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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch3:4042252..4044497+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_004140-T1 ID=KJC3_004140-T1|Name=KJC3_004140-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2246bp|location=Sequence derived from alignment at ch3:4042252..4044497+ (Aspergillus niger KJC3)
TTGTCTCATGCATGTTGGCCGCCAACAATGCCACGATCGAGACGCTCAAC
TAAAGTATGTTCCCGCTGCCGGAAGCGCAAAACGAAGGTTCGATCCCACA
ATACCTTCTTCCAATTATTTCTTCTGTTGCTGTAACGTCCGTGCTACATC
CATACTCCCTCTCTAACGCGGCCATGCACCAATAGTGTGACTTCATCTTC
CCAGCATGTACTCCATGCAAACTGGCAAATTTGCCTTGCTTGGGCTTTGA
TCCTAGCTCCAAGGAGGCAGTCCCCAGAAGGTATATATCACATCTCGTCT
ATAGTCACTGGGGACTGACATTGTGTTCCAAGCTTCGTCAAGTCACTCGA
AGCTCAGGTGGAAGAGCTCGAAGCACGACTGCTTTCGTTCAACGCCGCTT
CCACCAACGTTCCGTATCTCATCACTACGGCCGTGGCACAGGCCACCATA
TCCATTGGCATTCCCTTTCAGAACTCGTTTCTCGACTCCAAAGCCTCATC
TTCATTGTTCTTCCGGCCCTCCTGTCCCCCATTGGCAATAGCCCGGGAAC
GGGGACAATCCACTCCTGAGAGACATCCCAGCTTACAGAATAATCGACAC
AATCCCGGCGCGCCCATTAATTTACGTAGTGTTCCATTTTCTGCAATCAA
TCGTATGATTCGGAATTATGTCGACATCCACTTGCCTCAGTACCCCTGCG
TGTCAGAAAACGCGGTAAATGAAATACTGGACAGGATCCAGCATCAGGAC
CTGAAGGACCCAAATGCTCTCCCGATCCACCATGTACCCACTGATGCTGG
CCTGGGGCATTTCGAATATTTTGTATTGCTTATCGCACTTGCAATCTCTG
CGATGACATTGACCTGGAAGGCCGATTACCAAGCTCGAGTGGCTTCGGAG
TCTTTCTATAACGCCGCCGTAAAACACCTACAGGCCATGACAGACCATAG
CGAGATTCAGGCACTACAAATTTCTTTGCTCCTAGCTCACTATGCGCATA
TGTGCCCAGAGAGGGTAGACAATTGGACTTGCATTTCTAACGCGGTCCGG
ATTGTCCTCAATCTTGGACTCTATCTGGAGTGCAATCAACTGGTTCATGG
TGAGCCTTATCAGCGAAGCGTACTATTTTGGGTAGCGTACGGTATGGAGA
GGTCATTATGTACGAACCTCCGCCTACCCTTATCATTTCCGGAAGAGGCA
ATCACGGTAAAGGTAGGTTTCCCAGACGACCCTCTGGCTCTTTGAGAAAC
TCAAGAAATTCCAGTTTCCCACAGGAGAAGAGACAAATCTCCATACGGAA
CACTCCACCGGTAGGCCGTGCAAGAAGTATGTCGCTTACCATATATGTCG
GTACCGTGCACTAGAGACAGAAGTTCATAGAGTGCTTCATCTGGAAGAAG
ACTTGACCAAGTTCGGCAATAACACTATAGAGGAATGGATTGAAAGCATC
ACCCAGAGATTGGAACAGTGGTACGAGACGGCACAGTCGTACACAAAGTA
TGATATGCTTGAATTCAAACATGTGCAGTTTCACCACCTCATGGCACGCA
TCCACCGGCCAACGCCGCGTCTAAGATTGAGAGGTCCAGACAACTGGAAA
GCTGTGTTAAACGCATCATCCGTTTTGATACAGGACTACCTCGCTCAGGA
GCGACGTCGGAGGCTGTTCTATCCTTGGCATGGGGTACATATTCTCTTCG
AAACTGCCGTCATCTCGCTGGAGGCATGCTGGTCAGCACGGAATTATGAA
CCGCTACAAGTTAGGGCTCATGAGATGTTGCAGATCTCGATTCCTCGATG
