTCATATTGCGCACCGGAAAAGGATATATCTTCTATCTTATACAACAA
ACTATTCCACGCAACCTACGGTACTAGTCGAATTGGTGATGCCGAAAGCT
GCCCTTTTGTTGGTGAAGTCTCAGGGCTGCTTGATAGGGCCGATGTTATT
GCAGATGCTAGCCCAGCATCCCAGGAAATCTGGCTTGTCCTCCTAGCAAC
TTGTGTCAGGCATAAGCAGTGCGTGGCCTGCTATCAAGAACCGGACGACC
AGCAGGGAAAGGGGATGAGAACATTAAGACGTAAGATTGTCAGGGCAGCG
GCAGAACTCTTATCAAATACACACAGAGCAACCTTCATTGAGGAAGAGTT
TGTATCACCGATTATAGCGTGCTCAAGGGCCCTTATATCTGGATGCTCAC
TAGCGACAGCTATAGTGAAGAGGTGGACATCCTTTCAGTCGCACTTCAGA
GACTTGATTCTATGCAGCGAAATCCTAACCTTCTTCTCTTCTCATTGGAA
GGGTGGCCAATCTTACCTTCATGCCTGGCAAACTATTATGGACCTTTTGC
ATAGCCATATGGAACATAGAAGTTGATGGCCTTACAGAGAGGTCTCCTGA
TGGCATGTCAACACGGCCTTCCTTGGTCTCTTCCTTCATCCTTATGCCTA
AATCTGGTAGAGATATGTACCTAGATCTTTCACTCTCATCACGTCTTGTC
GAGGTCACACTCGAGGTACTTTCACAACATCACAAAACAAATGACTGGAG
GACTATTGATAAAGAAAGTGACCCGTTACCAGATATCCCGCACCTTGACA
GGTCCATGCTTACACCTGGCGTGGTGCGCGGGCTTCTGAAAGACTACCAT
CGCTTCGTTCGACCAAAATATGATATCGTGGAGCTTGATATTCTGAGCCA
TGACGGCATCCACCTACGGAAGCTCCCGGAAATGCGAAGGTTTCAAATAC
TGATGGCCCGTTCTATTTCCGCCGCCCAAAAAACGTACAAATCTCCAAAT
TGGAAGCCGTTCGCCCATACGTGTCGTGAGTGGGCTAATGACTTCATCGC
CCCAATCATTTGTGCTGCGGACGCAGATTCTATGAAAGTTATCCTACTAC
TTCTCGTATATGAACTGGCCGATCCAACTCGCGGCATCATCTGGGAACTC
CTCGATGTTGCGCGAAGAACATGCTTGCAGCTAGGCTGGAACCGAACCGC
GTCGAACTCCAACGACTTCACTAGTAATGAGGAATCGGTTTCAGCTGATC
CTGTGAGAACCCATCTCATGTGCGTACTTAGGGAGATTGAAGGCTATCTC
AAGACATTGCAGGATAGAATCGAGAAGCTGAACTCTGAGCTAGCGTTGAA
CTCTCAAATCTCTTCAAGTGCGACTCCTTGCTTCCAGCGTGCGCCAACTG
CTCTAAGCATGATGTTGAATGTACCTTTCGAGATGAAGCTTTGCAAGCAG
ATGTTACCCGAGGATGCTGCCGACGTGTACCCGTTGCAGAAGCCGGAGGA
TCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004139-T1.utr3p1 | KJC3_004139-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004139-T1.utr5p1 | KJC3_004139-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4040060..4042005 - |
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