TCTTCAGCTTCTCACCAACATCGGTGAACGTTGGGGTGAAGCAGCCGTAT
GTGCTGATCGGTTAAGGCCGCTCGTTGATACTGTCAGGACCGCTTTTAAC
AATCCCGATACGCTGTTGCTGACTATGATTGATGAGAGTGTGATCACGGC
AGAGATACTTGATTTACTTTTCACGGATGGGCCATTGTCATGGACCCGAG
CCAACCGTGGGGAGATAATGTCTGACATGATTGAGAGTGATCCATGGTTA
AATAGCCTGGTGGATGACAGCCTCGAACTTTTCTCGTGGAATCCTGAATG
GTGCATCATGCCTGCTGACGCAATCTCCATCGAGGGATATACGCTTTAAC
CGAGGTCATGATCTGTACTACAATGGCCATTCTCTTGTATCGCTTTTCTC
TTTCGCTGAGAATTATCATTACTATAACAAACTATCTCTGATCCAC back to topCoding sequence (CDS) from alignment at ch3:4042252..4044497+ >KJC3_004140-T1 ID=KJC3_004140-T1|Name=KJC3_004140-T1|organism=Aspergillus niger KJC3|type=CDS|length=7680bp|location=Sequence derived from alignment at ch3:4042252..4044497+ (Aspergillus niger KJC3)
ATGCCACGATCGAGACGCTCAACTAAAGTATGTTCCCGCTGCCGGAAGCG
CAAAACGAAGTGTGACTTCATCTTCCCAGCATGTACTCCATGCAAACTGG
CAAATTTGCCTTGCTTGGGCTTTGATCCTAGCTCCAAGGAGGCAGTCCCC
AGAAGCTTCGTCAAGTCACTCGAAGCTCAGGTGGAAGAGCTCGAAGCACG
ACTGCTTTCGTTCAACGCCGCTTCCACCAACGTTCCGTATCTCATCACTA
CGGCCGTGGCACAGGCCACCATATCCATTGGCATTCCCTTTCAGAACTCG
TTTCTCGACTCCAAAGCCTCATCTTCATTGTTCTTCCGGCCCTCCTGTCC
CCCATTGGCAATAGCCCGGGAACGGGGACAATCCACTCCTGAGAGACATC
CCAGCTTACAGAATAATCGACACAATCCCGGCGCGCCCATTAATTTACGT
AGTGTTCCATTTTCTGCAATCAATCGTATGATTCGGAATTATGTCGACAT
CCACTTGCCTCAGTACCCCTGCGTGTCAGAAAACGCGGTAAATGAAATAC
TGGACAGGATCCAGCATCAGGACCTGAAGGACCCAAATGCTCTCCCGATC
CACCATGTACCCACTGATGCTGGCCTGGGGCATTTCGAATATTTTGTATT
GCTTATCGCACTTGCAATCTCTGCGATGACATTGACCTGGAAGGCCGATT
ACCAAGCTCGAGTGGCTTCGGAGTCTTTCTATAACGCCGCCGTAAAACAC
CTACAGGCCATGACAGACCATAGCGAGATTCAGGCACTACAAATTTCTTT
GCTCCTAGCTCACTATGCGCATATGTGCCCAGAGAGGGTAGACAATTGGA
CTTGCATTTCTAACGCGGTCCGGATTGTCCTCAATCTTGGACTCTATCTG
GAGTGCAATCAACTGGTTCATGGTGAGCCTTATCAGCGAAGCGTACTATT
TTGGGTAGCGTACGGTATGGAGAGGTCATTATGTACGAACCTCCGCCTAC
CCTTATCATTTCCGGAAGAGGCAATCACGGTAAAGTTTCCCACAGGAGAA
GAGACAAATCTCCATACGGAACACTCCACCGGTAGGCCGTGCAAGAAGTA
TGTCGCTTACCATATATGTCGGTACCGTGCACTAGAGACAGAAGTTCATA
GAGTGCTTCATCTGGAAGAAGACTTGACCAAGTTCGGCAATAACACTATA
GAGGAATGGATTGAAAGCATCACCCAGAGATTGGAACAGTGGTACGAGAC
GGCACAGTCGTACACAAAGTATGATATGCTTGAATTCAAACATGTGCAGT
TTCACCACCTCATGGCACGCATCCACCGGCCAACGCCGCGTCTAAGATTG
AGAGGTCCAGACAACTGGAAAGCTGTGTTAAACGCATCATCCGTTTTGAT
ACAGGACTACCTCGCTCAGGAGCGACGTCGGAGGCTGTTCTATCCTTGGC
ATGGGGTACATATTCTCTTCGAAACTGCCGTCATCTCGCTGGAGGCATGC
TGGTCAGCACGGAATTATGAACCGCTACAAGTTAGGGCTCATGAGATGTT
GCAGATCTCGATTCCTCGATGTCTTCAGCTTCTCACCAACATCGGTGAAC
GTTGGGGTGAAGCAGCCGTATGTGCTGATCGGTTAAGGCCGCTCGTTGAT
ACTGTCAGGACCGCTTTTAACAATCCCGATACGCTGTTGCTGACTATGAT
TGATGAGAGTGTGATCACGGCAGAGATACTTGATTTACTTTTCACGGATG
GGCCATTGTCATGGACCCGAGCCAACCGTGGGGAGATAATGTCTGACATG
ATTGAGAGTGATCCATGGTTAAATAGCCTGGTGGATGACAGCCTCGAACT
TTTCTCGTGGAATCCTGAATGGTGCATCATGCCTGCTGACGCAATCTCCA
TCGAGGGATATACGCTTTAAATGCCACGATCGAGACGCTCAACTAAAGTA
TGTTCCCGCTGCCGGAAGCGCAAAACGAAGTGTGACTTCATCTTCCCAGC
ATGTACTCCATGCAAACTGGCAAATTTGCCTTGCTTGGGCTTTGATCCTA
GCTCCAAGGAGGCAGTCCCCAGAAGCTTCGTCAAGTCACTCGAAGCTCAG
GTGGAAGAGCTCGAAGCACGACTGCTTTCGTTCAACGCCGCTTCCACCAA
CGTTCCGTATCTCATCACTACGGCCGTGGCACAGGCCACCATATCCATTG
GCATTCCCTTTCAGAACTCGTTTCTCGACTCCAAAGCCTCATCTTCATTG
TTCTTCCGGCCCTCCTGTCCCCCATTGGCAATAGCCCGGGAACGGGGACA
ATCCACTCCTGAGAGACATCCCAGCTTACAGAATAATCGACACAATCCCG
GCGCGCCCATTAATTTACGTAGTGTTCCATTTTCTGCAATCAATCGTATG
ATTCGGAATTATGTCGACATCCACTTGCCTCAGTACCCCTGCGTGTCAGA
AAACGCGGTAAATGAAATACTGGACAGGATCCAGCATCAGGACCTGAAGG
ACCCAAATGCTCTCCCGATCCACCATGTACCCACTGATGCTGGCCTGGGG
CATTTCGAATATTTTGTATTGCTTATCGCACTTGCAATCTCTGCGATGAC
ATTGACCTGGAAGGCCGATTACCAAGCTCGAGTGGCTTCGGAGTCTTTCT
ATAACGCCGCCGTAAAACACCTACAGGCCATGACAGACCATAGCGAGATT
CAGGCACTACAAATTTCTTTGCTCCTAGCTCACTATGCGCATATGTGCCC
AGAGAGGGTAGACAATTGGACTTGCATTTCTAACGCGGTCCGGATTGTCC
TCAATCTTGGACTCTATCTGGAGTGCAATCAACTGGTTCATGGTGAGCCT
TATCAGCGAAGCGTACTATTTTGGGTAGCGTACGGTATGGAGAGGTCATT
ATGTACGAACCTCCGCCTACCCTTATCATTTCCGGAAGAGGCAATCACGG
TAAAGTTTCCCACAGGAGAAGAGACAAATCTCCATACGGAACACTCCACC
GGTAGGCCGTGCAAGAAGTATGTCGCTTACCATATATGTCGGTACCGTGC
ACTAGAGACAGAAGTTCATAGAGTGCTTCATCTGGAAGAAGACTTGACCA
AGTTCGGCAATAACACTATAGAGGAATGGATTGAAAGCATCACCCAGAGA
TTGGAACAGTGGTACGAGACGGCACAGTCGTACACAAAGTATGATATGCT
TGAATTCAAACATGTGCAGTTTCACCACCTCATGGCACGCATCCACCGGC
CAACGCCGCGTCTAAGATTGAGAGGTCCAGACAACTGGAAAGCTGTGTTA
AACGCATCATCCGTTTTGATACAGGACTACCTCGCTCAGGAGCGACGTCG
GAGGCTGTTCTATCCTTGGCATGGGGTACATATTCTCTTCGAAACTGCCG
TCATCTCGCTGGAGGCATGCTGGTCAGCACGGAATTATGAACCGCTACAA
GTTAGGGCTCATGAGATGTTGCAGATCTCGATTCCTCGATGTCTTCAGCT
TCTCACCAACATCGGTGAACGTTGGGGTGAAGCAGCCGTATGTGCTGATC
GGTTAAGGCCGCTCGTTGATACTGTCAGGACCGCTTTTAACAATCCCGAT
ACGCTGTTGCTGACTATGATTGATGAGAGTGTGATCACGGCAGAGATACT
TGATTTACTTTTCACGGATGGGCCATTGTCATGGACCCGAGCCAACCGTG
GGGAGATAATGTCTGACATGATTGAGAGTGATCCATGGTTAAATAGCCTG
GTGGATGACAGCCTCGAACTTTTCTCGTGGAATCCTGAATGGTGCATCAT
GCCTGCTGACGCAATCTCCATCGAGGGATATACGCTTTAAATGCCACGAT
CGAGACGCTCAACTAAAGTATGTTCCCGCTGCCGGAAGCGCAAAACGAAG
TGTGACTTCATCTTCCCAGCATGTACTCCATGCAAACTGGCAAATTTGCC
TTGCTTGGGCTTTGATCCTAGCTCCAAGGAGGCAGTCCCCAGAAGCTTCG
TCAAGTCACTCGAAGCTCAGGTGGAAGAGCTCGAAGCACGACTGCTTTCG
TTCAACGCCGCTTCCACCAACGTTCCGTATCTCATCACTACGGCCGTGGC
ACAGGCCACCATATCCATTGGCATTCCCTTTCAGAACTCGTTTCTCGACT
CCAAAGCCTCATCTTCATTGTTCTTCCGGCCCTCCTGTCCCCCATTGGCA
ATAGCCCGGGAACGGGGACAATCCACTCCTGAGAGACATCCCAGCTTACA
GAATAATCGACACAATCCCGGCGCGCCCATTAATTTACGTAGTGTTCCAT
TTTCTGCAATCAATCGTATGATTCGGAATTATGTCGACATCCACTTGCCT
CAGTACCCCTGCGTGTCAGAAAACGCGGTAAATGAAATACTGGACAGGAT
CCAGCATCAGGACCTGAAGGACCCAAATGCTCTCCCGATCCACCATGTAC
CCACTGATGCTGGCCTGGGGCATTTCGAATATTTTGTATTGCTTATCGCA
CTTGCAATCTCTGCGATGACATTGACCTGGAAGGCCGATTACCAAGCTCG
AGTGGCTTCGGAGTCTTTCTATAACGCCGCCGTAAAACACCTACAGGCCA
TGACAGACCATAGCGAGATTCAGGCACTACAAATTTCTTTGCTCCTAGCT
CACTATGCGCATATGTGCCCAGAGAGGGTAGACAATTGGACTTGCATTTC
TAACGCGGTCCGGATTGTCCTCAATCTTGGACTCTATCTGGAGTGCAATC
AACTGGTTCATGGTGAGCCTTATCAGCGAAGCGTACTATTTTGGGTAGCG
TACGGTATGGAGAGGTCATTATGTACGAACCTCCGCCTACCCTTATCATT
TCCGGAAGAGGCAATCACGGTAAAGTTTCCCACAGGAGAAGAGACAAATC
TCCATACGGAACACTCCACCGGTAGGCCGTGCAAGAAGTATGTCGCTTAC
CATATATGTCGGTACCGTGCACTAGAGACAGAAGTTCATAGAGTGCTTCA
TCTGGAAGAAGACTTGACCAAGTTCGGCAATAACACTATAGAGGAATGGA
TTGAAAGCATCACCCAGAGATTGGAACAGTGGTACGAGACGGCACAGTCG
TACACAAAGTATGATATGCTTGAATTCAAACATGTGCAGTTTCACCACCT
CATGGCACGCATCCACCGGCCAACGCCGCGTCTAAGATTGAGAGGTCCAG
ACAACTGGAAAGCTGTGTTAAACGCATCATCCGTTTTGATACAGGACTAC
CTCGCTCAGGAGCGACGTCGGAGGCTGTTCTATCCTTGGCATGGGGTACA
TATTCTCTTCGAAACTGCCGTCATCTCGCTGGAGGCATGCTGGTCAGCAC
GGAATTATGAACCGCTACAAGTTAGGGCTCATGAGATGTTGCAGATCTCG
ATTCCTCGATGTCTTCAGCTTCTCACCAACATCGGTGAACGTTGGGGTGA
AGCAGCCGTATGTGCTGATCGGTTAAGGCCGCTCGTTGATACTGTCAGGA
CCGCTTTTAACAATCCCGATACGCTGTTGCTGACTATGATTGATGAGAGT
GTGATCACGGCAGAGATACTTGATTTACTTTTCACGGATGGGCCATTGTC
ATGGACCCGAGCCAACCGTGGGGAGATAATGTCTGACATGATTGAGAGTG
ATCCATGGTTAAATAGCCTGGTGGATGACAGCCTCGAACTTTTCTCGTGG
AATCCTGAATGGTGCATCATGCCTGCTGACGCAATCTCCATCGAGGGATA
TACGCTTTAAATGCCACGATCGAGACGCTCAACTAAAGTATGTTCCCGCT
GCCGGAAGCGCAAAACGAAGTGTGACTTCATCTTCCCAGCATGTACTCCA
TGCAAACTGGCAAATTTGCCTTGCTTGGGCTTTGATCCTAGCTCCAAGGA
GGCAGTCCCCAGAAGCTTCGTCAAGTCACTCGAAGCTCAGGTGGAAGAGC
TCGAAGCACGACTGCTTTCGTTCAACGCCGCTTCCACCAACGTTCCGTAT
CTCATCACTACGGCCGTGGCACAGGCCACCATATCCATTGGCATTCCCTT
TCAGAACTCGTTTCTCGACTCCAAAGCCTCATCTTCATTGTTCTTCCGGC
CCTCCTGTCCCCCATTGGCAATAGCCCGGGAACGGGGACAATCCACTCCT
GAGAGACATCCCAGCTTACAGAATAATCGACACAATCCCGGCGCGCCCAT
TAATTTACGTAGTGTTCCATTTTCTGCAATCAATCGTATGATTCGGAATT
ATGTCGACATCCACTTGCCTCAGTACCCCTGCGTGTCAGAAAACGCGGTA
AATGAAATACTGGACAGGATCCAGCATCAGGACCTGAAGGACCCAAATGC
TCTCCCGATCCACCATGTACCCACTGATGCTGGCCTGGGGCATTTCGAAT
ATTTTGTATTGCTTATCGCACTTGCAATCTCTGCGATGACATTGACCTGG
AAGGCCGATTACCAAGCTCGAGTGGCTTCGGAGTCTTTCTATAACGCCGC
CGTAAAACACCTACAGGCCATGACAGACCATAGCGAGATTCAGGCACTAC
AAATTTCTTTGCTCCTAGCTCACTATGCGCATATGTGCCCAGAGAGGGTA
GACAATTGGACTTGCATTTCTAACGCGGTCCGGATTGTCCTCAATCTTGG
ACTCTATCTGGAGTGCAATCAACTGGTTCATGGTGAGCCTTATCAGCGAA
GCGTACTATTTTGGGTAGCGTACGGTATGGAGAGGTCATTATGTACGAAC
CTCCGCCTACCCTTATCATTTCCGGAAGAGGCAATCACGGTAAAGTTTCC
CACAGGAGAAGAGACAAATCTCCATACGGAACACTCCACCGGTAGGCCGT
GCAAGAAGTATGTCGCTTACCATATATGTCGGTACCGTGCACTAGAGACA
GAAGTTCATAGAGTGCTTCATCTGGAAGAAGACTTGACCAAGTTCGGCAA
TAACACTATAGAGGAATGGATTGAAAGCATCACCCAGAGATTGGAACAGT
GGTACGAGACGGCACAGTCGTACACAAAGTATGATATGCTTGAATTCAAA
CATGTGCAGTTTCACCACCTCATGGCACGCATCCACCGGCCAACGCCGCG
TCTAAGATTGAGAGGTCCAGACAACTGGAAAGCTGTGTTAAACGCATCAT
CCGTTTTGATACAGGACTACCTCGCTCAGGAGCGACGTCGGAGGCTGTTC
TATCCTTGGCATGGGGTACATATTCTCTTCGAAACTGCCGTCATCTCGCT
GGAGGCATGCTGGTCAGCACGGAATTATGAACCGCTACAAGTTAGGGCTC
ATGAGATGTTGCAGATCTCGATTCCTCGATGTCTTCAGCTTCTCACCAAC
ATCGGTGAACGTTGGGGTGAAGCAGCCGTATGTGCTGATCGGTTAAGGCC
GCTCGTTGATACTGTCAGGACCGCTTTTAACAATCCCGATACGCTGTTGC
TGACTATGATTGATGAGAGTGTGATCACGGCAGAGATACTTGATTTACTT
TTCACGGATGGGCCATTGTCATGGACCCGAGCCAACCGTGGGGAGATAAT
GTCTGACATGATTGAGAGTGATCCATGGTTAAATAGCCTGGTGGATGACA
GCCTCGAACTTTTCTCGTGGAATCCTGAATGGTGCATCATGCCTGCTGAC
GCAATCTCCATCGAGGGATATACGCTTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004140-T1.utr5p1 | KJC3_004140-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_004140-T1.utr3p1 | KJC3_004140-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch3 | supercontig | ch3:4042252..4044497 + |
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